[ARVADOS] updated: 1.1.3-261-g86f77fa
Git user
git at public.curoverse.com
Tue Mar 27 04:47:58 EDT 2018
Summary of changes:
sdk/R/R/Arvados.R | 2457 +-----------------------
sdk/R/R/autoGenAPI.R | 12 +
sdk/R/man/api_client_authorizations.destroy.Rd | 17 -
sdk/R/man/api_client_authorizations.index.Rd | 34 -
sdk/R/man/api_client_authorizations.show.Rd | 17 -
sdk/R/man/api_clients.destroy.Rd | 17 -
sdk/R/man/api_clients.index.Rd | 34 -
sdk/R/man/api_clients.show.Rd | 17 -
sdk/R/man/authorized_keys.destroy.Rd | 17 -
sdk/R/man/authorized_keys.index.Rd | 34 -
sdk/R/man/authorized_keys.show.Rd | 17 -
sdk/R/man/collections.destroy.Rd | 17 -
sdk/R/man/collections.index.Rd | 36 -
sdk/R/man/collections.show.Rd | 17 -
sdk/R/man/container_requests.destroy.Rd | 17 -
sdk/R/man/container_requests.index.Rd | 34 -
sdk/R/man/container_requests.show.Rd | 17 -
sdk/R/man/containers.destroy.Rd | 17 -
sdk/R/man/containers.index.Rd | 34 -
sdk/R/man/containers.secret_mounts.Rd | 17 +
sdk/R/man/containers.show.Rd | 17 -
sdk/R/man/groups.destroy.Rd | 17 -
sdk/R/man/groups.index.Rd | 36 -
sdk/R/man/groups.show.Rd | 17 -
sdk/R/man/humans.destroy.Rd | 17 -
sdk/R/man/humans.index.Rd | 34 -
sdk/R/man/humans.show.Rd | 17 -
sdk/R/man/job_tasks.destroy.Rd | 17 -
sdk/R/man/job_tasks.index.Rd | 34 -
sdk/R/man/job_tasks.show.Rd | 17 -
sdk/R/man/jobs.destroy.Rd | 17 -
sdk/R/man/jobs.index.Rd | 34 -
sdk/R/man/jobs.show.Rd | 17 -
sdk/R/man/keep_disks.destroy.Rd | 17 -
sdk/R/man/keep_disks.index.Rd | 34 -
sdk/R/man/keep_disks.show.Rd | 17 -
sdk/R/man/keep_services.destroy.Rd | 17 -
sdk/R/man/keep_services.index.Rd | 34 -
sdk/R/man/keep_services.show.Rd | 17 -
sdk/R/man/links.destroy.Rd | 17 -
sdk/R/man/links.index.Rd | 34 -
sdk/R/man/links.show.Rd | 17 -
sdk/R/man/logs.destroy.Rd | 17 -
sdk/R/man/logs.index.Rd | 34 -
sdk/R/man/logs.show.Rd | 17 -
sdk/R/man/nodes.destroy.Rd | 17 -
sdk/R/man/nodes.index.Rd | 34 -
sdk/R/man/nodes.show.Rd | 17 -
sdk/R/man/pipeline_instances.destroy.Rd | 17 -
sdk/R/man/pipeline_instances.index.Rd | 34 -
sdk/R/man/pipeline_instances.show.Rd | 17 -
sdk/R/man/pipeline_templates.destroy.Rd | 17 -
sdk/R/man/pipeline_templates.index.Rd | 34 -
sdk/R/man/pipeline_templates.show.Rd | 17 -
sdk/R/man/repositories.destroy.Rd | 17 -
sdk/R/man/repositories.index.Rd | 34 -
sdk/R/man/repositories.show.Rd | 17 -
sdk/R/man/specimens.destroy.Rd | 17 -
sdk/R/man/specimens.index.Rd | 34 -
sdk/R/man/specimens.show.Rd | 17 -
sdk/R/man/traits.destroy.Rd | 17 -
sdk/R/man/traits.index.Rd | 34 -
sdk/R/man/traits.show.Rd | 17 -
sdk/R/man/user_agreements.destroy.Rd | 17 -
sdk/R/man/user_agreements.index.Rd | 34 -
sdk/R/man/user_agreements.show.Rd | 17 -
sdk/R/man/users.destroy.Rd | 17 -
sdk/R/man/users.index.Rd | 34 -
sdk/R/man/users.show.Rd | 17 -
sdk/R/man/virtual_machines.destroy.Rd | 17 -
sdk/R/man/virtual_machines.index.Rd | 34 -
sdk/R/man/virtual_machines.show.Rd | 17 -
sdk/R/man/workflows.destroy.Rd | 17 -
sdk/R/man/workflows.index.Rd | 34 -
sdk/R/man/workflows.show.Rd | 17 -
75 files changed, 71 insertions(+), 4051 deletions(-)
delete mode 100644 sdk/R/man/api_client_authorizations.destroy.Rd
delete mode 100644 sdk/R/man/api_client_authorizations.index.Rd
delete mode 100644 sdk/R/man/api_client_authorizations.show.Rd
delete mode 100644 sdk/R/man/api_clients.destroy.Rd
delete mode 100644 sdk/R/man/api_clients.index.Rd
delete mode 100644 sdk/R/man/api_clients.show.Rd
delete mode 100644 sdk/R/man/authorized_keys.destroy.Rd
delete mode 100644 sdk/R/man/authorized_keys.index.Rd
delete mode 100644 sdk/R/man/authorized_keys.show.Rd
delete mode 100644 sdk/R/man/collections.destroy.Rd
delete mode 100644 sdk/R/man/collections.index.Rd
delete mode 100644 sdk/R/man/collections.show.Rd
delete mode 100644 sdk/R/man/container_requests.destroy.Rd
delete mode 100644 sdk/R/man/container_requests.index.Rd
delete mode 100644 sdk/R/man/container_requests.show.Rd
delete mode 100644 sdk/R/man/containers.destroy.Rd
delete mode 100644 sdk/R/man/containers.index.Rd
create mode 100644 sdk/R/man/containers.secret_mounts.Rd
delete mode 100644 sdk/R/man/containers.show.Rd
delete mode 100644 sdk/R/man/groups.destroy.Rd
delete mode 100644 sdk/R/man/groups.index.Rd
delete mode 100644 sdk/R/man/groups.show.Rd
delete mode 100644 sdk/R/man/humans.destroy.Rd
delete mode 100644 sdk/R/man/humans.index.Rd
delete mode 100644 sdk/R/man/humans.show.Rd
delete mode 100644 sdk/R/man/job_tasks.destroy.Rd
delete mode 100644 sdk/R/man/job_tasks.index.Rd
delete mode 100644 sdk/R/man/job_tasks.show.Rd
delete mode 100644 sdk/R/man/jobs.destroy.Rd
delete mode 100644 sdk/R/man/jobs.index.Rd
delete mode 100644 sdk/R/man/jobs.show.Rd
delete mode 100644 sdk/R/man/keep_disks.destroy.Rd
delete mode 100644 sdk/R/man/keep_disks.index.Rd
delete mode 100644 sdk/R/man/keep_disks.show.Rd
delete mode 100644 sdk/R/man/keep_services.destroy.Rd
delete mode 100644 sdk/R/man/keep_services.index.Rd
delete mode 100644 sdk/R/man/keep_services.show.Rd
delete mode 100644 sdk/R/man/links.destroy.Rd
delete mode 100644 sdk/R/man/links.index.Rd
delete mode 100644 sdk/R/man/links.show.Rd
delete mode 100644 sdk/R/man/logs.destroy.Rd
delete mode 100644 sdk/R/man/logs.index.Rd
delete mode 100644 sdk/R/man/logs.show.Rd
delete mode 100644 sdk/R/man/nodes.destroy.Rd
delete mode 100644 sdk/R/man/nodes.index.Rd
delete mode 100644 sdk/R/man/nodes.show.Rd
delete mode 100644 sdk/R/man/pipeline_instances.destroy.Rd
delete mode 100644 sdk/R/man/pipeline_instances.index.Rd
delete mode 100644 sdk/R/man/pipeline_instances.show.Rd
delete mode 100644 sdk/R/man/pipeline_templates.destroy.Rd
delete mode 100644 sdk/R/man/pipeline_templates.index.Rd
delete mode 100644 sdk/R/man/pipeline_templates.show.Rd
delete mode 100644 sdk/R/man/repositories.destroy.Rd
delete mode 100644 sdk/R/man/repositories.index.Rd
delete mode 100644 sdk/R/man/repositories.show.Rd
delete mode 100644 sdk/R/man/specimens.destroy.Rd
delete mode 100644 sdk/R/man/specimens.index.Rd
delete mode 100644 sdk/R/man/specimens.show.Rd
delete mode 100644 sdk/R/man/traits.destroy.Rd
delete mode 100644 sdk/R/man/traits.index.Rd
delete mode 100644 sdk/R/man/traits.show.Rd
delete mode 100644 sdk/R/man/user_agreements.destroy.Rd
delete mode 100644 sdk/R/man/user_agreements.index.Rd
delete mode 100644 sdk/R/man/user_agreements.show.Rd
delete mode 100644 sdk/R/man/users.destroy.Rd
delete mode 100644 sdk/R/man/users.index.Rd
delete mode 100644 sdk/R/man/users.show.Rd
delete mode 100644 sdk/R/man/virtual_machines.destroy.Rd
delete mode 100644 sdk/R/man/virtual_machines.index.Rd
delete mode 100644 sdk/R/man/virtual_machines.show.Rd
delete mode 100644 sdk/R/man/workflows.destroy.Rd
delete mode 100644 sdk/R/man/workflows.index.Rd
delete mode 100644 sdk/R/man/workflows.show.Rd
via 86f77fa3e1644f224a1b1925cf4da1460819316e (commit)
from 53ce9b61336c5385eb2250267efa69613b5eaec7 (commit)
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commit 86f77fa3e1644f224a1b1925cf4da1460819316e
Author: Fuad Muhic <muhic.fuad at gmail.com>
Date: Tue Mar 27 10:46:11 2018 +0200
Filtered out all methods ending with index, show or destroy in Arvados class.
