[arvados] updated: 2.7.0-5879-g75fbb4eabf

git repository hosting git at public.arvados.org
Wed Jan 17 22:53:10 UTC 2024


Summary of changes:
 build/build-dev-docker-jobs-image.sh               |  67 +-----
 .../package-build-dockerfiles/debian12/Dockerfile  |  16 +-
 build/package-build-dockerfiles/rocky8/Dockerfile  |  10 +-
 .../ubuntu2204/Dockerfile                          |  16 +-
 build/package-testing/deb-common-test-packages.sh  |  22 +-
 build/run-build-packages-one-target.sh             |   8 +
 build/run-build-packages.sh                        |  45 ++--
 build/run-library.sh                               | 262 +++------------------
 doc/_config.yml                                    |   4 +
 doc/_includes/_google_analytics.liquid             |  21 ++
 doc/_includes/_hpc_max_gateway_tunnels.liquid      |  18 ++
 doc/_includes/_matomo_analytics.liquid             |  16 ++
 doc/_layouts/default.html.liquid                   |  17 +-
 doc/admin/keep-faster-gc-s3.html.textile.liquid    |   6 +-
 doc/admin/scoped-tokens.html.textile.liquid        |  17 +-
 doc/admin/upgrading.html.textile.liquid            |   4 +
 .../install-dispatch.html.textile.liquid           |   2 +
 .../install-dispatch.html.textile.liquid           |   2 +
 docker/jobs/Dockerfile                             |  24 +-
 docker/jobs/apt.arvados.org-dev.list               |   2 +-
 docker/jobs/apt.arvados.org-stable.list            |   2 +-
 docker/jobs/apt.arvados.org-testing.list           |   2 +-
 lib/config/config.default.yml                      |  11 +
 lib/config/export.go                               |   1 +
 lib/controller/handler_test.go                     |   1 +
 lib/controller/rpc/conn.go                         |   4 +-
 lib/crunchrun/container_gateway.go                 |   2 +-
 lib/dispatchcloud/dispatcher_test.go               |  17 +-
 lib/dispatchcloud/scheduler/run_queue.go           |   4 +-
 lib/service/cmd.go                                 | 121 +++++++---
 lib/service/cmd_test.go                            | 113 +++++++--
 sdk/cwl/arvados_cwl/__init__.py                    |  22 +-
 sdk/dev-jobs.dockerfile                            |  46 +---
 sdk/go/arvados/config.go                           |   1 +
 sdk/go/arvadostest/proxy.go                        |  14 ++
 sdk/go/httpserver/request_limiter.go               | 167 +++++++------
 sdk/go/httpserver/request_limiter_test.go          |  49 ++--
 sdk/python/tests/nginx.conf                        |   1 -
 services/api/app/models/collection.rb              |  12 +-
 services/api/app/models/user.rb                    |  93 ++++++--
 .../admin_notifier/new_inactive_user.text.erb      |   9 +-
 .../api/app/views/admin_notifier/new_user.text.erb |  16 +-
 .../views/user_notifier/account_is_setup.text.erb  |   2 +-
 services/api/test/integration/remote_user_test.rb  |  25 +-
 services/api/test/unit/user_test.rb                |  10 +-
 services/keep-balance/balance_run_test.go          |  34 +++
 services/keep-balance/metrics.go                   |  89 ++++++-
 services/workbench2/.yarn/releases/yarn-3.2.0.cjs  |   2 +-
 .../cypress/integration/collection.spec.js         |  43 ++++
 .../integration/multiselect-toolbar.spec.js        |  36 +++
 .../workbench2/cypress/integration/process.spec.js |  43 ++++
 .../workbench2/cypress/integration/project.spec.js |  47 +++-
 .../integration/virtual-machine-admin.spec.js      |  18 +-
 .../cypress/integration/workflow.spec.js           |  27 +++
 services/workbench2/src/common/config.ts           |  22 ++
 services/workbench2/src/common/formatters.test.ts  |  68 +++++-
 services/workbench2/src/common/formatters.ts       |  17 +-
 .../components/breadcrumbs/breadcrumbs.test.tsx    |   2 +-
 .../src/components/breadcrumbs/breadcrumbs.tsx     |  12 +-
 .../src/components/code-snippet/code-snippet.tsx   |  22 +-
 .../copy-to-clipboard-snackbar.tsx                 |   2 +-
 .../src/components/data-explorer/data-explorer.tsx |  20 +-
 .../src/components/data-table/data-table.tsx       |  50 +++-
 services/workbench2/src/components/icon/icon.tsx   |   6 +-
 .../multiselect-toolbar/MultiselectToolbar.tsx     | 260 +++++++++++++++-----
 .../ms-kind-action-differentiator.ts               |  12 +-
 .../ms-toolbar-action-filters.ts                   | 128 ++++++++--
 .../workbench2/src/routes/route-change-handlers.ts |   3 +
 services/workbench2/src/routes/routes.ts           |   6 +-
 .../src/store/breadcrumbs/breadcrumbs-actions.ts   |  54 ++++-
 .../store/collections/collection-info-actions.ts   |  82 ++++++-
 .../store/details-panel/details-panel-action.ts    |  13 +-
