[GET-dev] Problem with raw genome data of PGP6:hu04FD18

Clara Tang Clara.Tang at qimr.edu.au
Wed May 23 04:41:42 EDT 2012


I am sorry if this is not the right email list to send. When examining 
the raw genome data of PGP6:hu04FD18, I found a whole region of chr19 
missing (line number:26852942-26852943; loci 22831700-22854093; 

22831700    2    1    chr19    44411884    44411884    no-call        ?
22831700    2    2    chr19    44411884    44411884    ins        A    
46    46    VQHIGH        
22854093    2    1    chr19    46412254    46412255    ref    A    A    
182    182    VQHIGH    6318897

As the locus number is not contiguous, I assume there are quite a number 
of variants in between. May I know whether and how I can get the data of 
this region?

Thanks a lot.

Best wishes,

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