Arvados-DCO-1.1-Signed-off-by: Fuad Muhic <fmuhic at capeannenterprises.com>
diff --git a/sdk/R/R/Arvados.R b/sdk/R/R/Arvados.R
index c69fe08..94d5fb0 100644
--- a/sdk/R/R/Arvados.R
+++ b/sdk/R/R/Arvados.R
@@ -6,24 +6,6 @@
#' @name users.get
NULL
-#' users.index is a method defined in Arvados class.
-#'
-#' @usage arv$users.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return UserList object.
-#' @name users.index
-NULL
-
#' users.create is a method defined in Arvados class.
#'
#' @usage arv$users.create(user, ensure_unique_name = "false")
@@ -120,22 +102,6 @@ NULL
#' @name users.list
NULL
-#' users.show is a method defined in Arvados class.
-#'
-#' @usage arv$users.show(uuid)
-#' @param uuid
-#' @return User object.
-#' @name users.show
-NULL
-
-#' users.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$users.destroy(uuid)
-#' @param uuid
-#' @return User object.
-#' @name users.destroy
-NULL
-
#' api_client_authorizations.get is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.get(uuid)
@@ -144,24 +110,6 @@ NULL
#' @name api_client_authorizations.get
NULL
-#' api_client_authorizations.index is a method defined in Arvados class.
-#'
-#' @usage arv$api_client_authorizations.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return ApiClientAuthorizationList object.
-#' @name api_client_authorizations.index
-NULL
-
#' api_client_authorizations.create is a method defined in Arvados class.
#'
#' @usage arv$api_client_authorizations.create(apiclientauthorization,
@@ -225,22 +173,6 @@ NULL
#' @name api_client_authorizations.list
NULL
-#' api_client_authorizations.show is a method defined in Arvados class.
-#'
-#' @usage arv$api_client_authorizations.show(uuid)
-#' @param uuid
-#' @return ApiClientAuthorization object.
-#' @name api_client_authorizations.show
-NULL
-
-#' api_client_authorizations.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$api_client_authorizations.destroy(uuid)
-#' @param uuid
-#' @return ApiClientAuthorization object.
-#' @name api_client_authorizations.destroy
-NULL
-
#' containers.get is a method defined in Arvados class.
#'
#' @usage arv$containers.get(uuid)
@@ -249,24 +181,6 @@ NULL
#' @name containers.get
NULL
-#' containers.index is a method defined in Arvados class.
-#'
-#' @usage arv$containers.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return ContainerList object.
-#' @name containers.index
-NULL
-
#' containers.create is a method defined in Arvados class.
#'
#' @usage arv$containers.create(container,
@@ -352,22 +266,6 @@ NULL
#' @name containers.list
NULL
-#' containers.show is a method defined in Arvados class.
-#'
-#' @usage arv$containers.show(uuid)
-#' @param uuid
-#' @return Container object.
-#' @name containers.show
-NULL
-
-#' containers.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$containers.destroy(uuid)
-#' @param uuid
-#' @return Container object.
-#' @name containers.destroy
-NULL
-
#' api_clients.get is a method defined in Arvados class.
#'
#' @usage arv$api_clients.get(uuid)
@@ -376,24 +274,6 @@ NULL
#' @name api_clients.get
NULL
-#' api_clients.index is a method defined in Arvados class.
-#'
-#' @usage arv$api_clients.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return ApiClientList object.
-#' @name api_clients.index
-NULL
-
#' api_clients.create is a method defined in Arvados class.
#'
#' @usage arv$api_clients.create(apiclient,
@@ -440,22 +320,6 @@ NULL
#' @name api_clients.list
NULL
-#' api_clients.show is a method defined in Arvados class.
-#'
-#' @usage arv$api_clients.show(uuid)
-#' @param uuid
-#' @return ApiClient object.
-#' @name api_clients.show
-NULL
-
-#' api_clients.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$api_clients.destroy(uuid)
-#' @param uuid
-#' @return ApiClient object.
-#' @name api_clients.destroy
-NULL
-
#' authorized_keys.get is a method defined in Arvados class.
#'
#' @usage arv$authorized_keys.get(uuid)
@@ -464,24 +328,6 @@ NULL
#' @name authorized_keys.get
NULL
-#' authorized_keys.index is a method defined in Arvados class.
-#'
-#' @usage arv$authorized_keys.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return AuthorizedKeyList object.
-#' @name authorized_keys.index
-NULL
-
#' authorized_keys.create is a method defined in Arvados class.
#'
#' @usage arv$authorized_keys.create(authorizedkey,
@@ -528,22 +374,6 @@ NULL
#' @name authorized_keys.list
NULL
-#' authorized_keys.show is a method defined in Arvados class.
-#'
-#' @usage arv$authorized_keys.show(uuid)
-#' @param uuid
-#' @return AuthorizedKey object.
-#' @name authorized_keys.show
-NULL
-
-#' authorized_keys.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$authorized_keys.destroy(uuid)
-#' @param uuid
-#' @return AuthorizedKey object.
-#' @name authorized_keys.destroy
-NULL
-
#' container_requests.get is a method defined in Arvados class.
#'
#' @usage arv$container_requests.get(uuid)
@@ -552,24 +382,6 @@ NULL
#' @name container_requests.get
NULL
-#' container_requests.index is a method defined in Arvados class.
-#'
-#' @usage arv$container_requests.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return ContainerRequestList object.
-#' @name container_requests.index
-NULL
-
#' container_requests.create is a method defined in Arvados class.
#'
#' @usage arv$container_requests.create(containerrequest,
@@ -616,22 +428,6 @@ NULL
#' @name container_requests.list
NULL
-#' container_requests.show is a method defined in Arvados class.
-#'
-#' @usage arv$container_requests.show(uuid)
-#' @param uuid
-#' @return ContainerRequest object.
-#' @name container_requests.show
-NULL
-
-#' container_requests.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$container_requests.destroy(uuid)
-#' @param uuid
-#' @return ContainerRequest object.
-#' @name container_requests.destroy
-NULL
-
#' collections.get is a method defined in Arvados class.
#'
#' @usage arv$collections.get(uuid)
@@ -640,25 +436,6 @@ NULL
#' @name collections.get
NULL
-#' collections.index is a method defined in Arvados class.
-#'
-#' @usage arv$collections.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact", include_trash = NULL)
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @param include_trash Include collections whose is_trashed attribute is true.
-#' @return CollectionList object.
-#' @name collections.index
-NULL
-
#' collections.create is a method defined in Arvados class.
#'
#' @usage arv$collections.create(collection,
@@ -738,22 +515,6 @@ NULL
#' @name collections.list
NULL
-#' collections.show is a method defined in Arvados class.
-#'
-#' @usage arv$collections.show(uuid)
-#' @param uuid
-#' @return Collection object.
-#' @name collections.show
-NULL
-
-#' collections.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$collections.destroy(uuid)
-#' @param uuid
-#' @return Collection object.
-#' @name collections.destroy
-NULL
-
#' humans.get is a method defined in Arvados class.
#'
#' @usage arv$humans.get(uuid)
@@ -762,24 +523,6 @@ NULL
#' @name humans.get
NULL
-#' humans.index is a method defined in Arvados class.
-#'
-#' @usage arv$humans.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return HumanList object.
-#' @name humans.index
-NULL
-
#' humans.create is a method defined in Arvados class.
#'
#' @usage arv$humans.create(human, ensure_unique_name = "false")
@@ -824,22 +567,6 @@ NULL
#' @name humans.list
NULL
-#' humans.show is a method defined in Arvados class.
-#'
-#' @usage arv$humans.show(uuid)
-#' @param uuid
-#' @return Human object.
-#' @name humans.show
-NULL
-
-#' humans.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$humans.destroy(uuid)
-#' @param uuid
-#' @return Human object.
-#' @name humans.destroy
-NULL
-
#' job_tasks.get is a method defined in Arvados class.
#'
#' @usage arv$job_tasks.get(uuid)
@@ -848,24 +575,6 @@ NULL
#' @name job_tasks.get
NULL
-#' job_tasks.index is a method defined in Arvados class.
-#'
-#' @usage arv$job_tasks.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return JobTaskList object.
-#' @name job_tasks.index
-NULL
-
#' job_tasks.create is a method defined in Arvados class.
#'
#' @usage arv$job_tasks.create(jobtask, ensure_unique_name = "false")
@@ -910,22 +619,6 @@ NULL
#' @name job_tasks.list
NULL
-#' job_tasks.show is a method defined in Arvados class.
-#'
-#' @usage arv$job_tasks.show(uuid)
-#' @param uuid
-#' @return JobTask object.
-#' @name job_tasks.show
-NULL
-
-#' job_tasks.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$job_tasks.destroy(uuid)
-#' @param uuid
-#' @return JobTask object.
-#' @name job_tasks.destroy
-NULL
-
#' links.get is a method defined in Arvados class.
#'
#' @usage arv$links.get(uuid)
@@ -934,24 +627,6 @@ NULL
#' @name links.get
NULL
-#' links.index is a method defined in Arvados class.
-#'
-#' @usage arv$links.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return LinkList object.
-#' @name links.index
-NULL
-
#' links.create is a method defined in Arvados class.
#'
#' @usage arv$links.create(link, ensure_unique_name = "false")
@@ -996,22 +671,6 @@ NULL
#' @name links.list
NULL
-#' links.show is a method defined in Arvados class.
-#'
-#' @usage arv$links.show(uuid)
-#' @param uuid
-#' @return Link object.
-#' @name links.show
-NULL
-
-#' links.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$links.destroy(uuid)
-#' @param uuid
-#' @return Link object.
-#' @name links.destroy
-NULL
-
#' links.get_permissions is a method defined in Arvados class.
#'
#' @usage arv$links.get_permissions(uuid)
@@ -1028,25 +687,7 @@ NULL
#' @name jobs.get
NULL
-#' jobs.index is a method defined in Arvados class.
-#'
-#' @usage arv$jobs.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return JobList object.
