[ARVADOS] created: 2.1.0-1766-ga84ab4180
Git user
git at public.arvados.org
Wed Dec 29 16:15:23 UTC 2021
at a84ab41802835786e188b11e61f64f0db16d54c1 (commit)
commit a84ab41802835786e188b11e61f64f0db16d54c1
Author: Tom Clegg <tom at curii.com>
Date: Wed Dec 29 11:14:14 2021 -0500
18604: Require go1.17, use go:embed feature for config.default.yml.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at curii.com>
diff --git a/go.mod b/go.mod
index 6933d01e3..73922de91 100644
--- a/go.mod
+++ b/go.mod
@@ -1,76 +1,110 @@
module git.arvados.org/arvados.git
-go 1.13
+go 1.17
require (
github.com/AdRoll/goamz v0.0.0-20170825154802-2731d20f46f4
github.com/Azure/azure-sdk-for-go v45.1.0+incompatible
github.com/Azure/go-autorest/autorest v0.11.22
- github.com/Azure/go-autorest/autorest/adal v0.9.17 // indirect
github.com/Azure/go-autorest/autorest/azure/auth v0.5.9
- github.com/Azure/go-autorest/autorest/azure/cli v0.4.4 // indirect
github.com/Azure/go-autorest/autorest/to v0.4.0
- github.com/Azure/go-autorest/autorest/validation v0.3.0 // indirect
- github.com/alcortesm/tgz v0.0.0-20161220082320-9c5fe88206d7 // indirect
- github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239 // indirect
github.com/arvados/cgofuse v1.2.0-arvados1
github.com/aws/aws-sdk-go v1.25.30
github.com/aws/aws-sdk-go-v2 v0.23.0
github.com/bradleypeabody/godap v0.0.0-20170216002349-c249933bc092
- github.com/containerd/containerd v1.5.8 // indirect
github.com/coreos/go-oidc v2.1.0+incompatible
github.com/coreos/go-systemd v0.0.0-20190321100706-95778dfbb74e
github.com/creack/pty v1.1.7
github.com/docker/docker v17.12.0-ce-rc1.0.20210128214336-420b1d36250f+incompatible
- github.com/docker/go-connections v0.3.0 // indirect
github.com/dustin/go-humanize v1.0.0
- github.com/flynn/go-shlex v0.0.0-20150515145356-3f9db97f8568 // indirect
github.com/fsnotify/fsnotify v1.4.9
github.com/ghodss/yaml v1.0.0
- github.com/gliderlabs/ssh v0.2.2 // indirect
- github.com/go-asn1-ber/asn1-ber v1.4.1 // indirect
github.com/go-ldap/ldap v3.0.3+incompatible
github.com/gogo/protobuf v1.3.2
- github.com/golang-jwt/jwt/v4 v4.1.0 // indirect
github.com/google/shlex v0.0.0-20191202100458-e7afc7fbc510
github.com/gorilla/mux v1.7.2
github.com/hashicorp/golang-lru v0.5.1
github.com/imdario/mergo v0.3.12
- github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99 // indirect
github.com/jmcvetta/randutil v0.0.0-20150817122601-2bb1b664bcff
github.com/jmoiron/sqlx v1.2.0
github.com/johannesboyne/gofakes3 v0.0.0-20200716060623-6b2b4cb092cc
github.com/julienschmidt/httprouter v1.2.0
- github.com/kevinburke/ssh_config v0.0.0-20171013211458-802051befeb5 // indirect
github.com/lib/pq v1.10.2
- github.com/morikuni/aec v1.0.0 // indirect
github.com/msteinert/pam v0.0.0-20190215180659-f29b9f28d6f9
- github.com/pelletier/go-buffruneio v0.2.0 // indirect
- github.com/pquerna/cachecontrol v0.0.0-20180517163645-1555304b9b35 // indirect
github.com/prometheus/client_golang v1.7.1
github.com/prometheus/client_model v0.2.0
github.com/prometheus/common v0.10.0
- github.com/satori/go.uuid v1.2.1-0.20180103174451-36e9d2ebbde5 // indirect
- github.com/sergi/go-diff v1.0.0 // indirect
github.com/sirupsen/logrus v1.8.1
- github.com/src-d/gcfg v1.3.0 // indirect
- github.com/xanzy/ssh-agent v0.1.0 // indirect
golang.org/x/crypto v0.0.0-20211117183948-ae814b36b871
golang.org/x/net v0.0.0-20211112202133-69e39bad7dc2
golang.org/x/oauth2 v0.0.0-20200107190931-bf48bf16ab8d
golang.org/x/sys v0.0.0-20210809222454-d867a43fc93e
- golang.org/x/tools v0.1.7 // indirect
google.golang.org/api v0.20.0
- gopkg.in/asn1-ber.v1 v1.0.0-20181015200546-f715ec2f112d // indirect
gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15
gopkg.in/square/go-jose.v2 v2.5.1
gopkg.in/src-d/go-billy.v4 v4.0.1
- gopkg.in/src-d/go-git-fixtures.v3 v3.5.0 // indirect
gopkg.in/src-d/go-git.v4 v4.0.0
- gopkg.in/warnings.v0 v0.1.2 // indirect
rsc.io/getopt v0.0.0-20170811000552-20be20937449
)
+require (
+ cloud.google.com/go v0.54.0 // indirect
+ github.com/Azure/go-autorest v14.2.0+incompatible // indirect
+ github.com/Azure/go-autorest/autorest/adal v0.9.17 // indirect
+ github.com/Azure/go-autorest/autorest/azure/cli v0.4.4 // indirect
+ github.com/Azure/go-autorest/autorest/date v0.3.0 // indirect
