[GET-dev] PGP info

Ruth McCole rmccole at genetics.med.harvard.edu
Mon May 9 15:39:41 EDT 2011


A few things:

1. I have not received a GET-dev digest since March, have I missed some?

2. What is the difference between PGP 1-10 (with indel and coverage) and 
the other three? Are there scripts within get-evidence that check 
through different complete genomics files to compile this 'with indels 
and coverage' file?

3. Is CNV and SD evidence available for the PGP genomes? It seems to me 
that only 'short' indels (100bp or so) are available, from the look of 
the entries in the right-most column of these .gff files.

Many thanks,

Ruth McCole PhD
Postdoctoral Researcher
Wu Lab

Department of Genetics
Harvard Medical School
77 Avenue Louis Pasteur
Boston, MA 02115

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