[GET-dev] chrX data processing bugs

[Madeleine Price Ball]

In Chris's processing of "Lilly Mendel" data from 23andme, I noticed
there were no OMIM chrX results (but there were results in "other
hypotheses", there is no SNPedia data though). I went and clicking on
George's genome (
http://snp.med.harvard.edu/results/job/20/George_Church ) results and
was shocked to find no chrX findings at all! (Jay Shendure was right,
he's actually an alien.)

Looking over all the genomes, I get variable chrX findings, PGP1 and
PGP4 have no chrX findings, and there are cases where OMIM or SNPedia
chrX results are missing. While some of these could simply be because
there are no findings to be had, it seems like the processing of chrX
results needs to be checked.

   - Madeleine

No chrX results at all:
PGP1, PGP4

Other hypotheses only:
J Craig Venter (HuRef)
"Lilly Mendel": http://chris.printf.net/Lilly.html  (SNPedia not
tested, raw data: http://chris.printf.net/genotype.dbsnp.gff )

SNPedia & Other hypotheses:
Seong-Jin Kim (SJK)

OMIM & Other hypotheses:
PGP11
Stephen Quake (P0)

OMIM & SNPedia & Other hypotheses:
Desmond Tutu (ABT), !Ai, etc.
James Watson (JW)
NA18507
NA19240
NA07022