[ARVADOS] updated: 2.1.0-2025-gc3577ec1e

[Git user]

Summary of changes:
 .licenseignore                                     |   3 +-
 sdk/cwl/arvados_cwl/arv-cwl-schema-v1.0.yml        |  34 ++++--
 sdk/cwl/arvados_cwl/arv-cwl-schema-v1.1.yml        |  34 ++++--
 sdk/cwl/arvados_cwl/arv-cwl-schema-v1.2.yml        |  34 ++++--
 sdk/cwl/arvados_cwl/arvcontainer.py                |   4 +-
 sdk/cwl/setup.py                                   |   2 +-
 .../DATEST/ChIP-Seq/Raw/fastq/Input_R1.fastq.gz    |   0
 .../DATEST/ChIP-Seq/Raw/fastq/Input_R2.fastq.gz    |   0
 .../DATEST/ChIP-Seq/Raw/fastq/Input_R3.fastq.gz    |   0
 sdk/cwl/tests/chipseq/chip-seq-single.json         |  99 +++++++++++++++
 sdk/cwl/tests/chipseq/cwl-packed.json              |  94 ++++++++++++++
 .../Genomes/Blacklist/lists2/hg38-blacklist.v2.bed |   0
 .../dmel_r6.16/Bowtie2Index/genome.fa              |   0
 .../dmel_r6.16/WholeGenome/genome.fa               |   0
 .../Homo_sapiens/GRCh38.p2/Bowtie2Index/genome.fa  |   0
 .../Homo_sapiens/GRCh38.p2/WholeGenome/genome.fa   |   0
 sdk/cwl/tests/test_container.py                    | 136 ++++++++++++---------
 17 files changed, 352 insertions(+), 88 deletions(-)
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/DATEST/ChIP-Seq/Raw/fastq/Input_R1.fastq.gz (100%)
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/DATEST/ChIP-Seq/Raw/fastq/Input_R2.fastq.gz (100%)
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/DATEST/ChIP-Seq/Raw/fastq/Input_R3.fastq.gz (100%)
 create mode 100644 sdk/cwl/tests/chipseq/chip-seq-single.json
 create mode 100644 sdk/cwl/tests/chipseq/cwl-packed.json
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/data/Genomes/Blacklist/lists2/hg38-blacklist.v2.bed (100%)
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/data/Genomes/Drosophila_melanogaster/dmel_r6.16/Bowtie2Index/genome.fa (100%)
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/data/Genomes/Drosophila_melanogaster/dmel_r6.16/WholeGenome/genome.fa (100%)
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/data/Genomes/Homo_sapiens/GRCh38.p2/Bowtie2Index/genome.fa (100%)
 copy apps/workbench/app/mailers/.gitkeep => sdk/cwl/tests/chipseq/data/Genomes/Homo_sapiens/GRCh38.p2/WholeGenome/genome.fa (100%)

       via  c3577ec1ea5232b92c23118c0606d560a605aed5 (commit)
       via  926c011fb4f7a4d7722b88a19afed51c5d4bd1c4 (commit)
       via  2f61343f1eb92962c938100f980fbeab93525a56 (commit)
      from  a154e1e469ea09fd7a54b79367a811dac673d058 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit c3577ec1ea5232b92c23118c0606d560a605aed5
Merge: a154e1e46 926c011fb
Author: Peter Amstutz <peter.amstutz at curii.com>
Date:   Fri Mar 4 16:44:28 2022 -0500

    Merge branch '18656-dynamic-gpu-req' refs #18656
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>


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