 .../store/details-panel/details-panel-reducer.ts   |   6 +-
 .../src/store/favorites/favorites-actions.ts       |   4 +
 .../src/store/multiselect/multiselect-actions.tsx  |  83 ++++++-
 .../src/store/multiselect/multiselect-reducer.tsx  |  34 ++-
 .../src/store/navigation/navigation-action.ts      |  13 +-
 .../store/process-panel/process-panel-actions.ts   |   7 +-
 .../project-panel-middleware-service.ts            |   7 +-
 .../src/store/projects/project-lock-actions.ts     |  10 +-
 .../public-favorites/public-favorites-actions.ts   |   4 +
 .../side-panel-tree/side-panel-tree-actions.ts     |   4 +-
 .../src/store/side-panel/side-panel-action.ts      |   9 +-
 .../src/store/side-panel/side-panel-reducer.tsx    |   7 +-
 .../trash-panel/trash-panel-middleware-service.ts  |   4 +-
 .../workbench2/src/store/trash/trash-actions.ts    |  10 +-
 .../src/store/workbench/workbench-actions.ts       |  27 ++-
 .../views-components/breadcrumbs/breadcrumbs.ts    |   5 +-
 .../action-sets/process-resource-action-set.ts     |   4 +-
 .../views-components/context-menu/context-menu.tsx |   1 -
 .../data-explorer/data-explorer.tsx                |  19 +-
 .../views-components/data-explorer/renderers.tsx   |  11 +-
 .../details-panel/details-panel.tsx                |   7 +-
 .../views-components/main-app-bar/account-menu.tsx |   4 +-
 .../views-components/main-app-bar/admin-menu.tsx   |   3 +-
 .../ms-collection-action-set.ts                    | 108 +++++++--
 .../multiselect-toolbar/ms-menu-actions.ts         | 144 +++++++++++
 .../multiselect-toolbar/ms-process-action-set.ts   | 115 ++++++---
 .../multiselect-toolbar/ms-project-action-set.ts   | 156 ++++++++++--
 .../multiselect-toolbar/ms-workflow-action-set.ts  |  46 ++++
 .../side-panel-button/side-panel-button.tsx        |   2 +-
 .../side-panel-toggle/side-panel-toggle.tsx        |   1 +
 .../side-panel-tree/side-panel-tree.tsx            |   5 +-
 .../side-panel/side-panel-collapsed.tsx            |  12 +-
 .../src/views-components/side-panel/side-panel.tsx |  68 ++++--
 .../all-processes-panel/all-processes-panel.tsx    |   2 +
 .../views/collection-panel/collection-panel.tsx    |   2 +-
 .../src/views/favorite-panel/favorite-panel.tsx    |   3 +
 .../instance-types-panel.test.tsx                  | 112 +++++++++
 .../instance-types-panel/instance-types-panel.tsx  | 148 ++++++++++++
 .../src/views/main-panel/main-panel-root.tsx       |  12 +-
 .../workbench2/src/views/main-panel/main-panel.tsx |   2 +
 .../process-panel/process-details-attributes.tsx   |  10 +-
 .../views/process-panel/process-resource-card.tsx  |   4 +-
 .../src/views/project-panel/project-panel.tsx      |   3 +
 .../public-favorites-panel.tsx                     |   5 +-
 .../search-results-panel/search-results-panel.tsx  |   3 +
 .../shared-with-me-panel/shared-with-me-panel.tsx  |   3 +
 .../subprocess-panel/subprocess-panel-root.tsx     |   4 +-
 .../views/subprocess-panel/subprocess-panel.tsx    |   5 +-
 .../src/views/trash-panel/trash-panel.tsx          |   3 +
 .../workbench2/src/views/workbench/workbench.tsx   |  72 ++++--
 services/workbench2/yarn.lock                      |   6 +-
 services/ws/session_v0_test.go                     |  35 +++
 tools/arvbox/bin/arvbox                            |   8 +
 tools/arvbox/lib/arvbox/docker/service/nginx/run   |   1 -
 .../aws/dashboards/arvados_overview.json           |   2 +-
 .../multi_host/aws/pillars/arvados.sls             |   2 +
 .../aws/pillars/nginx_balancer_configuration.sls   |  11 +-
 .../multi_host/aws/pillars/nginx_passenger.sls     |   8 +-
 .../aws/pillars/nginx_workbench_configuration.sls  |   1 -
 .../pillars/nginx_workbench_configuration.sls      |   1 -
 .../local.params.example.multiple_hosts            |   4 +-
 tools/salt-install/provision.sh                    |   1 +
 tools/user-activity/arvados_user_activity/main.py  |   4 +-
 135 files changed, 2848 insertions(+), 1011 deletions(-)
 create mode 100644 doc/_includes/_google_analytics.liquid
 create mode 100644 doc/_includes/_hpc_max_gateway_tunnels.liquid
 create mode 100644 doc/_includes/_matomo_analytics.liquid
 create mode 100644 services/workbench2/cypress/integration/multiselect-toolbar.spec.js
 create mode 100644 services/workbench2/src/views-components/multiselect-toolbar/ms-menu-actions.ts
 create mode 100644 services/workbench2/src/views-components/multiselect-toolbar/ms-workflow-action-set.ts
 create mode 100644 services/workbench2/src/views/instance-types-panel/instance-types-panel.test.tsx
 create mode 100644 services/workbench2/src/views/instance-types-panel/instance-types-panel.tsx