-#' @name jobs.index
-NULL
-
-#' jobs.create is a method defined in Arvados class.
+#' jobs.create is a method defined in Arvados class.
#'
#' @usage arv$jobs.create(job, ensure_unique_name = "false",
#' find_or_create = "false", filters = NULL,
@@ -1136,22 +777,6 @@ NULL
#' @name jobs.list
NULL
-#' jobs.show is a method defined in Arvados class.
-#'
-#' @usage arv$jobs.show(uuid)
-#' @param uuid
-#' @return Job object.
-#' @name jobs.show
-NULL
-
-#' jobs.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$jobs.destroy(uuid)
-#' @param uuid
-#' @return Job object.
-#' @name jobs.destroy
-NULL
-
#' keep_disks.get is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.get(uuid)
@@ -1160,24 +785,6 @@ NULL
#' @name keep_disks.get
NULL
-#' keep_disks.index is a method defined in Arvados class.
-#'
-#' @usage arv$keep_disks.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return KeepDiskList object.
-#' @name keep_disks.index
-NULL
-
#' keep_disks.create is a method defined in Arvados class.
#'
#' @usage arv$keep_disks.create(keepdisk,
@@ -1240,22 +847,6 @@ NULL
#' @name keep_disks.list
NULL
-#' keep_disks.show is a method defined in Arvados class.
-#'
-#' @usage arv$keep_disks.show(uuid)
-#' @param uuid
-#' @return KeepDisk object.
-#' @name keep_disks.show
-NULL
-
-#' keep_disks.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$keep_disks.destroy(uuid)
-#' @param uuid
-#' @return KeepDisk object.
-#' @name keep_disks.destroy
-NULL
-
#' keep_services.get is a method defined in Arvados class.
#'
#' @usage arv$keep_services.get(uuid)
@@ -1264,24 +855,6 @@ NULL
#' @name keep_services.get
NULL
-#' keep_services.index is a method defined in Arvados class.
-#'
-#' @usage arv$keep_services.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return KeepServiceList object.
-#' @name keep_services.index
-NULL
-
#' keep_services.create is a method defined in Arvados class.
#'
#' @usage arv$keep_services.create(keepservice,
@@ -1335,22 +908,6 @@ NULL
#' @name keep_services.list
NULL
-#' keep_services.show is a method defined in Arvados class.
-#'
-#' @usage arv$keep_services.show(uuid)
-#' @param uuid
-#' @return KeepService object.
-#' @name keep_services.show
-NULL
-
-#' keep_services.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$keep_services.destroy(uuid)
-#' @param uuid
-#' @return KeepService object.
-#' @name keep_services.destroy
-NULL
-
#' pipeline_templates.get is a method defined in Arvados class.
#'
#' @usage arv$pipeline_templates.get(uuid)
@@ -1359,24 +916,6 @@ NULL
#' @name pipeline_templates.get
NULL
-#' pipeline_templates.index is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_templates.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return PipelineTemplateList object.
-#' @name pipeline_templates.index
-NULL
-
#' pipeline_templates.create is a method defined in Arvados class.
#'
#' @usage arv$pipeline_templates.create(pipelinetemplate,
@@ -1423,22 +962,6 @@ NULL
#' @name pipeline_templates.list
NULL
-#' pipeline_templates.show is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_templates.show(uuid)
-#' @param uuid
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.show
-NULL
-
-#' pipeline_templates.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_templates.destroy(uuid)
-#' @param uuid
-#' @return PipelineTemplate object.
-#' @name pipeline_templates.destroy
-NULL
-
#' pipeline_instances.get is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.get(uuid)
@@ -1447,24 +970,6 @@ NULL
#' @name pipeline_instances.get
NULL
-#' pipeline_instances.index is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return PipelineInstanceList object.
-#' @name pipeline_instances.index
-NULL
-
#' pipeline_instances.create is a method defined in Arvados class.
#'
#' @usage arv$pipeline_instances.create(pipelineinstance,
@@ -1519,22 +1024,6 @@ NULL
#' @name pipeline_instances.list
NULL
-#' pipeline_instances.show is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.show(uuid)
-#' @param uuid
-#' @return PipelineInstance object.
-#' @name pipeline_instances.show
-NULL
-
-#' pipeline_instances.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$pipeline_instances.destroy(uuid)
-#' @param uuid
-#' @return PipelineInstance object.
-#' @name pipeline_instances.destroy
-NULL
-
#' nodes.get is a method defined in Arvados class.
#'
#' @usage arv$nodes.get(uuid)
@@ -1543,24 +1032,6 @@ NULL
#' @name nodes.get
NULL
-#' nodes.index is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return NodeList object.
-#' @name nodes.index
-NULL
-
#' nodes.create is a method defined in Arvados class.
#'
#' @usage arv$nodes.create(node, ensure_unique_name = "false",
@@ -1617,22 +1088,6 @@ NULL
#' @name nodes.list
NULL
-#' nodes.show is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.show(uuid)
-#' @param uuid
-#' @return Node object.
-#' @name nodes.show
-NULL
-
-#' nodes.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$nodes.destroy(uuid)
-#' @param uuid
-#' @return Node object.
-#' @name nodes.destroy
-NULL
-
#' repositories.get is a method defined in Arvados class.
#'
#' @usage arv$repositories.get(uuid)
@@ -1641,24 +1096,6 @@ NULL
#' @name repositories.get
NULL
-#' repositories.index is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return RepositoryList object.
-#' @name repositories.index
-NULL
-
#' repositories.create is a method defined in Arvados class.
#'
#' @usage arv$repositories.create(repository,
@@ -1712,22 +1149,6 @@ NULL
#' @name repositories.list
NULL
-#' repositories.show is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.show(uuid)
-#' @param uuid
-#' @return Repository object.
-#' @name repositories.show
-NULL
-
-#' repositories.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$repositories.destroy(uuid)
-#' @param uuid
-#' @return Repository object.
-#' @name repositories.destroy
-NULL
-
#' specimens.get is a method defined in Arvados class.
#'
#' @usage arv$specimens.get(uuid)
@@ -1736,24 +1157,6 @@ NULL
#' @name specimens.get
NULL
-#' specimens.index is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return SpecimenList object.
-#' @name specimens.index
-NULL
-
#' specimens.create is a method defined in Arvados class.
#'
#' @usage arv$specimens.create(specimen,
@@ -1800,22 +1203,6 @@ NULL
#' @name specimens.list
NULL
-#' specimens.show is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.show(uuid)
-#' @param uuid
-#' @return Specimen object.
-#' @name specimens.show
-NULL
-
-#' specimens.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$specimens.destroy(uuid)
-#' @param uuid
-#' @return Specimen object.
-#' @name specimens.destroy
-NULL
-
#' logs.get is a method defined in Arvados class.
#'
#' @usage arv$logs.get(uuid)
@@ -1824,24 +1211,6 @@ NULL
#' @name logs.get
NULL
-#' logs.index is a method defined in Arvados class.
-#'
-#' @usage arv$logs.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return LogList object.
-#' @name logs.index
-NULL
-
#' logs.create is a method defined in Arvados class.
#'
#' @usage arv$logs.create(log, ensure_unique_name = "false")
@@ -1885,22 +1254,6 @@ NULL
#' @name logs.list
NULL
-#' logs.show is a method defined in Arvados class.
-#'
-#' @usage arv$logs.show(uuid)
-#' @param uuid
-#' @return Log object.
-#' @name logs.show
-NULL
-
-#' logs.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$logs.destroy(uuid)
-#' @param uuid
-#' @return Log object.
-#' @name logs.destroy
-NULL
-
#' traits.get is a method defined in Arvados class.
#'
#' @usage arv$traits.get(uuid)
@@ -1909,24 +1262,6 @@ NULL
#' @name traits.get
NULL
-#' traits.index is a method defined in Arvados class.
-#'
-#' @usage arv$traits.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return TraitList object.
-#' @name traits.index
-NULL
-
#' traits.create is a method defined in Arvados class.
#'
#' @usage arv$traits.create(trait, ensure_unique_name = "false")
@@ -1971,22 +1306,6 @@ NULL
#' @name traits.list
NULL
-#' traits.show is a method defined in Arvados class.
-#'
-#' @usage arv$traits.show(uuid)
-#' @param uuid
-#' @return Trait object.
-#' @name traits.show
-NULL
-
-#' traits.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$traits.destroy(uuid)
-#' @param uuid
-#' @return Trait object.
-#' @name traits.destroy
-NULL
-
#' virtual_machines.get is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.get(uuid)
@@ -1995,25 +1314,7 @@ NULL
#' @name virtual_machines.get
NULL
-#' virtual_machines.index is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return VirtualMachineList object.
-#' @name virtual_machines.index
-NULL
-
-#' virtual_machines.create is a method defined in Arvados class.
+#' virtual_machines.create is a method defined in Arvados class.
#'
#' @usage arv$virtual_machines.create(virtualmachine,
#' ensure_unique_name = "false")
@@ -2074,22 +1375,6 @@ NULL
#' @name virtual_machines.list
NULL
-#' virtual_machines.show is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.show(uuid)
-#' @param uuid
-#' @return VirtualMachine object.
-#' @name virtual_machines.show
-NULL
-
-#' virtual_machines.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$virtual_machines.destroy(uuid)
-#' @param uuid
-#' @return VirtualMachine object.
-#' @name virtual_machines.destroy
-NULL
-
#' workflows.get is a method defined in Arvados class.
#'
#' @usage arv$workflows.get(uuid)
@@ -2098,24 +1383,6 @@ NULL
#' @name workflows.get
NULL
-#' workflows.index is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return WorkflowList object.
-#' @name workflows.index
-NULL
-
#' workflows.create is a method defined in Arvados class.
#'
#' @usage arv$workflows.create(workflow,
@@ -2162,22 +1429,6 @@ NULL
#' @name workflows.list
NULL
-#' workflows.show is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.show(uuid)
-#' @param uuid
-#' @return Workflow object.
-#' @name workflows.show
-NULL
-
-#' workflows.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$workflows.destroy(uuid)
-#' @param uuid
-#' @return Workflow object.