+ github.com/Azure/go-autorest/autorest/validation v0.3.0 // indirect
+ github.com/Azure/go-autorest/logger v0.2.1 // indirect
+ github.com/Azure/go-autorest/tracing v0.6.0 // indirect
+ github.com/Microsoft/go-winio v0.4.17 // indirect
+ github.com/alcortesm/tgz v0.0.0-20161220082320-9c5fe88206d7 // indirect
+ github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239 // indirect
+ github.com/beorn7/perks v1.0.1 // indirect
+ github.com/cespare/xxhash/v2 v2.1.1 // indirect
+ github.com/containerd/containerd v1.5.8 // indirect
+ github.com/dimchansky/utfbom v1.1.1 // indirect
+ github.com/docker/distribution v2.7.1+incompatible // indirect
+ github.com/docker/go-connections v0.3.0 // indirect
+ github.com/docker/go-units v0.4.0 // indirect
+ github.com/gliderlabs/ssh v0.2.2 // indirect
+ github.com/go-asn1-ber/asn1-ber v1.4.1 // indirect
+ github.com/golang-jwt/jwt/v4 v4.1.0 // indirect
+ github.com/golang/groupcache v0.0.0-20200121045136-8c9f03a8e57e // indirect
+ github.com/golang/protobuf v1.5.0 // indirect
+ github.com/googleapis/gax-go/v2 v2.0.5 // indirect
+ github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99 // indirect
+ github.com/jmespath/go-jmespath v0.0.0-20180206201540-c2b33e8439af // indirect
+ github.com/kevinburke/ssh_config v0.0.0-20171013211458-802051befeb5 // indirect
+ github.com/kr/pretty v0.2.1 // indirect
+ github.com/kr/text v0.1.0 // indirect
+ github.com/matttproud/golang_protobuf_extensions v1.0.2-0.20181231171920-c182affec369 // indirect
+ github.com/mitchellh/go-homedir v1.1.0 // indirect
+ github.com/morikuni/aec v1.0.0 // indirect
+ github.com/opencontainers/go-digest v1.0.0 // indirect
+ github.com/opencontainers/image-spec v1.0.1 // indirect
+ github.com/pelletier/go-buffruneio v0.2.0 // indirect
+ github.com/pkg/errors v0.9.1 // indirect
+ github.com/pquerna/cachecontrol v0.0.0-20180517163645-1555304b9b35 // indirect
+ github.com/prometheus/procfs v0.6.0 // indirect
+ github.com/ryszard/goskiplist v0.0.0-20150312221310-2dfbae5fcf46 // indirect
+ github.com/satori/go.uuid v1.2.1-0.20180103174451-36e9d2ebbde5 // indirect
+ github.com/sergi/go-diff v1.0.0 // indirect
+ github.com/shabbyrobe/gocovmerge v0.0.0-20180507124511-f6ea450bfb63 // indirect
+ github.com/src-d/gcfg v1.3.0 // indirect
+ github.com/xanzy/ssh-agent v0.1.0 // indirect
+ go.opencensus.io v0.22.3 // indirect
+ golang.org/x/text v0.3.6 // indirect
+ golang.org/x/tools v0.1.7 // indirect
+ google.golang.org/appengine v1.6.5 // indirect
+ google.golang.org/genproto v0.0.0-20201110150050-8816d57aaa9a // indirect
+ google.golang.org/grpc v1.33.2 // indirect
+ google.golang.org/protobuf v1.27.1 // indirect
+ gopkg.in/asn1-ber.v1 v1.0.0-20181015200546-f715ec2f112d // indirect
+ gopkg.in/src-d/go-git-fixtures.v3 v3.5.0 // indirect
+ gopkg.in/warnings.v0 v0.1.2 // indirect
+ gopkg.in/yaml.v2 v2.4.0 // indirect
+)
+
replace github.com/AdRoll/goamz => github.com/arvados/goamz v0.0.0-20190905141525-1bba09f407ef
replace gopkg.in/yaml.v2 => github.com/arvados/yaml v0.0.0-20210427145106-92a1cab0904b
diff --git a/go.sum b/go.sum
index 1f8fabbfd..fcccf4aa4 100644
--- a/go.sum
+++ b/go.sum
@@ -299,8 +299,6 @@ github.com/envoyproxy/go-control-plane v0.9.4/go.mod h1:6rpuAdCZL397s3pYoYcLgu1m
github.com/envoyproxy/protoc-gen-validate v0.1.0/go.mod h1:iSmxcyjqTsJpI2R4NaDN7+kN2VEUnK/pcBlmesArF7c=
github.com/evanphx/json-patch v4.9.0+incompatible/go.mod h1:50XU6AFN0ol/bzJsmQLiYLvXMP4fmwYFNcr97nuDLSk=
github.com/fatih/color v1.7.0/go.mod h1:Zm6kSWBoL9eyXnKyktHP6abPY2pDugNf5KwzbycvMj4=
-github.com/flynn/go-shlex v0.0.0-20150515145356-3f9db97f8568 h1:BHsljHzVlRcyQhjrss6TZTdY2VfCqZPbv5k3iBFa2ZQ=
-github.com/flynn/go-shlex v0.0.0-20150515145356-3f9db97f8568/go.mod h1:xEzjJPgXI435gkrCt3MPfRiAkVrwSbHsst4LCFVfpJc=
github.com/form3tech-oss/jwt-go v3.2.2+incompatible/go.mod h1:pbq4aXjuKjdthFRnoDwaVPLA+WlJuPGy+QneDUgJi2k=
github.com/frankban/quicktest v1.11.3/go.mod h1:wRf/ReqHper53s+kmmSZizM8NamnL3IM0I9ntUbOk+k=
github.com/fsnotify/fsnotify v1.4.7/go.mod h1:jwhsz4b93w/PPRr/qN1Yymfu8t87LnFCMoQvtojpjFo=
diff --git a/lib/config/generate.go b/lib/config/generate.go
deleted file mode 100644
index e6eeaf8a2..000000000
--- a/lib/config/generate.go
+++ /dev/null
@@ -1,73 +0,0 @@
-// Copyright (C) The Arvados Authors. All rights reserved.
