[arvados] running cwl workflow on arvados

[Peter Amstutz]

Hi Sehrish,

Can you provide the whole output, and the command line you used?

Thanks,
Peter


On Jun 25, 2017 11:15, "Sehrish Kanwal" <skanwal at student.unimelb.edu.au>
wrote:

> Hi,
>
> I am new to arvados and trying to run my cwl workflow using it. I have
> setup my VM and have the directory structure setup like the one I had at my
> local machine.
> I am getting an error: Field `run` contains undefined reference to
> `file:///data-sdc/home/skanw al/keep2/home/New%20collection/BWA-mem.cwl`
> I think that is something to do with referencing files using/in keep. Can
> someone help me with that? More specifically how can I run my cwl workflow
> on arvados? What requirements do I need to fulfil before trying that?
> Thanks.
>
>
> Kind Regards,
> Sehrish Kanwal
> PhD Research Scholar
> Computing and Information Systems, Melbourne School of Engineering
> The University of Melbourne
>
>
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