-#' @name workflows.destroy
-NULL
-
#' groups.get is a method defined in Arvados class.
#'
#' @usage arv$groups.get(uuid)
@@ -2186,25 +1437,6 @@ NULL
#' @name groups.get
NULL
-#' groups.index is a method defined in Arvados class.
-#'
-#' @usage arv$groups.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact", include_trash = NULL)
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @param include_trash Include items whose is_trashed attribute is true.
-#' @return GroupList object.
-#' @name groups.index
-NULL
-
#' groups.create is a method defined in Arvados class.
#'
#' @usage arv$groups.create(group, ensure_unique_name = "false")
@@ -2286,22 +1518,6 @@ NULL
#' @name groups.list
NULL
-#' groups.show is a method defined in Arvados class.
-#'
-#' @usage arv$groups.show(uuid)
-#' @param uuid
-#' @return Group object.
-#' @name groups.show
-NULL
-
-#' groups.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$groups.destroy(uuid)
-#' @param uuid
-#' @return Group object.
-#' @name groups.destroy
-NULL
-
#' user_agreements.get is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.get(uuid)
@@ -2310,24 +1526,6 @@ NULL
#' @name user_agreements.get
NULL
-#' user_agreements.index is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.index(filters = NULL,
-#' where = NULL, order = NULL, select = NULL,
-#' distinct = NULL, limit = "100", offset = "0",
-#' count = "exact")
-#' @param filters
-#' @param where
-#' @param order
-#' @param select
-#' @param distinct
-#' @param limit
-#' @param offset
-#' @param count
-#' @return UserAgreementList object.
-#' @name user_agreements.index
-NULL
-
#' user_agreements.create is a method defined in Arvados class.
#'
#' @usage arv$user_agreements.create(useragreement,
@@ -2395,22 +1593,6 @@ NULL
#' @name user_agreements.new
NULL
-#' user_agreements.show is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.show(uuid)
-#' @param uuid
-#' @return UserAgreement object.
-#' @name user_agreements.show
-NULL
-
-#' user_agreements.destroy is a method defined in Arvados class.
-#'
-#' @usage arv$user_agreements.destroy(uuid)
-#' @param uuid
-#' @return UserAgreement object.
-#' @name user_agreements.destroy
-NULL
-
#' @export
Arvados <- R6::R6Class(
@@ -2495,30 +1677,6 @@ Arvados <- R6::R6Class(
resource
},
- users.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("users")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
users.create = function(user, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("users")
@@ -2734,46 +1892,6 @@ Arvados <- R6::R6Class(
resource
},
- users.show = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- users.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("users/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
api_client_authorizations.get = function(uuid)
{
endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
@@ -2794,31 +1912,6 @@ Arvados <- R6::R6Class(
resource
},
- api_client_authorizations.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("api_client_authorizations")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
api_client_authorizations.create = function(apiclientauthorization,
ensure_unique_name = "false")
{
@@ -2954,46 +2047,6 @@ Arvados <- R6::R6Class(
resource
},
- api_client_authorizations.show = function(uuid)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_client_authorizations.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("api_client_authorizations/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
containers.get = function(uuid)
{
endPoint <- stringr::str_interp("containers/${uuid}")
@@ -3014,31 +2067,6 @@ Arvados <- R6::R6Class(
resource
},
- containers.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("containers")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
containers.create = function(container, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("containers")
@@ -3232,9 +2260,9 @@ Arvados <- R6::R6Class(
resource
},
- containers.show = function(uuid)
+ api_clients.get = function(uuid)
{
- endPoint <- stringr::str_interp("containers/${uuid}")
+ endPoint <- stringr::str_interp("api_clients/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
@@ -3252,84 +2280,19 @@ Arvados <- R6::R6Class(
resource
},
- containers.destroy = function(uuid)
+ api_clients.create = function(apiclient, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("containers/${uuid}")
+ endPoint <- stringr::str_interp("api_clients")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.get = function(uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("api_clients")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.create = function(apiclient, ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("api_clients")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
-
- if(length(apiclient) > 0)
- body <- jsonlite::toJSON(list(apiclient = apiclient),
- auto_unbox = TRUE)
- else
- body <- NULL
+ if(length(apiclient) > 0)
+ body <- jsonlite::toJSON(list(apiclient = apiclient),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
@@ -3410,46 +2373,6 @@ Arvados <- R6::R6Class(
resource
},
- api_clients.show = function(uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- api_clients.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("api_clients/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
authorized_keys.get = function(uuid)
{
endPoint <- stringr::str_interp("authorized_keys/${uuid}")
@@ -3470,31 +2393,6 @@ Arvados <- R6::R6Class(
resource
},
- authorized_keys.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("authorized_keys")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
authorized_keys.create = function(authorizedkey,
ensure_unique_name = "false")
{
@@ -3589,46 +2487,6 @@ Arvados <- R6::R6Class(
resource
},
- authorized_keys.show = function(uuid)
- {
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- authorized_keys.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("authorized_keys/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
container_requests.get = function(uuid)
{
endPoint <- stringr::str_interp("container_requests/${uuid}")
@@ -3649,31 +2507,6 @@ Arvados <- R6::R6Class(
resource
},
- container_requests.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("container_requests")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
container_requests.create = function(containerrequest,
ensure_unique_name = "false")
{
@@ -3768,46 +2601,6 @@ Arvados <- R6::R6Class(
resource
},
- container_requests.show = function(uuid)
- {
- endPoint <- stringr::str_interp("container_requests/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- container_requests.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("container_requests/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
collections.get = function(uuid)
{
endPoint <- stringr::str_interp("collections/${uuid}")
@@ -3828,32 +2621,6 @@ Arvados <- R6::R6Class(
resource
},
- collections.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact", include_trash = NULL)
- {
- endPoint <- stringr::str_interp("collections")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count,
- include_trash = include_trash)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
collections.create = function(collection, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("collections")
@@ -4028,47 +2795,7 @@ Arvados <- R6::R6Class(
resource
},
- collections.show = function(uuid)
- {
- endPoint <- stringr::str_interp("collections/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- collections.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("collections/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- humans.get = function(uuid)
+ humans.get = function(uuid)
{
endPoint <- stringr::str_interp("humans/${uuid}")
url <- paste0(private$host, endPoint)
@@ -4088,30 +2815,6 @@ Arvados <- R6::R6Class(
resource
},
- humans.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("humans")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
humans.create = function(human, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("humans")
@@ -4204,46 +2907,6 @@ Arvados <- R6::R6Class(
resource
},
- humans.show = function(uuid)
- {
- endPoint <- stringr::str_interp("humans/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- humans.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("humans/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
job_tasks.get = function(uuid)
{
endPoint <- stringr::str_interp("job_tasks/${uuid}")
@@ -4264,31 +2927,6 @@ Arvados <- R6::R6Class(
resource
},
- job_tasks.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("job_tasks")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
job_tasks.create = function(jobtask, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("job_tasks")
@@ -4382,46 +3020,6 @@ Arvados <- R6::R6Class(
resource
},
- job_tasks.show = function(uuid)
- {
- endPoint <- stringr::str_interp("job_tasks/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- job_tasks.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("job_tasks/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
links.get = function(uuid)
{
endPoint <- stringr::str_interp("links/${uuid}")
@@ -4442,30 +3040,6 @@ Arvados <- R6::R6Class(
resource
},
- links.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("links")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
links.create = function(link, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("links")
@@ -4558,46 +3132,6 @@ Arvados <- R6::R6Class(
resource
},
- links.show = function(uuid)
- {
- endPoint <- stringr::str_interp("links/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- links.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("links/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
links.get_permissions = function(uuid)
{
endPoint <- stringr::str_interp("permissions/${uuid}")
@@ -4638,30 +3172,6 @@ Arvados <- R6::R6Class(
resource
},
- jobs.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("jobs")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
jobs.create = function(job, ensure_unique_name = "false",
find_or_create = "false", filters = NULL,
minimum_script_version = NULL, exclude_script_versions = NULL)
@@ -4843,9 +3353,9 @@ Arvados <- R6::R6Class(
resource
},
- jobs.show = function(uuid)
+ keep_disks.get = function(uuid)
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("keep_disks/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
@@ -4863,78 +3373,13 @@ Arvados <- R6::R6Class(
resource
},
- jobs.destroy = function(uuid)
+ keep_disks.create = function(keepdisk, ensure_unique_name = "false")
{
- endPoint <- stringr::str_interp("jobs/${uuid}")
+ endPoint <- stringr::str_interp("keep_disks")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- keep_disks.get = function(uuid)
- {
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- keep_disks.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("keep_disks")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- keep_disks.create = function(keepdisk, ensure_unique_name = "false")
- {
- endPoint <- stringr::str_interp("keep_disks")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(ensure_unique_name = ensure_unique_name)
+ queryArgs <- list(ensure_unique_name = ensure_unique_name)
if(length(keepdisk) > 0)
body <- jsonlite::toJSON(list(keepdisk = keepdisk),
@@ -5046,46 +3491,6 @@ Arvados <- R6::R6Class(
resource
},
- keep_disks.show = function(uuid)
- {
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- keep_disks.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("keep_disks/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
keep_services.get = function(uuid)
{
endPoint <- stringr::str_interp("keep_services/${uuid}")
@@ -5106,31 +3511,6 @@ Arvados <- R6::R6Class(
resource
},
- keep_services.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("keep_services")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
keep_services.create = function(keepservice,
ensure_unique_name = "false")
{
@@ -5245,46 +3625,6 @@ Arvados <- R6::R6Class(
resource
},
- keep_services.show = function(uuid)
- {
- endPoint <- stringr::str_interp("keep_services/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- keep_services.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("keep_services/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