-//
-// SPDX-License-Identifier: AGPL-3.0
-
-//go:build ignore
-// +build ignore
-
-package main
-
-import (
- "bytes"
- "fmt"
- "io/ioutil"
- "log"
- "os"
- "os/exec"
-)
-
-func main() {
- err := generate()
- if err != nil {
- log.Fatal(err)
- }
-}
-
-func generate() error {
- outfn := "generated_config.go"
- tmpfile, err := ioutil.TempFile(".", "."+outfn+".")
- if err != nil {
- return err
- }
- defer os.Remove(tmpfile.Name())
-
- gofmt := exec.Command("gofmt", "-s")
- gofmt.Stdout = tmpfile
- gofmt.Stderr = os.Stderr
- w, err := gofmt.StdinPipe()
- if err != nil {
- return err
- }
- gofmt.Start()
-
- // copyright header: same as this file
- cmd := exec.Command("head", "-n", "4", "generate.go")
- cmd.Stdout = w
- cmd.Stderr = os.Stderr
- err = cmd.Run()
- if err != nil {
- return err
- }
-
- data, err := ioutil.ReadFile("config.default.yml")
- if err != nil {
- return err
- }
- _, err = fmt.Fprintf(w, "package config\nvar DefaultYAML = []byte(`%s`)", bytes.Replace(data, []byte{'`'}, []byte("`+\"`\"+`"), -1))
- if err != nil {
- return err
- }
- err = w.Close()
- if err != nil {
- return err
- }
- err = gofmt.Wait()
- if err != nil {
- return err
- }
- err = tmpfile.Close()
- if err != nil {
- return err
- }
- return os.Rename(tmpfile.Name(), outfn)
-}
diff --git a/lib/config/generated_config.go b/lib/config/generated_config.go
deleted file mode 100644
index f19699347..000000000
--- a/lib/config/generated_config.go
+++ /dev/null
@@ -1,1665 +0,0 @@
-// Copyright (C) The Arvados Authors. All rights reserved.
-//
-// SPDX-License-Identifier: AGPL-3.0
-
-package config
-
-var DefaultYAML = []byte(`# Copyright (C) The Arvados Authors. All rights reserved.
-#
-# SPDX-License-Identifier: AGPL-3.0
-
-# Do not use this file for site configuration. Create
-# /etc/arvados/config.yml instead.
-#
-# The order of precedence (highest to lowest):
-# 1. Legacy component-specific config files (deprecated)
-# 2. /etc/arvados/config.yml
-# 3. config.default.yml
-
-Clusters:
- xxxxx:
- # Token used internally by Arvados components to authenticate to
- # one another. Use a string of at least 50 random alphanumerics.
- SystemRootToken: ""
-
- # Token to be included in all healthcheck requests. Disabled by default.
- # Server expects request header of the format "Authorization: Bearer xxx"
- ManagementToken: ""
-
- Services:
-
- # In each of the service sections below, the keys under
- # InternalURLs are the endpoints where the service should be
- # listening, and reachable from other hosts in the
- # cluster. Example:
- #
- # InternalURLs:
- # "http://host1.example:12345": {}
- # "http://host2.example:12345": {}
-
- RailsAPI:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- Controller:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- Websocket:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- Keepbalance:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- GitHTTP:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- GitSSH:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- DispatchCloud:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- DispatchLSF:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- Keepproxy:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- WebDAV:
- InternalURLs: {SAMPLE: {}}
- # Base URL for Workbench inline preview. If blank, use
- # WebDAVDownload instead, and disable inline preview.
- # If both are empty, downloading collections from workbench
- # will be impossible.
- #
- # It is important to properly configure the download service
- # to migitate cross-site-scripting (XSS) attacks. A HTML page
- # can be stored in collection. If an attacker causes a victim
- # to visit that page through Workbench, it will be rendered by
- # the browser. If all collections are served at the same
- # domain, the browser will consider collections as coming from
- # the same origin and having access to the same browsing data,
- # enabling malicious Javascript on that page to access Arvados
- # on behalf of the victim.
- #
- # This is mitigating by having separate domains for each
- # collection, or limiting preview to circumstances where the
- # collection is not accessed with the user's regular
- # full-access token.
- #
- # Serve preview links using uuid or pdh in subdomain
- # (requires wildcard DNS and TLS certificate)
- # https://*.collections.uuid_prefix.arvadosapi.com
- #
- # Serve preview links using uuid or pdh in main domain
- # (requires wildcard DNS and TLS certificate)
- # https://*--collections.uuid_prefix.arvadosapi.com
- #
- # Serve preview links by setting uuid or pdh in the path.
- # This configuration only allows previews of public data or
- # collection-sharing links, because these use the anonymous
- # user token or the token is already embedded in the URL.
- # Other data must be handled as downloads via WebDAVDownload:
- # https://collections.uuid_prefix.arvadosapi.com
- #
- ExternalURL: ""
-
- WebDAVDownload:
- InternalURLs: {SAMPLE: {}}
- # Base URL for download links. If blank, serve links to WebDAV
- # with disposition=attachment query param. Unlike preview links,
- # browsers do not render attachments, so there is no risk of XSS.
- #
- # If WebDAVDownload is blank, and WebDAV uses a
- # single-origin form, then Workbench will show an error page
- #
- # Serve download links by setting uuid or pdh in the path:
- # https://download.uuid_prefix.arvadosapi.com
- #
- ExternalURL: ""
-
- Keepstore:
- InternalURLs:
- SAMPLE:
- # Rendezvous is normally empty/omitted. When changing the
- # URL of a Keepstore service, Rendezvous should be set to
- # the old URL (with trailing slash omitted) to preserve
- # rendezvous ordering.
- Rendezvous: ""
- ExternalURL: ""
- Composer:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- WebShell:
- InternalURLs: {SAMPLE: {}}
- # ShellInABox service endpoint URL for a given VM. If empty, do not
- # offer web shell logins.