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commit 75fbb4eabf0da2fceebf8196bec769e4cbc6547b
Merge: 5a950ae4a1 44c2f57900
Author: Tom Clegg <tom at curii.com>
Date:   Wed Jan 17 17:51:34 2024 -0500

    Merge branch '20318-disk-cache'
    
    closes #20318
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at curii.com>

diff --cc doc/admin/upgrading.html.textile.liquid
index 6d37009e91,7b8c20fdf9..c802098225
--- a/doc/admin/upgrading.html.textile.liquid
+++ b/doc/admin/upgrading.html.textile.liquid
@@@ -32,10 -32,12 +32,16 @@@ h2(#main). development mai
  
  "previous: Upgrading to 2.7.1":#v2_7_1
  
+ h3. WebDAV service uses @/var/cache@ for file content
+ 
+ @keep-web@ now stores copies of recently accessed data blocks in @/var/cache/arvados/keep@ instead of in memory. That directory will be created automatically. The default cache size is 10% of the filesystem size. Use the new @Collections.WebDAVCache.DiskCacheSize@ config to specify a different percentage or an absolute size.
+ 
+ If the previously supported @MaxBlockEntries@ config is present, remove it to avoid warning messages at startup.
+ 
 +h3. Check MaxGatewayTunnels config
 +
 +If you use the LSF or Slurm dispatcher, ensure the new @API.MaxGatewayTunnels@ config entry is high enough to support the size of your cluster. See "LSF docs":{{site.baseurl}}/install/crunch2-lsf/install-dispatch.html#MaxGatewayTunnels or "Slurm docs":{{site.baseurl}}/install/crunch2-slurm/install-dispatch.html#MaxGatewayTunnels for details.
 +
  h2(#2_7_1). v2.7.1 (2023-12-12)
  
  "previous: Upgrading to 2.7.0":#v2_7_0

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