pipeline_templates.get = function(uuid)
{
endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
@@ -5305,31 +3645,6 @@ Arvados <- R6::R6Class(
resource
},
- pipeline_templates.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("pipeline_templates")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
pipeline_templates.create = function(pipelinetemplate,
ensure_unique_name = "false")
{
@@ -5424,46 +3739,6 @@ Arvados <- R6::R6Class(
resource
},
- pipeline_templates.show = function(uuid)
- {
- endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- pipeline_templates.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("pipeline_templates/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
pipeline_instances.get = function(uuid)
{
endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
@@ -5484,31 +3759,6 @@ Arvados <- R6::R6Class(
resource
},
- pipeline_instances.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("pipeline_instances")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
pipeline_instances.create = function(pipelineinstance,
ensure_unique_name = "false")
{
@@ -5623,9 +3873,9 @@ Arvados <- R6::R6Class(
resource
},
- pipeline_instances.show = function(uuid)
+ nodes.get = function(uuid)
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
+ endPoint <- stringr::str_interp("nodes/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
@@ -5643,74 +3893,10 @@ Arvados <- R6::R6Class(
resource
},
- pipeline_instances.destroy = function(uuid)
+ nodes.create = function(node, ensure_unique_name = "false",
+ assign_slot = NULL)
{
- endPoint <- stringr::str_interp("pipeline_instances/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.get = function(uuid)
- {
- endPoint <- stringr::str_interp("nodes/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("nodes")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.create = function(node, ensure_unique_name = "false",
- assign_slot = NULL)
- {
- endPoint <- stringr::str_interp("nodes")
+ endPoint <- stringr::str_interp("nodes")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
@@ -5821,46 +4007,6 @@ Arvados <- R6::R6Class(
resource
},
- nodes.show = function(uuid)
- {
- endPoint <- stringr::str_interp("nodes/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- nodes.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("nodes/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
repositories.get = function(uuid)
{
endPoint <- stringr::str_interp("repositories/${uuid}")
@@ -5881,31 +4027,6 @@ Arvados <- R6::R6Class(
resource
},
- repositories.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("repositories")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
repositories.create = function(repository, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("repositories")
@@ -6019,46 +4140,6 @@ Arvados <- R6::R6Class(
resource
},
- repositories.show = function(uuid)
- {
- endPoint <- stringr::str_interp("repositories/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- repositories.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("repositories/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
specimens.get = function(uuid)
{
endPoint <- stringr::str_interp("specimens/${uuid}")
@@ -6079,31 +4160,6 @@ Arvados <- R6::R6Class(
resource
},
- specimens.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("specimens")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
specimens.create = function(specimen, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("specimens")
@@ -6197,46 +4253,6 @@ Arvados <- R6::R6Class(
resource
},
- specimens.show = function(uuid)
- {
- endPoint <- stringr::str_interp("specimens/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- specimens.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("specimens/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
logs.get = function(uuid)
{
endPoint <- stringr::str_interp("logs/${uuid}")
@@ -6257,30 +4273,6 @@ Arvados <- R6::R6Class(
resource
},
- logs.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("logs")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
logs.create = function(log, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("logs")
@@ -6373,46 +4365,6 @@ Arvados <- R6::R6Class(
resource
},
- logs.show = function(uuid)
- {
- endPoint <- stringr::str_interp("logs/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- logs.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("logs/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
traits.get = function(uuid)
{
endPoint <- stringr::str_interp("traits/${uuid}")
@@ -6433,30 +4385,6 @@ Arvados <- R6::R6Class(
resource
},
- traits.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("traits")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
traits.create = function(trait, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("traits")
@@ -6471,75 +4399,7 @@ Arvados <- R6::R6Class(
else
body <- NULL
- response <- private$REST$http$exec("POST", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- traits.update = function(trait, uuid)
- {
- endPoint <- stringr::str_interp("traits/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- if(length(trait) > 0)
- body <- jsonlite::toJSON(list(trait = trait),
- auto_unbox = TRUE)
- else
- body <- NULL
-
- response <- private$REST$http$exec("PUT", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- traits.delete = function(uuid)
- {
- endPoint <- stringr::str_interp("traits/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- traits.list = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact")
- {
- endPoint <- stringr::str_interp("traits")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("POST", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
@@ -6549,7 +4409,7 @@ Arvados <- R6::R6Class(
resource
},
- traits.show = function(uuid)
+ traits.update = function(trait, uuid)
{
endPoint <- stringr::str_interp("traits/${uuid}")
url <- paste0(private$host, endPoint)
@@ -6557,9 +4417,13 @@ Arvados <- R6::R6Class(
"Content-Type" = "application/json")
queryArgs <- NULL
- body <- NULL
+ if(length(trait) > 0)
+ body <- jsonlite::toJSON(list(trait = trait),
+ auto_unbox = TRUE)
+ else
+ body <- NULL
- response <- private$REST$http$exec("GET", url, headers, body,
+ response <- private$REST$http$exec("PUT", url, headers, body,
queryArgs, private$numRetries)
resource <- private$REST$httpParser$parseJSONResponse(response)
@@ -6569,7 +4433,7 @@ Arvados <- R6::R6Class(
resource
},
- traits.destroy = function(uuid)
+ traits.delete = function(uuid)
{
endPoint <- stringr::str_interp("traits/${uuid}")
url <- paste0(private$host, endPoint)
@@ -6589,13 +4453,17 @@ Arvados <- R6::R6Class(
resource
},
- virtual_machines.get = function(uuid)
+ traits.list = function(filters = NULL, where = NULL,
+ order = NULL, select = NULL, distinct = NULL,
+ limit = "100", offset = "0", count = "exact")
{
- endPoint <- stringr::str_interp("virtual_machines/${uuid}")
+ endPoint <- stringr::str_interp("traits")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- NULL
+ queryArgs <- list(filters = filters, where = where,
+ order = order, select = select, distinct = distinct,
+ limit = limit, offset = offset, count = count)
body <- NULL
@@ -6609,18 +4477,13 @@ Arvados <- R6::R6Class(
resource
},
- virtual_machines.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
+ virtual_machines.get = function(uuid)
{
- endPoint <- stringr::str_interp("virtual_machines")
+ endPoint <- stringr::str_interp("virtual_machines/${uuid}")
url <- paste0(private$host, endPoint)
headers <- list(Authorization = paste("OAuth2", private$token),
"Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
+ queryArgs <- NULL
body <- NULL
@@ -6768,46 +4631,6 @@ Arvados <- R6::R6Class(
resource
},
- virtual_machines.show = function(uuid)
- {
- endPoint <- stringr::str_interp("virtual_machines/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- virtual_machines.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("virtual_machines/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
workflows.get = function(uuid)
{
endPoint <- stringr::str_interp("workflows/${uuid}")
@@ -6828,31 +4651,6 @@ Arvados <- R6::R6Class(
resource
},
- workflows.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("workflows")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
workflows.create = function(workflow, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("workflows")
@@ -6946,46 +4744,6 @@ Arvados <- R6::R6Class(
resource
},
- workflows.show = function(uuid)
- {
- endPoint <- stringr::str_interp("workflows/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- workflows.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("workflows/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
groups.get = function(uuid)
{
endPoint <- stringr::str_interp("groups/${uuid}")
@@ -7006,32 +4764,6 @@ Arvados <- R6::R6Class(
resource
},
- groups.index = function(filters = NULL, where = NULL,
- order = NULL, select = NULL, distinct = NULL,
- limit = "100", offset = "0", count = "exact",
- include_trash = NULL)
- {
- endPoint <- stringr::str_interp("groups")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count,
- include_trash = include_trash)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
groups.create = function(group, ensure_unique_name = "false")
{
endPoint <- stringr::str_interp("groups")
@@ -7192,46 +4924,6 @@ Arvados <- R6::R6Class(
resource
},
- groups.show = function(uuid)
- {
- endPoint <- stringr::str_interp("groups/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- groups.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("groups/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
user_agreements.get = function(uuid)
{
endPoint <- stringr::str_interp("user_agreements/${uuid}")
@@ -7252,31 +4944,6 @@ Arvados <- R6::R6Class(
resource
},
- user_agreements.index = function(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
- {
- endPoint <- stringr::str_interp("user_agreements")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- list(filters = filters, where = where,
- order = order, select = select, distinct = distinct,
- limit = limit, offset = offset, count = count)
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
user_agreements.create = function(useragreement,
ensure_unique_name = "false")
{
@@ -7431,46 +5098,6 @@ Arvados <- R6::R6Class(
resource
},
- user_agreements.show = function(uuid)
- {
- endPoint <- stringr::str_interp("user_agreements/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("GET", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
- user_agreements.destroy = function(uuid)
- {
- endPoint <- stringr::str_interp("user_agreements/${uuid}")
- url <- paste0(private$host, endPoint)
- headers <- list(Authorization = paste("OAuth2", private$token),
- "Content-Type" = "application/json")
- queryArgs <- NULL
-
- body <- NULL
-
- response <- private$REST$http$exec("DELETE", url, headers, body,
- queryArgs, private$numRetries)
- resource <- private$REST$httpParser$parseJSONResponse(response)
-
- if(!is.null(resource$errors))
- stop(resource$errors)
-
- resource
- },
-
getHostName = function() private$host,
getToken = function() private$token,
setRESTService = function(newREST) private$REST <- newREST,
diff --git a/sdk/R/R/autoGenAPI.R b/sdk/R/R/autoGenAPI.R
index 8dadd75..ba74f98 100644
--- a/sdk/R/R/autoGenAPI.R
+++ b/sdk/R/R/autoGenAPI.R
@@ -112,6 +112,12 @@ generateClassContent <- function(methodResources, resourceNames)
functions <- Map(function(methodMetaData, methodName)
{
+ #NOTE: Index, show and destroy are aliases for the preferred names
+ # "list", "get" and "delete". Until they are removed from discovery
+ # document we will filter them here.
+ if(methodName %in% c("index", "show", "destroy"))
+ return(NULL)
+
methodName <- paste0(resourceName, ".", methodName)
createMethod(methodName, methodMetaData)
@@ -316,6 +322,12 @@ generateMethodsDocumentation <- function(methodResources, resourceNames)
methodDoc <- Map(function(methodMetaData, methodName)
{
+ #NOTE: Index, show and destroy are aliases for the preferred names
+ # "list", "get" and "delete". Until they are removed from discovery
+ # document we will filter them here.
