[ARVADOS] updated: cd206dc9f38a5d6c1cd115b53cb77be071edd57c
Git user
git at public.curoverse.com
Tue Jun 21 12:17:25 EDT 2016
Summary of changes:
sdk/cwl/arvados_cwl/__init__.py | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
via cd206dc9f38a5d6c1cd115b53cb77be071edd57c (commit)
from fbc5ee7656bb337f15b3b2b7c88473f29f40c8b0 (commit)
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commit cd206dc9f38a5d6c1cd115b53cb77be071edd57c
Author: Peter Amstutz <peter.amstutz at curoverse.com>
Date: Tue Jun 21 12:16:23 2016 -0400
8442: Make work_api parameter to ArvCwlRunner constructor optional.
diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 69c933c..9b30611 100644
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -34,7 +34,7 @@ class ArvCwlRunner(object):
"""
- def __init__(self, api_client, work_api):
+ def __init__(self, api_client, work_api=None):
self.api = api_client
self.processes = {}
self.lock = threading.Lock()
@@ -46,6 +46,10 @@ class ArvCwlRunner(object):
self.uuid = None
self.work_api = work_api
+ if self.work_api is None:
+ # todo: autodetect API to use.
+ self.work_api = "jobs"
+
if self.work_api not in ("containers", "jobs"):
raise Exception("Unsupported API '%s'" % self.work_api)
@@ -290,9 +294,6 @@ def main(args, stdout, stderr, api_client=None):
if arvargs.create_template and not arvargs.job_order:
job_order_object = ({}, "")
- if arvargs.work_api is None:
- arvargs.work_api = "jobs"
-
try:
if api_client is None:
api_client=arvados.api('v1', model=OrderedJsonModel())
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