[arvados] updated: 2.7.0-5651-g461fdaa1b9
git repository hosting
git at public.arvados.org
Wed Dec 20 22:40:39 UTC 2023
Summary of changes:
build/get-package-version.sh | 2 +-
build/package-build-dockerfiles/Makefile | 23 +-
build/package-build-dockerfiles/centos7/Dockerfile | 18 +-
.../package-build-dockerfiles/debian10/Dockerfile | 18 +-
.../package-build-dockerfiles/debian11/Dockerfile | 18 +-
.../{debian11 => debian12}/Dockerfile | 23 +-
build/package-build-dockerfiles/rocky8/Dockerfile | 18 +-
.../ubuntu1804/Dockerfile | 18 +-
.../ubuntu2004/Dockerfile | 18 +-
.../{ubuntu2004 => ubuntu2204}/Dockerfile | 25 +-
.../{ubuntu2004 => ubuntu2204}/ports.list | 8 +-
build/package-test-dockerfiles/Makefile | 18 +-
.../{debian11 => debian12}/Dockerfile | 8 +-
.../{ubuntu2004 => ubuntu2204}/Dockerfile | 10 +-
...kages-debian10.sh => test-packages-debian12.sh} | 0
...ges-debian10.sh => test-packages-ubuntu2204.sh} | 0
build/run-build-packages-one-target.sh | 2 +-
build/run-build-packages.sh | 3 +
build/run-library.sh | 40 +-
build/run-tests.sh | 3 +-
doc/Gemfile.lock | 2 +-
doc/_config.yml | 1 +
doc/_includes/_install_ruby_and_bundler.liquid | 77 +---
doc/admin/keep-balance.html.textile.liquid | 6 +-
doc/admin/keep-faster-gc-s3.html.textile.liquid | 41 ++
doc/admin/upgrading.html.textile.liquid | 8 +
doc/api/keep-webdav.html.textile.liquid | 6 +
doc/api/methods/groups.html.textile.liquid | 2 +-
.../install-keep-balance.html.textile.liquid | 2 +-
doc/install/salt-multi-host.html.textile.liquid | 17 +-
doc/install/salt-single-host.html.textile.liquid | 10 +-
doc/sdk/python/arvados-fuse.html.textile.liquid | 4 -
go.mod | 31 +-
go.sum | 96 ++--
lib/boot/supervisor.go | 23 +-
lib/controller/federation/conn.go | 72 ++-
lib/controller/federation/user_test.go | 4 +-
lib/controller/localdb/container_test.go | 1 +
lib/controller/localdb/login_oidc.go | 46 +-
lib/controller/localdb/login_oidc_test.go | 70 +++
lib/controller/rpc/conn.go | 33 +-
lib/dispatchcloud/dispatcher_test.go | 7 +-
lib/dispatchcloud/test/stub_driver.go | 34 +-
sdk/go/arvados/api.go | 2 +
sdk/go/arvados/client.go | 68 ++-
sdk/go/arvados/client_test.go | 14 +
sdk/go/arvados/fs_base.go | 93 +++-
sdk/go/arvados/fs_collection.go | 2 +-
sdk/go/arvados/fs_lookup.go | 14 +-
sdk/go/arvados/fs_project.go | 5 +-
sdk/go/arvados/fs_project_test.go | 111 +++--
sdk/go/arvados/fs_site.go | 8 +
sdk/go/arvados/fs_site_test.go | 10 +
sdk/go/arvadostest/api.go | 4 +
sdk/go/arvadostest/fixtures.go | 5 +-
sdk/go/arvadostest/oidc_provider.go | 21 +-
sdk/go/auth/auth.go | 12 +-
sdk/go/auth/handlers_test.go | 36 +-
sdk/go/keepclient/keepclient.go | 21 +
.../client/api/client/CountingFileRequestBody.java | 43 +-
.../client/api/client/CountingRequestBody.java | 52 +++
.../api/client/CountingStreamRequestBody.java | 47 ++
.../client/api/client/KeepServerApiClient.java | 2 +-
.../client/api/client/KeepWebApiClient.java | 11 +
.../client/config/ExternalConfigProvider.java | 30 +-
.../facade/ArvadosFacadeIntegrationTest.java | 3 +
sdk/python/arvados-v1-discovery.json | 2 +-
sdk/python/arvados/__init__.py | 53 ++-
sdk/python/arvados/api.py | 77 ++--
sdk/python/arvados/events.py | 487 ++++++++++++++------
sdk/python/arvados/retry.py | 60 ++-
sdk/python/arvados/safeapi.py | 45 +-
sdk/python/arvados/util.py | 502 +++++++++++++--------
sdk/python/discovery2pydoc.py | 89 +++-
sdk/python/setup.py | 10 +-
sdk/python/tests/run_test_server.py | 10 +-
sdk/python/tests/test_events.py | 214 ++++++---