+ if(methodName %in% c("index", "show", "destroy"))
+ return(NULL)
+
methodName <- paste0(resourceName, ".", methodName)
getMethodDocumentation(methodName, methodMetaData)
diff --git a/sdk/R/man/api_client_authorizations.destroy.Rd b/sdk/R/man/api_client_authorizations.destroy.Rd
deleted file mode 100644
index 63e56e8..0000000
--- a/sdk/R/man/api_client_authorizations.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{api_client_authorizations.destroy}
-\alias{api_client_authorizations.destroy}
-\title{api_client_authorizations.destroy is a method defined in Arvados class.}
-\usage{
-arv$api_client_authorizations.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-ApiClientAuthorization object.
-}
-\description{
-api_client_authorizations.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/api_client_authorizations.index.Rd b/sdk/R/man/api_client_authorizations.index.Rd
deleted file mode 100644
index c5e01a9..0000000
--- a/sdk/R/man/api_client_authorizations.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{api_client_authorizations.index}
-\alias{api_client_authorizations.index}
-\title{api_client_authorizations.index is a method defined in Arvados class.}
-\usage{
-arv$api_client_authorizations.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-ApiClientAuthorizationList object.
-}
-\description{
-api_client_authorizations.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/api_client_authorizations.show.Rd b/sdk/R/man/api_client_authorizations.show.Rd
deleted file mode 100644
index 57c8243..0000000
--- a/sdk/R/man/api_client_authorizations.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{api_client_authorizations.show}
-\alias{api_client_authorizations.show}
-\title{api_client_authorizations.show is a method defined in Arvados class.}
-\usage{
-arv$api_client_authorizations.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-ApiClientAuthorization object.
-}
-\description{
-api_client_authorizations.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/api_clients.destroy.Rd b/sdk/R/man/api_clients.destroy.Rd
deleted file mode 100644
index 0efa267..0000000
--- a/sdk/R/man/api_clients.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{api_clients.destroy}
-\alias{api_clients.destroy}
-\title{api_clients.destroy is a method defined in Arvados class.}
-\usage{
-arv$api_clients.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-ApiClient object.
-}
-\description{
-api_clients.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/api_clients.index.Rd b/sdk/R/man/api_clients.index.Rd
deleted file mode 100644
index 3b46ad3..0000000
--- a/sdk/R/man/api_clients.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{api_clients.index}
-\alias{api_clients.index}
-\title{api_clients.index is a method defined in Arvados class.}
-\usage{
-arv$api_clients.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-ApiClientList object.
-}
-\description{
-api_clients.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/api_clients.show.Rd b/sdk/R/man/api_clients.show.Rd
deleted file mode 100644
index 23d4edb..0000000
--- a/sdk/R/man/api_clients.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{api_clients.show}
-\alias{api_clients.show}
-\title{api_clients.show is a method defined in Arvados class.}
-\usage{
-arv$api_clients.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-ApiClient object.
-}
-\description{
-api_clients.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/authorized_keys.destroy.Rd b/sdk/R/man/authorized_keys.destroy.Rd
deleted file mode 100644
index df8c089..0000000
--- a/sdk/R/man/authorized_keys.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{authorized_keys.destroy}
-\alias{authorized_keys.destroy}
-\title{authorized_keys.destroy is a method defined in Arvados class.}
-\usage{
-arv$authorized_keys.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-AuthorizedKey object.
-}
-\description{
-authorized_keys.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/authorized_keys.index.Rd b/sdk/R/man/authorized_keys.index.Rd
deleted file mode 100644
index 4de5771..0000000
--- a/sdk/R/man/authorized_keys.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{authorized_keys.index}
-\alias{authorized_keys.index}
-\title{authorized_keys.index is a method defined in Arvados class.}
-\usage{
-arv$authorized_keys.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-AuthorizedKeyList object.
-}
-\description{
-authorized_keys.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/authorized_keys.show.Rd b/sdk/R/man/authorized_keys.show.Rd
deleted file mode 100644
index 79cea07..0000000
--- a/sdk/R/man/authorized_keys.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{authorized_keys.show}
-\alias{authorized_keys.show}
-\title{authorized_keys.show is a method defined in Arvados class.}
-\usage{
-arv$authorized_keys.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-AuthorizedKey object.
-}
-\description{
-authorized_keys.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/collections.destroy.Rd b/sdk/R/man/collections.destroy.Rd
deleted file mode 100644
index 2ab90ae..0000000
--- a/sdk/R/man/collections.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{collections.destroy}
-\alias{collections.destroy}
-\title{collections.destroy is a method defined in Arvados class.}
-\usage{
-arv$collections.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Collection object.
-}
-\description{
-collections.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/collections.index.Rd b/sdk/R/man/collections.index.Rd
deleted file mode 100644
index 341d070..0000000
--- a/sdk/R/man/collections.index.Rd
+++ /dev/null
@@ -1,36 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{collections.index}
-\alias{collections.index}
-\title{collections.index is a method defined in Arvados class.}
-\usage{
-arv$collections.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact", include_trash = NULL)
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-
-\item{include_trash}{Include collections whose is_trashed attribute is true.}
-}
-\value{
-CollectionList object.
-}
-\description{
-collections.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/collections.show.Rd b/sdk/R/man/collections.show.Rd
deleted file mode 100644
index f159cfe..0000000
--- a/sdk/R/man/collections.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{collections.show}
-\alias{collections.show}
-\title{collections.show is a method defined in Arvados class.}
-\usage{
-arv$collections.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Collection object.
-}
-\description{
-collections.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/container_requests.destroy.Rd b/sdk/R/man/container_requests.destroy.Rd
deleted file mode 100644
index 0612d1e..0000000
--- a/sdk/R/man/container_requests.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{container_requests.destroy}
-\alias{container_requests.destroy}
-\title{container_requests.destroy is a method defined in Arvados class.}
-\usage{
-arv$container_requests.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-ContainerRequest object.
-}
-\description{
-container_requests.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/container_requests.index.Rd b/sdk/R/man/container_requests.index.Rd
deleted file mode 100644
index 099018c..0000000
--- a/sdk/R/man/container_requests.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{container_requests.index}
-\alias{container_requests.index}
-\title{container_requests.index is a method defined in Arvados class.}
-\usage{
-arv$container_requests.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-ContainerRequestList object.
-}
-\description{
-container_requests.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/container_requests.show.Rd b/sdk/R/man/container_requests.show.Rd
deleted file mode 100644
index 6efc2e7..0000000
--- a/sdk/R/man/container_requests.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{container_requests.show}
-\alias{container_requests.show}
-\title{container_requests.show is a method defined in Arvados class.}
-\usage{
-arv$container_requests.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-ContainerRequest object.
-}
-\description{
-container_requests.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/containers.destroy.Rd b/sdk/R/man/containers.destroy.Rd
deleted file mode 100644
index 6bdf52f..0000000
--- a/sdk/R/man/containers.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{containers.destroy}
-\alias{containers.destroy}
-\title{containers.destroy is a method defined in Arvados class.}
-\usage{
-arv$containers.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Container object.
-}
-\description{
-containers.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/containers.index.Rd b/sdk/R/man/containers.index.Rd
deleted file mode 100644
index d49ed6b..0000000
--- a/sdk/R/man/containers.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{containers.index}
-\alias{containers.index}
-\title{containers.index is a method defined in Arvados class.}
-\usage{
-arv$containers.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-ContainerList object.
-}
-\description{
-containers.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/containers.secret_mounts.Rd b/sdk/R/man/containers.secret_mounts.Rd
new file mode 100644
index 0000000..9afabb8
--- /dev/null
+++ b/sdk/R/man/containers.secret_mounts.Rd
@@ -0,0 +1,17 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/Arvados.R
+\name{containers.secret_mounts}
+\alias{containers.secret_mounts}
+\title{containers.secret_mounts is a method defined in Arvados class.}
+\usage{
+arv$containers.secret_mounts(uuid)
+}
+\arguments{
+\item{uuid}{}
+}
+\value{
+Container object.
+}
+\description{
+containers.secret_mounts is a method defined in Arvados class.
+}
diff --git a/sdk/R/man/containers.show.Rd b/sdk/R/man/containers.show.Rd
deleted file mode 100644
index 8d21809..0000000
--- a/sdk/R/man/containers.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{containers.show}
-\alias{containers.show}
-\title{containers.show is a method defined in Arvados class.}
-\usage{
-arv$containers.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Container object.
-}
-\description{
-containers.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/groups.destroy.Rd b/sdk/R/man/groups.destroy.Rd
deleted file mode 100644
index 380604d..0000000
--- a/sdk/R/man/groups.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{groups.destroy}
-\alias{groups.destroy}
-\title{groups.destroy is a method defined in Arvados class.}
-\usage{
-arv$groups.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Group object.
-}
-\description{
-groups.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/groups.index.Rd b/sdk/R/man/groups.index.Rd
deleted file mode 100644
index 5402cce..0000000
--- a/sdk/R/man/groups.index.Rd
+++ /dev/null
@@ -1,36 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{groups.index}
-\alias{groups.index}
-\title{groups.index is a method defined in Arvados class.}
-\usage{
-arv$groups.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact", include_trash = NULL)
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-
-\item{include_trash}{Include items whose is_trashed attribute is true.}
-}
-\value{
-GroupList object.
-}
-\description{
-groups.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/groups.show.Rd b/sdk/R/man/groups.show.Rd
deleted file mode 100644
index 1ccf1fb..0000000
--- a/sdk/R/man/groups.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{groups.show}
-\alias{groups.show}
-\title{groups.show is a method defined in Arvados class.}
-\usage{
-arv$groups.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Group object.
-}
-\description{
-groups.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/humans.destroy.Rd b/sdk/R/man/humans.destroy.Rd
deleted file mode 100644
index 3aa5e24..0000000
--- a/sdk/R/man/humans.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{humans.destroy}
-\alias{humans.destroy}
-\title{humans.destroy is a method defined in Arvados class.}
-\usage{
-arv$humans.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Human object.
