[arvados] updated: 2.1.0-3068-g5a3376468
git repository hosting
git at public.arvados.org
Mon Nov 21 14:42:16 UTC 2022
Summary of changes:
.gitignore | 4 -
build/package-build-dockerfiles/centos7/Dockerfile | 2 +-
build/run-build-packages-one-target.sh | 1 -
build/run-build-packages.sh | 5 -
build/run-library.sh | 34 ---
build/run-tests.sh | 22 +-
doc/_config.yml | 3 -
.../maintenance-and-upgrading.html.textile.liquid | 3 +
.../install-dispatch-cloud.html.textile.liquid | 38 ++--
.../install-dispatch.html.textile.liquid | 25 +++
.../crunch2-slurm/install-test.html.textile.liquid | 30 +--
doc/sdk/index.html.textile.liquid | 1 -
doc/sdk/perl/example.html.textile.liquid | 77 -------
doc/sdk/perl/index.html.textile.liquid | 66 ------
lib/config/config.default.yml | 2 +-
lib/dispatchcloud/node_size.go | 7 +-
lib/dispatchcloud/node_size_test.go | 30 ++-
lib/install/deps.go | 18 +-
lib/lsf/dispatch_test.go | 1 +
lib/pam/testclient.go | 2 +-
sdk/cwl/arvados_cwl/__init__.py | 18 ++
sdk/cwl/arvados_cwl/arvcontainer.py | 17 +-
sdk/cwl/arvados_cwl/arvworkflow.py | 93 ++++++++-
sdk/cwl/arvados_cwl/context.py | 3 +
sdk/cwl/arvados_cwl/executor.py | 31 ++-
sdk/cwl/arvados_cwl/fsaccess.py | 9 +-
sdk/cwl/arvados_cwl/http.py | 106 ++++++++--
sdk/cwl/arvados_cwl/pathmapper.py | 15 +-
sdk/cwl/setup.py | 4 +-
.../collection_per_tool_wrapper.cwl | 35 ++++
sdk/cwl/tests/test_http.py | 165 ++++++++++++++-
sdk/cwl/tests/test_submit.py | 232 +++++++++++++--------
...upload_packed.cwl => expect_upload_wrapper.cwl} | 51 ++---
...acked.cwl => expect_upload_wrapper_altname.cwl} | 51 ++---
sdk/perl/.gitignore | 1 -
sdk/perl/Makefile.PL | 18 --
sdk/perl/lib/Arvados.pm | 165 ---------------
sdk/perl/lib/Arvados/Request.pm | 104 ---------
sdk/perl/lib/Arvados/ResourceAccessor.pm | 25 ---
sdk/perl/lib/Arvados/ResourceMethod.pm | 124 -----------
sdk/perl/lib/Arvados/ResourceProxy.pm | 61 ------
sdk/perl/lib/Arvados/ResourceProxyList.pm | 24 ---
sdk/python/setup.py | 7 +-
43 files changed, 735 insertions(+), 995 deletions(-)
delete mode 100644 doc/sdk/perl/example.html.textile.liquid
delete mode 100644 doc/sdk/perl/index.html.textile.liquid
create mode 100644 sdk/cwl/tests/collection_per_tool/collection_per_tool_wrapper.cwl
copy sdk/cwl/tests/wf/{expect_upload_packed.cwl => expect_upload_wrapper.cwl} (69%)
copy sdk/cwl/tests/wf/{expect_upload_packed.cwl => expect_upload_wrapper_altname.cwl} (69%)
delete mode 100644 sdk/perl/.gitignore
delete mode 100644 sdk/perl/Makefile.PL
delete mode 100644 sdk/perl/lib/Arvados.pm
delete mode 100644 sdk/perl/lib/Arvados/Request.pm
delete mode 100644 sdk/perl/lib/Arvados/ResourceAccessor.pm
delete mode 100644 sdk/perl/lib/Arvados/ResourceMethod.pm
delete mode 100644 sdk/perl/lib/Arvados/ResourceProxy.pm
delete mode 100644 sdk/perl/lib/Arvados/ResourceProxyList.pm
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Those revisions listed above that are new to this repository have
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commit 5a33764685ef7fa9578b255e78ad2ed77abc1ded
Merge: 5e3a6c32d d760c01e2
Author: Tom Clegg <tom at curii.com>
Date: Mon Nov 21 09:41:39 2022 -0500
19698: Merge branch 'main' into 19698-masked-error
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at curii.com>
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