.../controllers/arvados/v1/schema_controller.rb | 2 +-
.../app/controllers/arvados/v1/users_controller.rb | 45 +-
.../api/app/models/api_client_authorization.rb | 64 +--
services/api/app/models/arvados_model.rb | 45 +-
services/api/app/models/link.rb | 11 +-
services/api/app/models/user.rb | 120 ++++-
services/api/lib/simulate_job_log.rb | 62 ---
services/api/lib/tasks/replay_job_log.rake | 11 -
services/api/lib/update_permissions.rb | 67 ++-
services/api/test/fixtures/links.yml | 14 +
.../arvados/v1/collections_controller_test.rb | 4 +-
.../arvados/v1/groups_controller_test.rb | 4 +-
.../functional/arvados/v1/users_controller_test.rb | 11 +-
services/api/test/integration/users_test.rb | 6 +-
services/api/test/unit/container_request_test.rb | 6 +-
services/api/test/unit/user_test.rb | 10 +-
services/fuse/arvados_fuse/command.py | 31 +-
services/fuse/tests/test_command_args.py | 45 ++
services/keep-balance/balance_run_test.go | 78 +++-
services/keep-balance/server.go | 9 +-
services/keep-web/cache.go | 2 +-
services/keep-web/handler_test.go | 69 ++-
services/keep-web/server_test.go | 2 +-
services/keepproxy/keepproxy.go | 50 +-
services/keepstore/proxy_remote.go | 4 +-
services/keepstore/pull_worker.go | 4 +-
services/workbench2/Makefile | 3 +
.../workbench2/cypress/integration/process.spec.js | 47 ++
.../cypress/integration/side-panel.spec.js | 37 ++
services/workbench2/package.json | 9 +-
services/workbench2/public/arrow-to-left.png | Bin 10416 -> 0 bytes
services/workbench2/public/arrow-to-right.png | Bin 10484 -> 0 bytes
services/workbench2/public/collapseLHS-New.svg | 25 -
services/workbench2/public/mui-start-icon.svg | 1 +
.../src/components/data-explorer/data-explorer.tsx | 67 +--
services/workbench2/src/components/icon/icon.tsx | 7 +
.../multiselect-toolbar/MultiselectToolbar.tsx | 1 +
.../subprocess-progress-bar.test.tsx | 165 +++++++
.../subprocess-progress-bar.tsx | 105 +++++
services/workbench2/src/components/tree/tree.tsx | 41 +-
services/workbench2/src/index.tsx | 3 +
.../src/store/favorites/favorites-actions.ts | 2 +
.../src/store/navigation/navigation-action.ts | 3 +
.../process-logs-panel-actions.ts | 59 ++-
.../public-favorites/public-favorites-actions.ts | 2 +
.../side-panel-tree/side-panel-tree-actions.ts | 114 +++--
.../subprocess-panel/subprocess-panel-actions.ts | 81 ++++
.../store/tree-picker/tree-picker-actions.test.ts | 5 +-
.../src/store/workbench/workbench-actions.ts | 3 +-
.../views-components/data-explorer/renderers.tsx | 24 +
.../side-panel-toggle/side-panel-toggle.tsx | 15 +-
.../side-panel-tree/side-panel-tree.tsx | 6 +-
.../side-panel/side-panel-collapsed.tsx | 159 +++++++
.../src/views-components/side-panel/side-panel.tsx | 8 +-
.../src/views/process-panel/process-panel-root.tsx | 2 +-
.../shared-with-me-panel/shared-with-me-panel.tsx | 198 ++++++++
.../subprocess-panel/subprocess-panel-root.tsx | 6 +-
.../views/subprocess-panel/subprocess-panel.tsx | 2 +-
.../workbench2/src/views/workbench/workbench.tsx | 4 +-
services/workbench2/yarn.lock | 116 +++--
services/ws/session_v0.go | 1 +
tools/arvbox/bin/arvbox | 18 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.demo | 3 -
tools/arvbox/lib/arvbox/docker/common.sh | 32 +-
tools/arvbox/lib/arvbox/docker/go-setup.sh | 1 +
tools/arvbox/lib/arvbox/docker/service/nginx/run | 12 +-
.../lib/arvbox/docker/service/sdk/run-service | 6 +-
.../lib/arvbox/docker/service/vm/run-service | 3 +-
.../arvbox/docker/service/workbench2/run-service | 10 +-
