[arvados-workbench2] created: 2.6.3-51-g8dbd060c

git repository hosting git at public.arvados.org
Tue Aug 8 21:20:15 UTC 2023


        at  8dbd060cdc504973ca88a8bf806dc7eb3f8df31b (commit)


commit 8dbd060cdc504973ca88a8bf806dc7eb3f8df31b
Author: Peter Amstutz <peter.amstutz at curii.com>
Date:   Tue Aug 8 17:18:41 2023 -0400

    20513: Add "Workflow code" link to details
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>

diff --git a/src/views/process-panel/process-details-attributes.tsx b/src/views/process-panel/process-details-attributes.tsx
index 7bdf8897..4979e391 100644
--- a/src/views/process-panel/process-details-attributes.tsx
+++ b/src/views/process-panel/process-details-attributes.tsx
@@ -13,7 +13,7 @@ import { CollectionName, ContainerRunTime, ResourceWithName } from "views-compon
 import { getProcess, getProcessStatus } from "store/processes/process";
 import { RootState } from "store/store";
 import { connect } from "react-redux";
-import { ProcessResource } from "models/process";
+import { ProcessResource, MOUNT_PATH_CWL_WORKFLOW } from "models/process";
 import { ContainerResource } from "models/container";
 import { navigateToOutput, openWorkflow } from "store/process-panel/process-panel-actions";
 import { ArvadosTheme } from "common/custom-theme";
@@ -21,6 +21,8 @@ import { ProcessRuntimeStatus } from "views-components/process-runtime-status/pr
 import { getPropertyChip } from "views-components/resource-properties-form/property-chip";
 import { ContainerRequestResource } from "models/container-request";
 import { filterResources } from "store/resources/resources";
+import { JSONMount } from 'models/mount-types';
+import { getCollectionUrl } from 'models/collection';
 
 type CssRules = 'link' | 'propertyTag';
 
@@ -40,8 +42,31 @@ const styles: StyleRulesCallback<CssRules> = (theme: ArvadosTheme) => ({
 
 const mapStateToProps = (state: RootState, props: { request: ProcessResource }) => {
     const process = getProcess(props.request.uuid)(state.resources);
+
+    let workflowCollection = "";
+    let workflowPath = "";
+    if (process?.containerRequest?.mounts && process.containerRequest.mounts[MOUNT_PATH_CWL_WORKFLOW]) {
+        const wf = process.containerRequest.mounts[MOUNT_PATH_CWL_WORKFLOW] as JSONMount;
+
+        if (wf.content["$graph"] &&
+            wf.content["$graph"].length > 0 &&
+            wf.content["$graph"][0] &&
+            wf.content["$graph"][0]["steps"] &&
+            wf.content["$graph"][0]["steps"][0]) {
+
+            const REGEX = /keep:([0-9a-f]{32}\+\d+)\/(.*)/;
+            const pdh = wf.content["$graph"][0]["steps"][0].run.match(REGEX);
+            if (pdh) {
+                workflowCollection = pdh[1];
+                workflowPath = pdh[2];
+            }
+        }
+    }
+
     return {
         container: process?.container,
+        workflowCollection,
+        workflowPath,
         subprocesses: filterResources((resource: ContainerRequestResource) =>
             resource.kind === ResourceKind.CONTAINER_REQUEST &&
             resource.requestingContainerUuid === process?.containerRequest.containerUuid
@@ -61,14 +86,20 @@ const mapDispatchToProps = (dispatch: Dispatch): ProcessDetailsAttributesActionP
 
 export const ProcessDetailsAttributes = withStyles(styles, { withTheme: true })(
     connect(mapStateToProps, mapDispatchToProps)(
-        (props: { request: ProcessResource, container?: ContainerResource, subprocesses: ContainerRequestResource[], twoCol?: boolean, hideProcessPanelRedundantFields?: boolean, classes: Record<CssRules, string> } & ProcessDetailsAttributesActionProps) => {
+        (props: {
+            request: ProcessResource, container?: ContainerResource, subprocesses: ContainerRequestResource[],
+            workflowCollection, workflowPath,
+            twoCol?: boolean, hideProcessPanelRedundantFields?: boolean, classes: Record<CssRules, string>
+        } & ProcessDetailsAttributesActionProps) => {
             const containerRequest = props.request;
             const container = props.container;
             const subprocesses = props.subprocesses;
             const classes = props.classes;
             const mdSize = props.twoCol ? 6 : 12;
+            const workflowCollection = props.workflowCollection;
+            const workflowPath = props.workflowPath;
             const filteredPropertyKeys = Object.keys(containerRequest.properties)
-                                            .filter(k => (typeof containerRequest.properties[k] !== 'object'));
+                .filter(k => (typeof containerRequest.properties[k] !== 'object'));
             return <Grid container>
                 <Grid item xs={12}>
                     <ProcessRuntimeStatus runtimeStatus={container?.runtimeStatus} containerCount={containerRequest.containerCount} />
@@ -128,8 +159,13 @@ export const ProcessDetailsAttributes = withStyles(styles, { withTheme: true })(
                     </span>}
                 </Grid>
                 {container && container.cost > 0 && <Grid item xs={12} md={mdSize}>
-                        <DetailsAttribute label='Cost ' value={formatContainerCost(container.cost)} />
+                    <DetailsAttribute label='Cost ' value={formatContainerCost(container.cost)} />
                 </Grid>}
+
+            {container && workflowCollection && <Grid item xs={12} md={mdSize}>
+                <DetailsAttribute label='Workflow code' link={getCollectionUrl(workflowCollection)} value={workflowPath} />
+            </Grid>}
+
                 {containerRequest && containerRequest.cumulativeCost > 0 && subprocesses.length > 0 && <Grid item xs={12} md={mdSize}>
                     <DetailsAttribute label='Container & subprocess cost' value={formatContainerCost(containerRequest.cumulativeCost)} />
                 </Grid>}
@@ -144,9 +180,9 @@ export const ProcessDetailsAttributes = withStyles(styles, { withTheme: true })(
                     <DetailsAttribute label='Priority' value={containerRequest.priority} />
                 </Grid>
                 {/*
-                    NOTE: The property list should be kept at the bottom, because it spans
-                    the entire available width, without regards of the twoCol prop.
-                */}
+                NOTE: The property list should be kept at the bottom, because it spans
+                the entire available width, without regards of the twoCol prop.
+              */}
                 <Grid item xs={12} md={12}>
                     <DetailsAttribute label='Properties' />
                     {filteredPropertyKeys.length > 0

-----------------------------------------------------------------------


hooks/post-receive
-- 




More information about the arvados-commits mailing list