[ARVADOS] updated: 1.3.0-24-gc031d4145

[Git user]

Summary of changes:
 apps/workbench/app/controllers/users_controller.rb |   2 +-
 .../app/controllers/work_units_controller.rb       |  18 ++-
 .../test/controllers/users_controller_test.rb      |   8 ++
 ...t-package-python27-python-arvados-cwl-runner.sh |   4 +
 build/run-build-docker-jobs-image.sh               |  31 ++++-
 doc/admin/upgrading.html.textile.liquid            |   8 ++
 doc/install/install-controller.html.textile.liquid |   2 +-
 doc/user/cwl/cwl-extensions.html.textile.liquid    |   2 +
 docker/jobs/apt.arvados.org.list                   |   1 -
 sdk/cli/arvados-cli.gemspec                        |   2 +-
 sdk/cwl/arvados_cwl/__init__.py                    |   6 +-
 sdk/cwl/arvados_cwl/arv-cwl-schema.yml             |   7 ++
 sdk/cwl/arvados_cwl/arvcontainer.py                |  16 +--
 sdk/cwl/arvados_cwl/arvjob.py                      |  18 +--
 sdk/cwl/arvados_cwl/arvtool.py                     |  14 ++-
 sdk/cwl/arvados_cwl/arvworkflow.py                 |   5 +-
 sdk/cwl/arvados_cwl/context.py                     |   1 +
 sdk/cwl/arvados_cwl/crunch_script.py               |   1 +
 sdk/cwl/arvados_cwl/executor.py                    |  92 ++++++++++-----
 sdk/cwl/arvados_cwl/fsaccess.py                    |  29 +++--
 sdk/cwl/arvados_cwl/runner.py                      |  33 ++++--
 sdk/cwl/arvados_cwl/task_queue.py                  |  52 +++++----
 sdk/cwl/arvados_version.py                         |   6 +-
 sdk/cwl/gittaggers.py                              |   6 +-
 sdk/cwl/setup.py                                   |   2 +-
 ..._test_job.json => submit_test_job_missing.json} |   9 --
 sdk/cwl/tests/test_fsaccess.py                     |  78 ++++++-------
 sdk/cwl/tests/test_submit.py                       | 128 +++++++++++++++------
 sdk/cwl/tests/test_tq.py                           |  40 ++++---
 sdk/cwl/tests/wf/submit_wf_runner_resources.cwl    |   1 +
 sdk/pam/arvados_version.py                         |   6 +-
 sdk/python/arvados_version.py                      |   6 +-
 sdk/python/gittaggers.py                           |   6 +-
 sdk/ruby/arvados.gemspec                           |   2 +-
 services/api/app/models/arvados_model.rb           |  15 ++-
 services/api/app/models/container.rb               |   8 --
 .../20180917200000_replace_full_text_indexes.rb    |  14 +++
 services/api/db/structure.sql                      |  16 +--
 services/api/test/unit/container_test.rb           |   9 +-
 services/dockercleaner/arvados_version.py          |   6 +-
 services/fuse/arvados_version.py                   |   6 +-
 services/login-sync/arvados-login-sync.gemspec     |   2 +-
 services/nodemanager/arvados_version.py            |   6 +-
 tools/crunchstat-summary/arvados_version.py        |   6 +-
 44 files changed, 472 insertions(+), 258 deletions(-)
 copy sdk/cwl/tests/{submit_test_job.json => submit_test_job_missing.json} (56%)
 create mode 100644 services/api/db/migrate/20180917200000_replace_full_text_indexes.rb

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commit c031d4145d8ab1a11463acf5b20ef4df1afe00a4
Merge: a88f7ad97 a63b5a039
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Mon Dec 10 11:38:35 2018 -0500

    14538: Merge branch 'master' into 14538-async-write
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>


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