-}
-\description{
-humans.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/humans.index.Rd b/sdk/R/man/humans.index.Rd
deleted file mode 100644
index 9bbbd6d..0000000
--- a/sdk/R/man/humans.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{humans.index}
-\alias{humans.index}
-\title{humans.index is a method defined in Arvados class.}
-\usage{
-arv$humans.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-HumanList object.
-}
-\description{
-humans.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/humans.show.Rd b/sdk/R/man/humans.show.Rd
deleted file mode 100644
index 0dac1b0..0000000
--- a/sdk/R/man/humans.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{humans.show}
-\alias{humans.show}
-\title{humans.show is a method defined in Arvados class.}
-\usage{
-arv$humans.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Human object.
-}
-\description{
-humans.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/job_tasks.destroy.Rd b/sdk/R/man/job_tasks.destroy.Rd
deleted file mode 100644
index fd77d30..0000000
--- a/sdk/R/man/job_tasks.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{job_tasks.destroy}
-\alias{job_tasks.destroy}
-\title{job_tasks.destroy is a method defined in Arvados class.}
-\usage{
-arv$job_tasks.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-JobTask object.
-}
-\description{
-job_tasks.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/job_tasks.index.Rd b/sdk/R/man/job_tasks.index.Rd
deleted file mode 100644
index ff02695..0000000
--- a/sdk/R/man/job_tasks.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{job_tasks.index}
-\alias{job_tasks.index}
-\title{job_tasks.index is a method defined in Arvados class.}
-\usage{
-arv$job_tasks.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-JobTaskList object.
-}
-\description{
-job_tasks.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/job_tasks.show.Rd b/sdk/R/man/job_tasks.show.Rd
deleted file mode 100644
index 4c091eb..0000000
--- a/sdk/R/man/job_tasks.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{job_tasks.show}
-\alias{job_tasks.show}
-\title{job_tasks.show is a method defined in Arvados class.}
-\usage{
-arv$job_tasks.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-JobTask object.
-}
-\description{
-job_tasks.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/jobs.destroy.Rd b/sdk/R/man/jobs.destroy.Rd
deleted file mode 100644
index 3d3ca93..0000000
--- a/sdk/R/man/jobs.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{jobs.destroy}
-\alias{jobs.destroy}
-\title{jobs.destroy is a method defined in Arvados class.}
-\usage{
-arv$jobs.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Job object.
-}
-\description{
-jobs.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/jobs.index.Rd b/sdk/R/man/jobs.index.Rd
deleted file mode 100644
index 7035c99..0000000
--- a/sdk/R/man/jobs.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{jobs.index}
-\alias{jobs.index}
-\title{jobs.index is a method defined in Arvados class.}
-\usage{
-arv$jobs.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-JobList object.
-}
-\description{
-jobs.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/jobs.show.Rd b/sdk/R/man/jobs.show.Rd
deleted file mode 100644
index 3af122a..0000000
--- a/sdk/R/man/jobs.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{jobs.show}
-\alias{jobs.show}
-\title{jobs.show is a method defined in Arvados class.}
-\usage{
-arv$jobs.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Job object.
-}
-\description{
-jobs.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/keep_disks.destroy.Rd b/sdk/R/man/keep_disks.destroy.Rd
deleted file mode 100644
index 6cfbcb1..0000000
--- a/sdk/R/man/keep_disks.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{keep_disks.destroy}
-\alias{keep_disks.destroy}
-\title{keep_disks.destroy is a method defined in Arvados class.}
-\usage{
-arv$keep_disks.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-KeepDisk object.
-}
-\description{
-keep_disks.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/keep_disks.index.Rd b/sdk/R/man/keep_disks.index.Rd
deleted file mode 100644
index 65dc3b5..0000000
--- a/sdk/R/man/keep_disks.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{keep_disks.index}
-\alias{keep_disks.index}
-\title{keep_disks.index is a method defined in Arvados class.}
-\usage{
-arv$keep_disks.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-KeepDiskList object.
-}
-\description{
-keep_disks.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/keep_disks.show.Rd b/sdk/R/man/keep_disks.show.Rd
deleted file mode 100644
index ca8a851..0000000
--- a/sdk/R/man/keep_disks.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{keep_disks.show}
-\alias{keep_disks.show}
-\title{keep_disks.show is a method defined in Arvados class.}
-\usage{
-arv$keep_disks.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-KeepDisk object.
-}
-\description{
-keep_disks.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/keep_services.destroy.Rd b/sdk/R/man/keep_services.destroy.Rd
deleted file mode 100644
index 5336164..0000000
--- a/sdk/R/man/keep_services.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{keep_services.destroy}
-\alias{keep_services.destroy}
-\title{keep_services.destroy is a method defined in Arvados class.}
-\usage{
-arv$keep_services.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-KeepService object.
-}
-\description{
-keep_services.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/keep_services.index.Rd b/sdk/R/man/keep_services.index.Rd
deleted file mode 100644
index 42f9ea3..0000000
--- a/sdk/R/man/keep_services.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{keep_services.index}
-\alias{keep_services.index}
-\title{keep_services.index is a method defined in Arvados class.}
-\usage{
-arv$keep_services.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-KeepServiceList object.
-}
-\description{
-keep_services.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/keep_services.show.Rd b/sdk/R/man/keep_services.show.Rd
deleted file mode 100644
index fa0e54f..0000000
--- a/sdk/R/man/keep_services.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{keep_services.show}
-\alias{keep_services.show}
-\title{keep_services.show is a method defined in Arvados class.}
-\usage{
-arv$keep_services.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-KeepService object.
-}
-\description{
-keep_services.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/links.destroy.Rd b/sdk/R/man/links.destroy.Rd
deleted file mode 100644
index 8ce61c9..0000000
--- a/sdk/R/man/links.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{links.destroy}
-\alias{links.destroy}
-\title{links.destroy is a method defined in Arvados class.}
-\usage{
-arv$links.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Link object.
-}
-\description{
-links.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/links.index.Rd b/sdk/R/man/links.index.Rd
deleted file mode 100644
index 0301a11..0000000
--- a/sdk/R/man/links.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{links.index}
-\alias{links.index}
-\title{links.index is a method defined in Arvados class.}
-\usage{
-arv$links.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-LinkList object.
-}
-\description{
-links.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/links.show.Rd b/sdk/R/man/links.show.Rd
deleted file mode 100644
index 320fc5b..0000000
--- a/sdk/R/man/links.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{links.show}
-\alias{links.show}
-\title{links.show is a method defined in Arvados class.}
-\usage{
-arv$links.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Link object.
-}
-\description{
-links.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/logs.destroy.Rd b/sdk/R/man/logs.destroy.Rd
deleted file mode 100644
index 7c795c5..0000000
--- a/sdk/R/man/logs.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{logs.destroy}
-\alias{logs.destroy}
-\title{logs.destroy is a method defined in Arvados class.}
-\usage{
-arv$logs.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Log object.
-}
-\description{
-logs.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/logs.index.Rd b/sdk/R/man/logs.index.Rd
deleted file mode 100644
index 719a8d3..0000000
--- a/sdk/R/man/logs.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{logs.index}
-\alias{logs.index}
-\title{logs.index is a method defined in Arvados class.}
-\usage{
-arv$logs.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-LogList object.
-}
-\description{
-logs.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/logs.show.Rd b/sdk/R/man/logs.show.Rd
deleted file mode 100644
index 021127a..0000000
--- a/sdk/R/man/logs.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{logs.show}
-\alias{logs.show}
-\title{logs.show is a method defined in Arvados class.}
-\usage{
-arv$logs.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Log object.
-}
-\description{
-logs.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/nodes.destroy.Rd b/sdk/R/man/nodes.destroy.Rd
deleted file mode 100644
index 4a2fc36..0000000
--- a/sdk/R/man/nodes.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{nodes.destroy}
-\alias{nodes.destroy}
-\title{nodes.destroy is a method defined in Arvados class.}
-\usage{
-arv$nodes.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Node object.
-}
-\description{
-nodes.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/nodes.index.Rd b/sdk/R/man/nodes.index.Rd
deleted file mode 100644
index 90a8ec5..0000000
--- a/sdk/R/man/nodes.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{nodes.index}
-\alias{nodes.index}
-\title{nodes.index is a method defined in Arvados class.}
-\usage{
-arv$nodes.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-NodeList object.
-}
-\description{
-nodes.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/nodes.show.Rd b/sdk/R/man/nodes.show.Rd
deleted file mode 100644
index 20e2fae..0000000
--- a/sdk/R/man/nodes.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{nodes.show}
-\alias{nodes.show}
-\title{nodes.show is a method defined in Arvados class.}
-\usage{
-arv$nodes.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Node object.
-}
-\description{
-nodes.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/pipeline_instances.destroy.Rd b/sdk/R/man/pipeline_instances.destroy.Rd
deleted file mode 100644
index 77d7488..0000000
--- a/sdk/R/man/pipeline_instances.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{pipeline_instances.destroy}
-\alias{pipeline_instances.destroy}
-\title{pipeline_instances.destroy is a method defined in Arvados class.}
-\usage{
-arv$pipeline_instances.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-PipelineInstance object.
-}
-\description{
-pipeline_instances.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/pipeline_instances.index.Rd b/sdk/R/man/pipeline_instances.index.Rd
deleted file mode 100644
index c34acf4..0000000
--- a/sdk/R/man/pipeline_instances.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{pipeline_instances.index}
-\alias{pipeline_instances.index}
-\title{pipeline_instances.index is a method defined in Arvados class.}
-\usage{
-arv$pipeline_instances.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-PipelineInstanceList object.
-}
-\description{
-pipeline_instances.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/pipeline_instances.show.Rd b/sdk/R/man/pipeline_instances.show.Rd
deleted file mode 100644
index 8aff943..0000000
--- a/sdk/R/man/pipeline_instances.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{pipeline_instances.show}
-\alias{pipeline_instances.show}
-\title{pipeline_instances.show is a method defined in Arvados class.}
-\usage{
-arv$pipeline_instances.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-PipelineInstance object.