- #
- # E.g., using a path-based proxy server to forward connections to shell hosts:
- # https://webshell.uuid_prefix.arvadosapi.com
- #
- # E.g., using a name-based proxy server to forward connections to shell hosts:
- # https://*.webshell.uuid_prefix.arvadosapi.com
- ExternalURL: ""
- Workbench1:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- Workbench2:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
- Health:
- InternalURLs: {SAMPLE: {}}
- ExternalURL: ""
-
- PostgreSQL:
- # max concurrent connections per arvados server daemon
- ConnectionPool: 32
- Connection:
- # All parameters here are passed to the PG client library in a connection string;
- # see https://www.postgresql.org/docs/current/static/libpq-connect.html#LIBPQ-PARAMKEYWORDS
- host: ""
- port: ""
- user: ""
- password: ""
- dbname: ""
- SAMPLE: ""
- API:
- # Limits for how long a client token created by regular users can be valid,
- # and also is used as a default expiration policy when no expiration date is
- # specified.
- # Default value zero means token expirations don't get clamped and no
- # default expiration is set.
- MaxTokenLifetime: 0s
-
- # Maximum size (in bytes) allowed for a single API request. This
- # limit is published in the discovery document for use by clients.
- # Note: You must separately configure the upstream web server or
- # proxy to actually enforce the desired maximum request size on the
- # server side.
- MaxRequestSize: 134217728
-
- # Limit the number of bytes read from the database during an index
- # request (by retrieving and returning fewer rows than would
- # normally be returned in a single response).
- # Note 1: This setting never reduces the number of returned rows to
- # zero, no matter how big the first data row is.
- # Note 2: Currently, this is only checked against a specific set of
- # columns that tend to get large (collections.manifest_text,
- # containers.mounts, workflows.definition). Other fields (e.g.,
- # "properties" hashes) are not counted against this limit.
- MaxIndexDatabaseRead: 134217728
-
- # Maximum number of items to return when responding to a APIs that
- # can return partial result sets using limit and offset parameters
- # (e.g., *.index, groups.contents). If a request specifies a "limit"
- # parameter higher than this value, this value is used instead.
- MaxItemsPerResponse: 1000
-
- # Maximum number of concurrent requests to accept in a single
- # service process, or 0 for no limit.
- MaxConcurrentRequests: 0
-
- # Maximum number of 64MiB memory buffers per Keepstore server process, or
- # 0 for no limit. When this limit is reached, up to
- # (MaxConcurrentRequests - MaxKeepBlobBuffers) HTTP requests requiring
- # buffers (like GET and PUT) will wait for buffer space to be released.
- # Any HTTP requests beyond MaxConcurrentRequests will receive an
- # immediate 503 response.
- #
- # MaxKeepBlobBuffers should be set such that (MaxKeepBlobBuffers * 64MiB
- # * 1.1) fits comfortably in memory. On a host dedicated to running
- # Keepstore, divide total memory by 88MiB to suggest a suitable value.
- # For example, if grep MemTotal /proc/meminfo reports MemTotal: 7125440
- # kB, compute 7125440 / (88 * 1024)=79 and set MaxKeepBlobBuffers: 79
- MaxKeepBlobBuffers: 128
-
- # API methods to disable. Disabled methods are not listed in the
- # discovery document, and respond 404 to all requests.
- # Example: {"jobs.create":{}, "pipeline_instances.create": {}}
- DisabledAPIs: {}
-
- # Interval (seconds) between asynchronous permission view updates. Any
- # permission-updating API called with the 'async' parameter schedules a an
- # update on the permission view in the future, if not already scheduled.
- AsyncPermissionsUpdateInterval: 20s
-
- # Maximum number of concurrent outgoing requests to make while
- # serving a single incoming multi-cluster (federated) request.
- MaxRequestAmplification: 4
-
- # Maximum wall clock time to spend handling an incoming request.
- RequestTimeout: 5m
-
- # Websocket will send a periodic empty event after 'SendTimeout'
- # if there is no other activity to maintain the connection /
- # detect dropped connections.
- SendTimeout: 60s
-
- WebsocketClientEventQueue: 64
- WebsocketServerEventQueue: 4
-
- # Timeout on requests to internal Keep services.
- KeepServiceRequestTimeout: 15s
-
- # Vocabulary file path, local to the node running the controller.
- # This JSON file should contain the description of what's allowed
- # as object's metadata. Its format is described at:
- # https://doc.arvados.org/admin/metadata-vocabulary.html
- VocabularyPath: ""
-
- Users:
- # Config parameters to automatically setup new users. If enabled,
- # this users will be able to self-activate. Enable this if you want
- # to run an open instance where anyone can create an account and use
- # the system without requiring manual approval.
- #
- # The params AutoSetupNewUsersWith* are meaningful only when AutoSetupNewUsers is turned on.
- # AutoSetupUsernameBlacklist is a list of usernames to be blacklisted for auto setup.
- AutoSetupNewUsers: false
- AutoSetupNewUsersWithVmUUID: ""
- AutoSetupNewUsersWithRepository: false
- AutoSetupUsernameBlacklist:
- arvados: {}
- git: {}
- gitolite: {}
- gitolite-admin: {}
- root: {}
- syslog: {}
- SAMPLE: {}
-
- # When NewUsersAreActive is set to true, new users will be active
- # immediately. This skips the "self-activate" step which enforces
- # user agreements. Should only be enabled for development.
- NewUsersAreActive: false
-
- # Newly activated users (whether set up by an admin or via
- # AutoSetupNewUsers) immediately become visible to other active
- # users.
- #
- # On a multi-tenant cluster, where the intent is for users to be
- # invisible to one another unless they have been added to the
- # same group(s) via Workbench admin interface, change this to
- # false.
- ActivatedUsersAreVisibleToOthers: true
-
- # The e-mail address of the user you would like to become marked as an admin
- # user on their first login.
- AutoAdminUserWithEmail: ""
-
- # If AutoAdminFirstUser is set to true, the first user to log in when no
- # other admin users exist will automatically become an admin user.
