[ARVADOS] updated: 2.2.2-3-ga31420c0b
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git at public.arvados.org
Mon Sep 27 16:30:47 UTC 2021
Summary of changes:
doc/sdk/python/cookbook.html.textile.liquid | 18 ++++++++++++++----
1 file changed, 14 insertions(+), 4 deletions(-)
via a31420c0b77005cbe44f90d312c9091ca7f07fdf (commit)
from 469dc6ad30dae77d490426bf8e5c6709afd17489 (commit)
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commit a31420c0b77005cbe44f90d312c9091ca7f07fdf
Author: Ward Vandewege <ward at curii.com>
Date: Mon Sep 27 12:29:52 2021 -0400
Add an example to the Python cookbook, "Delete a file from an existing
collection".
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward at curii.com>
diff --git a/doc/sdk/python/cookbook.html.textile.liquid b/doc/sdk/python/cookbook.html.textile.liquid
index ff3bcf90e..eda6563d7 100644
--- a/doc/sdk/python/cookbook.html.textile.liquid
+++ b/doc/sdk/python/cookbook.html.textile.liquid
@@ -242,8 +242,8 @@ h2. Copy files from a collection to a new collection
{% codeblock as python %}
import arvados.collection
-source_collection = "x1u39-4zz18-krzg64ufvehgitl"
-target_project = "x1u39-j7d0g-67q94einb8ptznm"
+source_collection = "zzzzz-4zz18-zzzzzzzzzzzzzzz"
+target_project = "zzzzz-j7d0g-zzzzzzzzzzzzzzz"
target_name = "Files copied from source_collection"
files_to_copy = ["folder1/sample1/sample1_R1.fastq",
"folder1/sample2/sample2_R1.fastq"]
@@ -263,8 +263,8 @@ h2. Copy files from a collection to another collection
{% codeblock as python %}
import arvados.collection
-source_collection = "x1u39-4zz18-krzg64ufvehgitl"
-target_collection = "x1u39-4zz18-67q94einb8ptznm"
+source_collection = "zzzzz-4zz18-zzzzzzzzzzzzzzz"
+target_collection = "zzzzz-4zz18-aaaaaaaaaaaaaaa"
files_to_copy = ["folder1/sample1/sample1_R1.fastq",
"folder1/sample2/sample2_R1.fastq"]
@@ -277,6 +277,16 @@ for f in files_to_copy:
target.save()
{% endcodeblock %}
+h2. Delete a file from an existing collection
+
+{% codeblock as python %}
+import arvados
+
+c = arvados.collection.Collection("zzzzz-4zz18-zzzzzzzzzzzzzzz")
+c.remove("file2.txt")
+c.save()
+{% endcodeblock %}
+
h2. Listing records with paging
Use the @arvados.util.keyset_list_all@ helper method to iterate over all the records matching an optional filter. This method handles paging internally and returns results incrementally using a Python iterator. The first parameter of the method takes a @list@ method of an Arvados resource (@collections@, @container_requests@, etc).
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