-}
-\description{
-pipeline_instances.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/pipeline_templates.destroy.Rd b/sdk/R/man/pipeline_templates.destroy.Rd
deleted file mode 100644
index b922775..0000000
--- a/sdk/R/man/pipeline_templates.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{pipeline_templates.destroy}
-\alias{pipeline_templates.destroy}
-\title{pipeline_templates.destroy is a method defined in Arvados class.}
-\usage{
-arv$pipeline_templates.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-PipelineTemplate object.
-}
-\description{
-pipeline_templates.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/pipeline_templates.index.Rd b/sdk/R/man/pipeline_templates.index.Rd
deleted file mode 100644
index 316a873..0000000
--- a/sdk/R/man/pipeline_templates.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{pipeline_templates.index}
-\alias{pipeline_templates.index}
-\title{pipeline_templates.index is a method defined in Arvados class.}
-\usage{
-arv$pipeline_templates.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-PipelineTemplateList object.
-}
-\description{
-pipeline_templates.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/pipeline_templates.show.Rd b/sdk/R/man/pipeline_templates.show.Rd
deleted file mode 100644
index b71a39d..0000000
--- a/sdk/R/man/pipeline_templates.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{pipeline_templates.show}
-\alias{pipeline_templates.show}
-\title{pipeline_templates.show is a method defined in Arvados class.}
-\usage{
-arv$pipeline_templates.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-PipelineTemplate object.
-}
-\description{
-pipeline_templates.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/repositories.destroy.Rd b/sdk/R/man/repositories.destroy.Rd
deleted file mode 100644
index 15653df..0000000
--- a/sdk/R/man/repositories.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{repositories.destroy}
-\alias{repositories.destroy}
-\title{repositories.destroy is a method defined in Arvados class.}
-\usage{
-arv$repositories.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Repository object.
-}
-\description{
-repositories.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/repositories.index.Rd b/sdk/R/man/repositories.index.Rd
deleted file mode 100644
index 3fbb1d0..0000000
--- a/sdk/R/man/repositories.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{repositories.index}
-\alias{repositories.index}
-\title{repositories.index is a method defined in Arvados class.}
-\usage{
-arv$repositories.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-RepositoryList object.
-}
-\description{
-repositories.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/repositories.show.Rd b/sdk/R/man/repositories.show.Rd
deleted file mode 100644
index 4bfdc95..0000000
--- a/sdk/R/man/repositories.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{repositories.show}
-\alias{repositories.show}
-\title{repositories.show is a method defined in Arvados class.}
-\usage{
-arv$repositories.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Repository object.
-}
-\description{
-repositories.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/specimens.destroy.Rd b/sdk/R/man/specimens.destroy.Rd
deleted file mode 100644
index efee187..0000000
--- a/sdk/R/man/specimens.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{specimens.destroy}
-\alias{specimens.destroy}
-\title{specimens.destroy is a method defined in Arvados class.}
-\usage{
-arv$specimens.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Specimen object.
-}
-\description{
-specimens.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/specimens.index.Rd b/sdk/R/man/specimens.index.Rd
deleted file mode 100644
index 3688150..0000000
--- a/sdk/R/man/specimens.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{specimens.index}
-\alias{specimens.index}
-\title{specimens.index is a method defined in Arvados class.}
-\usage{
-arv$specimens.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-SpecimenList object.
-}
-\description{
-specimens.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/specimens.show.Rd b/sdk/R/man/specimens.show.Rd
deleted file mode 100644
index 32552e8..0000000
--- a/sdk/R/man/specimens.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{specimens.show}
-\alias{specimens.show}
-\title{specimens.show is a method defined in Arvados class.}
-\usage{
-arv$specimens.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Specimen object.
-}
-\description{
-specimens.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/traits.destroy.Rd b/sdk/R/man/traits.destroy.Rd
deleted file mode 100644
index 5c64670..0000000
--- a/sdk/R/man/traits.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{traits.destroy}
-\alias{traits.destroy}
-\title{traits.destroy is a method defined in Arvados class.}
-\usage{
-arv$traits.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Trait object.
-}
-\description{
-traits.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/traits.index.Rd b/sdk/R/man/traits.index.Rd
deleted file mode 100644
index 116a893..0000000
--- a/sdk/R/man/traits.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{traits.index}
-\alias{traits.index}
-\title{traits.index is a method defined in Arvados class.}
-\usage{
-arv$traits.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-TraitList object.
-}
-\description{
-traits.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/traits.show.Rd b/sdk/R/man/traits.show.Rd
deleted file mode 100644
index 96c4a2b..0000000
--- a/sdk/R/man/traits.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{traits.show}
-\alias{traits.show}
-\title{traits.show is a method defined in Arvados class.}
-\usage{
-arv$traits.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Trait object.
-}
-\description{
-traits.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/user_agreements.destroy.Rd b/sdk/R/man/user_agreements.destroy.Rd
deleted file mode 100644
index fbf6399..0000000
--- a/sdk/R/man/user_agreements.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{user_agreements.destroy}
-\alias{user_agreements.destroy}
-\title{user_agreements.destroy is a method defined in Arvados class.}
-\usage{
-arv$user_agreements.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-UserAgreement object.
-}
-\description{
-user_agreements.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/user_agreements.index.Rd b/sdk/R/man/user_agreements.index.Rd
deleted file mode 100644
index c3fa27d..0000000
--- a/sdk/R/man/user_agreements.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{user_agreements.index}
-\alias{user_agreements.index}
-\title{user_agreements.index is a method defined in Arvados class.}
-\usage{
-arv$user_agreements.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-UserAgreementList object.
-}
-\description{
-user_agreements.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/user_agreements.show.Rd b/sdk/R/man/user_agreements.show.Rd
deleted file mode 100644
index db05e12..0000000
--- a/sdk/R/man/user_agreements.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{user_agreements.show}
-\alias{user_agreements.show}
-\title{user_agreements.show is a method defined in Arvados class.}
-\usage{
-arv$user_agreements.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-UserAgreement object.
-}
-\description{
-user_agreements.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/users.destroy.Rd b/sdk/R/man/users.destroy.Rd
deleted file mode 100644
index 5abdf70..0000000
--- a/sdk/R/man/users.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{users.destroy}
-\alias{users.destroy}
-\title{users.destroy is a method defined in Arvados class.}
-\usage{
-arv$users.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-User object.
-}
-\description{
-users.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/users.index.Rd b/sdk/R/man/users.index.Rd
deleted file mode 100644
index 38df28b..0000000
--- a/sdk/R/man/users.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{users.index}
-\alias{users.index}
-\title{users.index is a method defined in Arvados class.}
-\usage{
-arv$users.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-UserList object.
-}
-\description{
-users.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/users.show.Rd b/sdk/R/man/users.show.Rd
deleted file mode 100644
index c85b1d4..0000000
--- a/sdk/R/man/users.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{users.show}
-\alias{users.show}
-\title{users.show is a method defined in Arvados class.}
-\usage{
-arv$users.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-User object.
-}
-\description{
-users.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/virtual_machines.destroy.Rd b/sdk/R/man/virtual_machines.destroy.Rd
deleted file mode 100644
index 0d84ef6..0000000
--- a/sdk/R/man/virtual_machines.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{virtual_machines.destroy}
-\alias{virtual_machines.destroy}
-\title{virtual_machines.destroy is a method defined in Arvados class.}
-\usage{
-arv$virtual_machines.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-VirtualMachine object.
-}
-\description{
-virtual_machines.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/virtual_machines.index.Rd b/sdk/R/man/virtual_machines.index.Rd
deleted file mode 100644
index c6da4dc..0000000
--- a/sdk/R/man/virtual_machines.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{virtual_machines.index}
-\alias{virtual_machines.index}
-\title{virtual_machines.index is a method defined in Arvados class.}
-\usage{
-arv$virtual_machines.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-VirtualMachineList object.
-}
-\description{
-virtual_machines.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/virtual_machines.show.Rd b/sdk/R/man/virtual_machines.show.Rd
deleted file mode 100644
index 83aea16..0000000
--- a/sdk/R/man/virtual_machines.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{virtual_machines.show}
-\alias{virtual_machines.show}
-\title{virtual_machines.show is a method defined in Arvados class.}
-\usage{
-arv$virtual_machines.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-VirtualMachine object.
-}
-\description{
-virtual_machines.show is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/workflows.destroy.Rd b/sdk/R/man/workflows.destroy.Rd
deleted file mode 100644
index aa0cd2e..0000000
--- a/sdk/R/man/workflows.destroy.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{workflows.destroy}
-\alias{workflows.destroy}
-\title{workflows.destroy is a method defined in Arvados class.}
-\usage{
-arv$workflows.destroy(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Workflow object.
-}
-\description{
-workflows.destroy is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/workflows.index.Rd b/sdk/R/man/workflows.index.Rd
deleted file mode 100644
index 4f2ebf3..0000000
--- a/sdk/R/man/workflows.index.Rd
+++ /dev/null
@@ -1,34 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{workflows.index}
-\alias{workflows.index}
-\title{workflows.index is a method defined in Arvados class.}
-\usage{
-arv$workflows.index(filters = NULL,
- where = NULL, order = NULL, select = NULL,
- distinct = NULL, limit = "100", offset = "0",
- count = "exact")
-}
-\arguments{
-\item{filters}{}
-
-\item{where}{}
-
-\item{order}{}
-
-\item{select}{}
-
-\item{distinct}{}
-
-\item{limit}{}
-
-\item{offset}{}
-
-\item{count}{}
-}
-\value{
-WorkflowList object.
-}
-\description{
-workflows.index is a method defined in Arvados class.
-}
diff --git a/sdk/R/man/workflows.show.Rd b/sdk/R/man/workflows.show.Rd
deleted file mode 100644
index 86c0521..0000000
--- a/sdk/R/man/workflows.show.Rd
+++ /dev/null
@@ -1,17 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/Arvados.R
-\name{workflows.show}
-\alias{workflows.show}
-\title{workflows.show is a method defined in Arvados class.}
-\usage{
-arv$workflows.show(uuid)
-}
-\arguments{
-\item{uuid}{}
-}
-\value{
-Workflow object.
-}
-\description{
-workflows.show is a method defined in Arvados class.
-}
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