- AutoAdminFirstUser: false
-
- # Email address to notify whenever a user creates a profile for the
- # first time
- UserProfileNotificationAddress: ""
- AdminNotifierEmailFrom: arvados at example.com
- EmailSubjectPrefix: "[ARVADOS] "
- UserNotifierEmailFrom: arvados at example.com
- UserNotifierEmailBcc: {}
- NewUserNotificationRecipients: {}
- NewInactiveUserNotificationRecipients: {}
-
- # Set AnonymousUserToken to enable anonymous user access. Populate this
- # field with a long random string. Then run "bundle exec
- # ./script/get_anonymous_user_token.rb" in the directory where your API
- # server is running to record the token in the database.
- AnonymousUserToken: ""
-
- # If a new user has an alternate email address (local at domain)
- # with the domain given here, its local part becomes the new
- # user's default username. Otherwise, the user's primary email
- # address is used.
- PreferDomainForUsername: ""
-
- UserSetupMailText: |
- <% if not @user.full_name.empty? -%>
- <%= @user.full_name %>,
- <% else -%>
- Hi there,
- <% end -%>
-
- Your Arvados account has been set up. You can log in at
-
- <%= Rails.configuration.Services.Workbench1.ExternalURL %>
-
- Thanks,
- Your Arvados administrator.
-
- # If RoleGroupsVisibleToAll is true, all role groups are visible
- # to all active users.
- #
- # If false, users must be granted permission to role groups in
- # order to see them. This is more appropriate for a multi-tenant
- # cluster.
- RoleGroupsVisibleToAll: true
-
- AuditLogs:
- # Time to keep audit logs, in seconds. (An audit log is a row added
- # to the "logs" table in the PostgreSQL database each time an
- # Arvados object is created, modified, or deleted.)
- #
- # Currently, websocket event notifications rely on audit logs, so
- # this should not be set lower than 300 (5 minutes).
- MaxAge: 336h
-
- # Maximum number of log rows to delete in a single SQL transaction.
- #
- # If MaxDeleteBatch is 0, log entries will never be
- # deleted by Arvados. Cleanup can be done by an external process
- # without affecting any Arvados system processes, as long as very
- # recent (<5 minutes old) logs are not deleted.
- #
- # 100000 is a reasonable batch size for most sites.
- MaxDeleteBatch: 0
-
- # Attributes to suppress in events and audit logs. Notably,
- # specifying {"manifest_text": {}} here typically makes the database
- # smaller and faster.
- #
- # Warning: Using any non-empty value here can have undesirable side
- # effects for any client or component that relies on event logs.
- # Use at your own risk.
- UnloggedAttributes: {}
-
- SystemLogs:
-
- # Logging threshold: panic, fatal, error, warn, info, debug, or
- # trace
- LogLevel: info
-
- # Logging format: json or text
- Format: json
-
- # Maximum characters of (JSON-encoded) query parameters to include
- # in each request log entry. When params exceed this size, they will
- # be JSON-encoded, truncated to this size, and logged as
- # params_truncated.
- MaxRequestLogParamsSize: 2000
-
- Collections:
-
- # Enable access controls for data stored in Keep. This should
- # always be set to true on a production cluster.
- BlobSigning: true
-
- # BlobSigningKey is a string of alphanumeric characters used to
- # generate permission signatures for Keep locators. It must be
- # identical to the permission key given to Keep. IMPORTANT: This
- # is a site secret. It should be at least 50 characters.
- #
- # Modifying BlobSigningKey will invalidate all existing
- # signatures, which can cause programs to fail (e.g., arv-put,
- # arv-get, and Crunch jobs). To avoid errors, rotate keys only
- # when no such processes are running.
- BlobSigningKey: ""
-
- # Enable garbage collection of unreferenced blobs in Keep.
- BlobTrash: true
-
- # Time to leave unreferenced blobs in "trashed" state before
- # deleting them, or 0 to skip the "trashed" state entirely and
- # delete unreferenced blobs.
- #
- # If you use any Amazon S3 buckets as storage volumes, this
- # must be at least 24h to avoid occasional data loss.
- BlobTrashLifetime: 336h
-
- # How often to check for (and delete) trashed blocks whose
- # BlobTrashLifetime has expired.
- BlobTrashCheckInterval: 24h
-
- # Maximum number of concurrent "trash blob" and "delete trashed
- # blob" operations conducted by a single keepstore process. Each
- # of these can be set to 0 to disable the respective operation.
- #
- # If BlobTrashLifetime is zero, "trash" and "delete trash"
- # happen at once, so only the lower of these two values is used.
- BlobTrashConcurrency: 4
- BlobDeleteConcurrency: 4
-
- # Maximum number of concurrent "create additional replica of
- # existing blob" operations conducted by a single keepstore
- # process.
- BlobReplicateConcurrency: 4
-
- # Default replication level for collections. This is used when a
- # collection's replication_desired attribute is nil.
- DefaultReplication: 2
-
- # BlobSigningTTL determines the minimum lifetime of transient
- # data, i.e., blocks that are not referenced by
- # collections. Unreferenced blocks exist for two reasons:
- #
- # 1) A data block must be written to a disk/cloud backend device
- # before a collection can be created/updated with a reference to
- # it.
- #
- # 2) Deleting or updating a collection can remove the last
- # remaining reference to a data block.
- #
- # If BlobSigningTTL is too short, long-running
- # processes/containers will fail when they take too long (a)
- # between writing blocks and writing collections that reference
- # them, or (b) between reading collections and reading the
- # referenced blocks.
- #
- # If BlobSigningTTL is too long, data will still be stored long
- # after the referring collections are deleted, and you will
- # needlessly fill up disks or waste money on cloud storage.
- #
- # Modifying BlobSigningTTL invalidates existing signatures; see
- # BlobSigningKey note above.
- #
- # The default is 2 weeks.
- BlobSigningTTL: 336h
-
- # When running keep-balance, this is the destination filename for
- # the list of lost block hashes if there are any, one per line.
- # Updated automically during each successful run.
- BlobMissingReport: ""
-
- # keep-balance operates periodically, i.e.: do a
- # scan/balance operation, sleep, repeat.
- #
- # BalancePeriod determines the interval between start times of
- # successive scan/balance operations. If a scan/balance operation
- # takes longer than BalancePeriod, the next one will follow it
- # immediately.
