[ARVADOS] updated: 1.3.0-14-g471ac0653

[Git user]

Summary of changes:
 apps/workbench/app/controllers/users_controller.rb |  2 +-
 .../test/controllers/users_controller_test.rb      |  8 ++++
 ...t-package-python27-python-arvados-cwl-runner.sh |  4 ++
 build/run-build-docker-jobs-image.sh               | 31 +++++++++++---
 doc/admin/upgrading.html.textile.liquid            |  8 ++++
 doc/install/install-controller.html.textile.liquid |  2 +-
 docker/jobs/apt.arvados.org.list                   |  1 -
 sdk/cwl/arvados_cwl/__init__.py                    |  2 +-
 sdk/cwl/arvados_cwl/arvcontainer.py                | 10 ++---
 sdk/cwl/arvados_cwl/arvjob.py                      | 18 ++++----
 sdk/cwl/arvados_cwl/arvtool.py                     | 14 ++++++-
 sdk/cwl/arvados_cwl/arvworkflow.py                 |  3 ++
 sdk/cwl/arvados_cwl/crunch_script.py               |  1 +
 sdk/cwl/arvados_cwl/executor.py                    | 48 ++++++++++-----------
 sdk/cwl/arvados_cwl/runner.py                      | 26 ++++++++----
 sdk/cwl/setup.py                                   |  2 +-
 ..._test_job.json => submit_test_job_missing.json} |  9 ----
 sdk/cwl/tests/test_submit.py                       | 49 +++++++++++++++-------
 services/api/app/models/arvados_model.rb           | 15 ++++---
 services/api/app/models/container.rb               |  8 ----
 .../20180917200000_replace_full_text_indexes.rb    | 14 +++++++
 services/api/db/structure.sql                      | 16 +++----
 services/api/test/unit/container_test.rb           |  9 ++--
 23 files changed, 193 insertions(+), 107 deletions(-)
 copy sdk/cwl/tests/{submit_test_job.json => submit_test_job_missing.json} (56%)
 create mode 100644 services/api/db/migrate/20180917200000_replace_full_text_indexes.rb

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commit 471ac065323e087f2f844d21d1c39929191eba71
Merge: 127e57b8e a63b5a039
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Mon Dec 10 11:37:40 2018 -0500

    11419: Merge branch 'master' into 11419-text-mode
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>


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