.../multi_host/aws/pillars/arvados.sls | 5 +-
.../multi_host/aws/pillars/nginx_passenger.sls | 29 --
.../multi_host/aws/pillars/nginx_snippets.sls | 35 ++
.../multiple_hostnames/pillars/arvados.sls | 5 +-
.../single_hostname/pillars/arvados.sls | 5 +-
tools/salt-install/installer.sh | 2 +-
tools/salt-install/local.params.secrets.example | 1 -
tools/salt-install/provision.sh | 38 +-
154 files changed, 3919 insertions(+), 1412 deletions(-)
copy build/package-build-dockerfiles/{debian11 => debian12}/Dockerfile (83%)
copy build/package-build-dockerfiles/{ubuntu2004 => ubuntu2204}/Dockerfile (81%)
copy build/package-build-dockerfiles/{ubuntu2004 => ubuntu2204}/ports.list (59%)
copy build/package-test-dockerfiles/{debian11 => debian12}/Dockerfile (76%)
copy build/package-test-dockerfiles/{ubuntu2004 => ubuntu2204}/Dockerfile (67%)
copy build/package-testing/{test-packages-debian10.sh => test-packages-debian12.sh} (100%)
copy build/package-testing/{test-packages-debian10.sh => test-packages-ubuntu2204.sh} (100%)
create mode 100644 doc/admin/keep-faster-gc-s3.html.textile.liquid
create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/CountingRequestBody.java
create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/CountingStreamRequestBody.java
delete mode 100644 services/api/lib/simulate_job_log.rb
delete mode 100644 services/api/lib/tasks/replay_job_log.rake
delete mode 100644 services/workbench2/public/arrow-to-left.png
delete mode 100644 services/workbench2/public/arrow-to-right.png
delete mode 100644 services/workbench2/public/collapseLHS-New.svg
create mode 100644 services/workbench2/public/mui-start-icon.svg
create mode 100644 services/workbench2/src/components/subprocess-progress-bar/subprocess-progress-bar.test.tsx
create mode 100644 services/workbench2/src/components/subprocess-progress-bar/subprocess-progress-bar.tsx
create mode 100644 services/workbench2/src/views-components/side-panel/side-panel-collapsed.tsx
create mode 100644 tools/salt-install/config_examples/multi_host/aws/pillars/nginx_snippets.sls
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commit 461fdaa1b96142b8065c131ae0334046fc71ea56
Merge: dbd3e4e8a3 afc02fe04d
Author: Tom Clegg <tom at curii.com>
Date: Wed Dec 20 17:40:10 2023 -0500
20318: Merge branch 'main' into 20318-disk-cache
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at curii.com>
diff --cc sdk/go/keepclient/keepclient.go
index 4e935812be,86001c01e0..08fa455ff4
--- a/sdk/go/keepclient/keepclient.go
+++ b/sdk/go/keepclient/keepclient.go
@@@ -122,10 -118,29 +122,31 @@@ type KeepClient struct
// Disable automatic discovery of keep services
disableDiscovery bool
+
+ gatewayStack arvados.KeepGateway
}
+ func (kc *KeepClient) Clone() *KeepClient {
+ kc.lock.Lock()
+ defer kc.lock.Unlock()
+ return &KeepClient{
+ Arvados: kc.Arvados,
+ Want_replicas: kc.Want_replicas,
+ localRoots: kc.localRoots,
+ writableLocalRoots: kc.writableLocalRoots,
+ gatewayRoots: kc.gatewayRoots,
+ HTTPClient: kc.HTTPClient,
+ Retries: kc.Retries,
+ BlockCache: kc.BlockCache,
+ RequestID: kc.RequestID,
+ StorageClasses: kc.StorageClasses,
+ DefaultStorageClasses: kc.DefaultStorageClasses,
+ replicasPerService: kc.replicasPerService,
+ foundNonDiskSvc: kc.foundNonDiskSvc,
+ disableDiscovery: kc.disableDiscovery,
+ }
+ }
+
func (kc *KeepClient) loadDefaultClasses() error {
scData, err := kc.Arvados.ClusterConfig("StorageClasses")
if err != nil {
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