- #
- # If SIGUSR1 is received during an idle period between operations,
- # the next operation will start immediately.
- BalancePeriod: 10m
-
- # Limits the number of collections retrieved by keep-balance per
- # API transaction. If this is zero, page size is
- # determined by the API server's own page size limits (see
- # API.MaxItemsPerResponse and API.MaxIndexDatabaseRead).
- BalanceCollectionBatch: 0
-
- # The size of keep-balance's internal queue of
- # collections. Higher values use more memory and improve throughput
- # by allowing keep-balance to fetch the next page of collections
- # while the current page is still being processed. If this is zero
- # or omitted, pages are processed serially.
- BalanceCollectionBuffers: 1000
-
- # Maximum time for a rebalancing run. This ensures keep-balance
- # eventually gives up and retries if, for example, a network
- # error causes a hung connection that is never closed by the
- # OS. It should be long enough that it doesn't interrupt a
- # long-running balancing operation.
- BalanceTimeout: 6h
-
- # Maximum number of replication_confirmed /
- # storage_classes_confirmed updates to write to the database
- # after a rebalancing run. When many updates are needed, this
- # spreads them over a few runs rather than applying them all at
- # once.
- BalanceUpdateLimit: 100000
-
- # Default lifetime for ephemeral collections: 2 weeks. This must not
- # be less than BlobSigningTTL.
- DefaultTrashLifetime: 336h
-
- # Interval (seconds) between trash sweeps. During a trash sweep,
- # collections are marked as trash if their trash_at time has
- # arrived, and deleted if their delete_at time has arrived.
- TrashSweepInterval: 60s
-
- # If true, enable collection versioning.
- # When a collection's preserve_version field is true or the current version
- # is older than the amount of seconds defined on PreserveVersionIfIdle,
- # a snapshot of the collection's previous state is created and linked to
- # the current collection.
- CollectionVersioning: true
-
- # 0s = auto-create a new version on every update.
- # -1s = never auto-create new versions.
- # > 0s = auto-create a new version when older than the specified number of seconds.
- PreserveVersionIfIdle: 10s
-
- # If non-empty, allow project and collection names to contain
- # the "/" character (slash/stroke/solidus), and replace "/" with
- # the given string in the filesystem hierarchy presented by
- # WebDAV. Example values are "%2f" and "{slash}". Names that
- # contain the substitution string itself may result in confusing
- # behavior, so a value like "_" is not recommended.
- #
- # If the default empty value is used, the server will reject
- # requests to create or rename a collection when the new name
- # contains "/".
- #
- # If the value "/" is used, project and collection names
- # containing "/" will be allowed, but they will not be
- # accessible via WebDAV.
- #
- # Use of this feature is not recommended, if it can be avoided.
- ForwardSlashNameSubstitution: ""
-
- # Include "folder objects" in S3 ListObjects responses.
- S3FolderObjects: true
-
- # Managed collection properties. At creation time, if the client didn't
- # provide the listed keys, they will be automatically populated following
- # one of the following behaviors:
- #
- # * UUID of the user who owns the containing project.
- # responsible_person_uuid: {Function: original_owner, Protected: true}
- #
- # * Default concrete value.
- # foo_bar: {Value: baz, Protected: false}
- #
- # If Protected is true, only an admin user can modify its value.
- ManagedProperties:
- SAMPLE: {Function: original_owner, Protected: true}
-
- # In "trust all content" mode, Workbench will redirect download
- # requests to WebDAV preview link, even in the cases when
- # WebDAV would have to expose XSS vulnerabilities in order to
- # handle the redirect (see discussion on Services.WebDAV).
- #
- # This setting has no effect in the recommended configuration, where the
- # WebDAV service is configured to have a separate domain for every
- # collection and XSS protection is provided by browsers' same-origin
- # policy.
- #
- # The default setting (false) is appropriate for a multi-user site.
- TrustAllContent: false
-
- # Cache parameters for WebDAV content serving:
- WebDAVCache:
- # Time to cache manifests, permission checks, and sessions.
- TTL: 300s
-
- # Time to cache collection state.
- UUIDTTL: 5s
-
- # Block cache entries. Each block consumes up to 64 MiB RAM.
- MaxBlockEntries: 20
-
- # Collection cache entries.
- MaxCollectionEntries: 1000
-
- # Approximate memory limit (in bytes) for collection cache.
- MaxCollectionBytes: 100000000
-
- # UUID cache entries.
- MaxUUIDEntries: 1000
-
- # Persistent sessions.
- MaxSessions: 100
-
- # Selectively set permissions for regular users and admins to
- # download or upload data files using the upload/download
- # features for Workbench, WebDAV and S3 API support.
- WebDAVPermission:
- User:
- Download: true
- Upload: true
- Admin:
- Download: true
- Upload: true
-
- # Selectively set permissions for regular users and admins to be
- # able to download or upload blocks using arv-put and
- # arv-get from outside the cluster.
- KeepproxyPermission:
- User:
- Download: true
- Upload: true
- Admin:
- Download: true
- Upload: true
-
- # Post upload / download events to the API server logs table, so
- # that they can be included in the arv-user-activity report.
- # You can disable this if you find that it is creating excess
- # load on the API server and you don't need it.
- WebDAVLogEvents: true
-
- Login:
- # One of the following mechanisms (Google, PAM, LDAP, or
- # LoginCluster) should be enabled; see
- # https://doc.arvados.org/install/setup-login.html
-
- Google:
- # Authenticate with Google.
- Enable: false
-
- # Use the Google Cloud console to enable the People API (APIs
- # and Services > Enable APIs and services > Google People API
- # > Enable), generate a Client ID and secret (APIs and
- # Services > Credentials > Create credentials > OAuth client
- # ID > Web application) and add your controller's /login URL
- # (e.g., "https://zzzzz.example.com/login") as an authorized
- # redirect URL.
