[ARVADOS] created: 2.1.0-1907-g0494b40a0

[Git user]

        at  0494b40a03348e584dbc255d93615a4ef01afaf9 (commit)


commit 0494b40a03348e584dbc255d93615a4ef01afaf9
Author: Peter Amstutz <peter.amstutz at curii.com>
Date:   Thu Feb 10 16:00:16 2022 -0500

    18723: Update cwltool version for scandirs fix
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>

diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 145f1ad7f..7d6d287a2 100644
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -283,9 +283,10 @@ def upload_dependencies(arvrunner, name, document_loader,
     metadata = scanobj
 
     sc_result = scandeps(uri, scanobj,
-                  loadref_fields,
-                  set(("$include", "$schemas", "location")),
-                  loadref, urljoin=document_loader.fetcher.urljoin)
+                         loadref_fields,
+                         set(("$include", "$schemas", "location")),
+                         loadref, urljoin=document_loader.fetcher.urljoin,
+                         nestdirs=False)
 
     sc = []
     uuids = {}
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index f034ca5ab..ae90df43c 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -39,7 +39,7 @@ setup(name='arvados-cwl-runner',
       # file to determine what version of cwltool and schema-salad to
       # build.
       install_requires=[
-          'cwltool==3.1.20211107152837',
+          'cwltool==3.1.20220210171524',
           'schema-salad==8.2.20211116214159',
           'arvados-python-client{}'.format(pysdk_dep),
           'setuptools',

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