[ARVADOS] updated: 2.1.0-2292-gb53513423
Git user
git at public.arvados.org
Tue Apr 12 15:54:49 UTC 2022
Summary of changes:
.licenseignore | 3 +-
AUTHORS | 2 +-
CITATION.cff | 37 +++
.../app/controllers/application_controller.rb | 2 +-
apps/workbench/config/arvados_config.rb | 4 +
build/run-build-packages.sh | 2 +-
build/run-library.sh | 9 +-
build/run-tests.sh | 6 +
cmd/arvados-server/cmd.go | 2 +
.../_container_scheduling_parameters.liquid | 2 +-
doc/admin/spot-instances.html.textile.liquid | 25 +-
doc/admin/upgrading.html.textile.liquid | 48 +++-
doc/api/methods/collections.html.textile.liquid | 30 +++
.../install-dispatch-cloud.html.textile.liquid | 2 +-
doc/sdk/cli/subcommands.html.textile.liquid | 34 ++-
doc/user/cwl/cwl-extensions.html.textile.liquid | 12 +-
lib/boot/supervisor.go | 2 +-
lib/config/config.default.yml | 11 +-
lib/config/export.go | 1 +
lib/config/load.go | 40 ++-
lib/config/load_test.go | 71 +++++-
lib/controller/federation/conn.go | 19 +-
lib/controller/handler_test.go | 16 +-
lib/controller/integration_test.go | 50 ++++
lib/controller/router/router.go | 17 ++
lib/service/cmd.go | 1 +
sdk/R/DESCRIPTION | 2 +-
sdk/cwl/test_with_arvbox.sh | 23 +-
sdk/go/arvados/client.go | 62 ++++-
sdk/go/arvados/client_test.go | 111 ++++++---
sdk/go/arvados/config.go | 1 +
sdk/go/httpserver/logger.go | 23 +-
sdk/python/arvados/arvfile.py | 11 +-
sdk/python/arvados/collection.py | 11 +-
sdk/python/arvados/commands/get.py | 13 +-
sdk/python/arvados/keep.py | 17 +-
sdk/python/arvados/util.py | 5 +-
sdk/python/tests/test_arvfile.py | 3 +-
sdk/python/tests/test_collections.py | 2 +-
sdk/python/tests/test_util.py | 4 +-
.../app/controllers/arvados/v1/links_controller.rb | 55 +++-
.../api/app/models/api_client_authorization.rb | 13 +-
services/api/app/models/arvados_model.rb | 2 +-
.../20220401153101_fix_created_at_indexes.rb | 28 +++
services/api/db/structure.sql | 122 +++++----
services/api/test/fixtures/jobs.yml | 4 +-
services/api/test/fixtures/pipeline_instances.yml | 30 +--
.../api/test/functional/arvados/v1/query_test.rb | 6 +-
services/api/test/integration/permissions_test.rb | 217 +++++++++++++++-
services/api/test/integration/select_test.rb | 2 +-
services/api/test/unit/container_request_test.rb | 3 +-
services/fuse/arvados_fuse/fusedir.py | 12 +-
services/fuse/tests/test_mount.py | 1 +
services/keep-web/handler.go | 8 +
services/keepproxy/.gitignore | 1 -
services/keepproxy/keepproxy.go | 276 +++++----------------
services/keepproxy/keepproxy.service | 25 --
services/keepproxy/keepproxy_test.go | 179 +++++++------
services/keepproxy/proxy_client.go | 2 +-
tools/arvbox/bin/arvbox | 2 +-
.../arvbox/docker/service/keepproxy/run-service | 8 +-
tools/salt-install/Vagrantfile | 14 +-
.../multi_host/aws/pillars/arvados.sls | 22 +-
.../aws/pillars/arvados_development.sls} | 52 ++--
.../aws/states/shell_cron_add_login_sync.sls | 86 +++++++
.../aws/states/shell_sudo_passwordless.sls | 27 ++
.../multiple_hostnames/pillars/arvados.sls | 3 +-
.../single_hostname/pillars/arvados.sls | 4 +-
.../states/shell_cron_add_login_sync.sls | 86 +++++++
.../states/shell_sudo_passwordless.sls | 27 ++
tools/salt-install/provision.sh | 86 ++++---
tools/salt-install/tests/run-test.sh | 8 -
tools/user-activity/arvados_user_activity/main.py | 178 +++++++++----
73 files changed, 1617 insertions(+), 708 deletions(-)
create mode 100644 CITATION.cff
create mode 100644 services/api/db/migrate/20220401153101_fix_created_at_indexes.rb
delete mode 100644 services/keepproxy/.gitignore
delete mode 100644 services/keepproxy/keepproxy.service
copy tools/salt-install/config_examples/{single_host/multiple_hostnames/pillars/arvados.sls => multi_host/aws/pillars/arvados_development.sls} (73%)
create mode 100644 tools/salt-install/config_examples/multi_host/aws/states/shell_cron_add_login_sync.sls
create mode 100644 tools/salt-install/config_examples/multi_host/aws/states/shell_sudo_passwordless.sls
create mode 100644 tools/salt-install/config_examples/single_host/single_hostname/states/shell_cron_add_login_sync.sls
create mode 100644 tools/salt-install/config_examples/single_host/single_hostname/states/shell_sudo_passwordless.sls
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from 13116cc7dc549e93b0757f1948c2ac18b760c681 (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit b53513423ab948804425424278ac554870864997
Merge: 13116cc7d b161916d6
Author: Tom Clegg <tom at curii.com>
Date: Tue Apr 12 11:54:26 2022 -0400
18700: Merge branch 'main'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at curii.com>
diff --cc cmd/arvados-server/cmd.go
index c5465ee56,13b06d679..26c3f485e
--- a/cmd/arvados-server/cmd.go
+++ b/cmd/arvados-server/cmd.go
@@@ -42,9 -39,9 +43,10 @@@ var
"dispatch-lsf": lsf.DispatchCommand,
"install": install.Command,
"init": install.InitCommand,
+ "keepproxy": keepproxy.Command,
"keepstore": keepstore.Command,
"recover-collection": recovercollection.Command,
+ "workbench2": wb2command{},
"ws": ws.Command,
})
)
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