- ClientID: ""
- ClientSecret: ""
-
- # Allow users to log in to existing accounts using any verified
- # email address listed by their Google account. If true, the
- # Google People API must be enabled in order for Google login to
- # work. If false, only the primary email address will be used.
- AlternateEmailAddresses: true
-
- # Send additional parameters with authentication requests. See
- # https://developers.google.com/identity/protocols/oauth2/openid-connect#authenticationuriparameters
- # for a list of supported parameters.
- AuthenticationRequestParameters:
- # Show the "choose which Google account" page, even if the
- # client is currently logged in to exactly one Google
- # account.
- prompt: select_account
-
- SAMPLE: ""
-
- OpenIDConnect:
- # Authenticate with an OpenID Connect provider.
- Enable: false
-
- # Issuer URL, e.g., "https://login.example.com".
- #
- # This must be exactly equal to the URL returned by the issuer
- # itself in its config response ("isser" key). If the
- # configured value is "https://example" and the provider
- # returns "https://example:443" or "https://example/" then
- # login will fail, even though those URLs are equivalent
- # (RFC3986).
- Issuer: ""
-
- # Your client ID and client secret (supplied by the provider).
- ClientID: ""
- ClientSecret: ""
-
- # OpenID claim field containing the user's email
- # address. Normally "email"; see
- # https://openid.net/specs/openid-connect-core-1_0.html#StandardClaims
- EmailClaim: "email"
-
- # OpenID claim field containing the email verification
- # flag. Normally "email_verified". To accept every returned
- # email address without checking a "verified" field at all,
- # use the empty string "".
- EmailVerifiedClaim: "email_verified"
-
- # OpenID claim field containing the user's preferred
- # username. If empty, use the mailbox part of the user's email
- # address.
- UsernameClaim: ""
-
- # Send additional parameters with authentication requests,
- # like {display: page, prompt: consent}. See
- # https://openid.net/specs/openid-connect-core-1_0.html#AuthRequest
- # and refer to your provider's documentation for supported
- # parameters.
- AuthenticationRequestParameters:
- SAMPLE: ""
-
- # Accept an OIDC access token as an API token if the OIDC
- # provider's UserInfo endpoint accepts it.
- #
- # AcceptAccessTokenScope should also be used when enabling
- # this feature.
- AcceptAccessToken: false
-
- # Before accepting an OIDC access token as an API token, first
- # check that it is a JWT whose "scope" value includes this
- # value. Example: "https://zzzzz.example.com/" (your Arvados
- # API endpoint).
- #
- # If this value is empty and AcceptAccessToken is true, all
- # access tokens will be accepted regardless of scope,
- # including non-JWT tokens. This is not recommended.
- AcceptAccessTokenScope: ""
-
- PAM:
- # Use PAM to authenticate users.
- Enable: false
-
- # PAM service name. PAM will apply the policy in the
- # corresponding config file (e.g., /etc/pam.d/arvados) or, if
- # there is none, the default "other" config.
- Service: arvados
-
- # Domain name (e.g., "example.com") to use to construct the
- # user's email address if PAM authentication returns a
- # username with no "@". If empty, use the PAM username as the
- # user's email address, whether or not it contains "@".
- #
- # Note that the email address is used as the primary key for
- # user records when logging in. Therefore, if you change
- # PAMDefaultEmailDomain after the initial installation, you
- # should also update existing user records to reflect the new
- # domain. Otherwise, next time those users log in, they will
- # be given new accounts instead of accessing their existing
- # accounts.
- DefaultEmailDomain: ""
-
- LDAP:
- # Use an LDAP service to authenticate users.
- Enable: false
-
- # Server URL, like "ldap://ldapserver.example.com:389" or
- # "ldaps://ldapserver.example.com:636".
- URL: "ldap://ldap:389"
-
- # Use StartTLS upon connecting to the server.
- StartTLS: true
-
- # Skip TLS certificate name verification.
- InsecureTLS: false
-
- # Strip the @domain part if a user supplies an email-style
- # username with this domain. If "*", strip any user-provided
- # domain. If "", never strip the domain part. Example:
- # "example.com"
- StripDomain: ""
-
- # If, after applying StripDomain, the username contains no "@"
- # character, append this domain to form an email-style
- # username. Example: "example.com"
- AppendDomain: ""
-
- # The LDAP attribute to filter on when looking up a username
- # (after applying StripDomain and AppendDomain).
- SearchAttribute: uid
-
- # Bind with this username (DN or UPN) and password when
- # looking up the user record.
- #
- # Example user: "cn=admin,dc=example,dc=com"
- SearchBindUser: ""
- SearchBindPassword: ""
-
- # Directory base for username lookup. Example:
- # "ou=Users,dc=example,dc=com"
- SearchBase: ""
-
- # Additional filters to apply when looking up users' LDAP
- # entries. This can be used to restrict access to a subset of
- # LDAP users, or to disambiguate users from other directory
- # entries that have the SearchAttribute present.
- #
- # Special characters in assertion values must be escaped (see
- # RFC4515).
- #
- # Example: "(objectClass=person)"
- SearchFilters: ""
-
- # LDAP attribute to use as the user's email address.
- #
- # Important: This must not be an attribute whose value can be
- # edited in the directory by the users themselves. Otherwise,
- # users can take over other users' Arvados accounts trivially
- # (email address is the primary key for Arvados accounts.)
- EmailAttribute: mail
-
- # LDAP attribute to use as the preferred Arvados username. If
- # no value is found (or this config is empty) the username
- # originally supplied by the user will be used.
- UsernameAttribute: uid
-
- Test:
- # Authenticate users listed here in the config file. This
- # feature is intended to be used in test environments, and
- # should not be used in production.
- Enable: false
- Users:
- SAMPLE:
- Email: alice at example.com
- Password: xyzzy
-
- # The cluster ID to delegate the user database. When set,
- # logins on this cluster will be redirected to the login cluster
- # (login cluster must appear in RemoteClusters with Proxy: true)
- LoginCluster: ""
-
- # How long a cached token belonging to a remote cluster will
- # remain valid before it needs to be revalidated.
- RemoteTokenRefresh: 5m
-
- # How long a client token created from a login flow will be valid without
- # asking the user to re-login. Example values: 60m, 8h.
- # Default value zero means tokens don't have expiration.
- TokenLifetime: 0s
-
- # If true (default) tokens issued through login are allowed to create
- # new tokens.
- # If false, tokens issued through login are not allowed to
- # viewing/creating other tokens. New tokens can only be created
- # by going through login again.
- IssueTrustedTokens: true
-
- # When the token is returned to a client, the token itself may
- # be restricted from viewing/creating other tokens based on whether
- # the client is "trusted" or not. The local Workbench1 and
- # Workbench2 are trusted by default, but if this is a
- # LoginCluster, you probably want to include the other Workbench
- # instances in the federation in this list.
- TrustedClients:
- SAMPLE:
- "https://workbench.federate1.example": {}
- "https://workbench.federate2.example": {}
-
- Git:
- # Path to git or gitolite-shell executable. Each authenticated
- # request will execute this program with the single argument "http-backend"
- GitCommand: /usr/bin/git
-
- # Path to Gitolite's home directory. If a non-empty path is given,
- # the CGI environment will be set up to support the use of
- # gitolite-shell as a GitCommand: for example, if GitoliteHome is
- # "/gh", then the CGI environment will have GITOLITE_HTTP_HOME=/gh,
- # PATH=$PATH:/gh/bin, and GL_BYPASS_ACCESS_CHECKS=1.
- GitoliteHome: ""
-
- # Git repositories must be readable by api server, or you won't be
- # able to submit crunch jobs. To pass the test suites, put a clone
- # of the arvados tree in {git_repositories_dir}/arvados.git or
- # {git_repositories_dir}/arvados/.git
- Repositories: /var/lib/arvados/git/repositories
-
- TLS:
- Certificate: ""
- Key: ""
- Insecure: false
-
- Containers:
- # List of supported Docker Registry image formats that compute nodes
- # are able to use. ` + "`" + `arv keep docker` + "`" + ` will error out if a user tries
- # to store an image with an unsupported format. Use an empty array
- # to skip the compatibility check (and display a warning message to
- # that effect).
- #
- # Example for sites running docker < 1.10: {"v1": {}}
- # Example for sites running docker >= 1.10: {"v2": {}}
- # Example for disabling check: {}
- SupportedDockerImageFormats:
- "v2": {}
- SAMPLE: {}
-
- # Include details about job reuse decisions in the server log. This
- # causes additional database queries to run, so it should not be
- # enabled unless you expect to examine the resulting logs for
- # troubleshooting purposes.
- LogReuseDecisions: false
-
- # Default value for keep_cache_ram of a container's runtime_constraints.
- DefaultKeepCacheRAM: 268435456
-
- # Number of times a container can be unlocked before being
- # automatically cancelled.
- MaxDispatchAttempts: 5
-
- # Default value for container_count_max for container requests. This is the
- # number of times Arvados will create a new container to satisfy a container
- # request. If a container is cancelled it will retry a new container if
- # container_count < container_count_max on any container requests associated
- # with the cancelled container.
- MaxRetryAttempts: 3
-
- # The maximum number of compute nodes that can be in use simultaneously
- # If this limit is reduced, any existing nodes with slot number >= new limit
- # will not be counted against the new limit. In other words, the new limit
- # won't be strictly enforced until those nodes with higher slot numbers
- # go down.
- MaxComputeVMs: 64
-
- # Preemptible instance support (e.g. AWS Spot Instances)
- # When true, child containers will get created with the preemptible
- # scheduling parameter parameter set.
- UsePreemptibleInstances: false
-
- # PEM encoded SSH key (RSA, DSA, or ECDSA) used by the
- # cloud dispatcher for executing containers on worker VMs.
- # Begins with "-----BEGIN RSA PRIVATE KEY-----\n"
- # and ends with "\n-----END RSA PRIVATE KEY-----\n".
- DispatchPrivateKey: ""
-
- # Maximum time to wait for workers to come up before abandoning
- # stale locks from a previous dispatch process.
- StaleLockTimeout: 1m
-
- # The crunch-run command used to start a container on a worker node.
- #
- # When dispatching to cloud VMs, this is used only if
- # DeployRunnerBinary in the CloudVMs section is set to the empty
- # string.
- CrunchRunCommand: "crunch-run"
-
- # Extra arguments to add to crunch-run invocation
- # Example: ["--cgroup-parent-subsystem=memory"]
- CrunchRunArgumentsList: []
-
- # Extra RAM to reserve on the node, in addition to
- # the amount specified in the container's RuntimeConstraints
- ReserveExtraRAM: 256MiB
-
- # Minimum time between two attempts to run the same container
- MinRetryPeriod: 0s
-
- # Container runtime: "docker" (default) or "singularity"
- RuntimeEngine: docker
-
- # When running a container, run a dedicated keepstore process,
- # using the specified number of 64 MiB memory buffers per
- # allocated CPU core (VCPUs in the container's runtime
- # constraints). The dedicated keepstore handles I/O for
- # collections mounted in the container, as well as saving
- # container logs.
- #
- # A zero value disables this feature.
- #
- # In order for this feature to be activated, no volume may use
- # AccessViaHosts, and each volume must have Replication higher
- # than Collections.DefaultReplication. If these requirements are
- # not satisfied, the feature is disabled automatically
- # regardless of the value given here.
- #
- # Note that when this configuration is enabled, the entire
- # cluster configuration file, including the system root token,
- # is copied to the worker node and held in memory for the
- # duration of the container.
- LocalKeepBlobBuffersPerVCPU: 1
-
- # When running a dedicated keepstore process for a container
- # (see LocalKeepBlobBuffersPerVCPU), write keepstore log
- # messages to keepstore.txt in the container's log collection.
- #
- # These log messages can reveal some volume configuration
- # details, error messages from the cloud storage provider, etc.,
- # which are not otherwise visible to users.
- #
- # Accepted values:
- # * "none" -- no keepstore.txt file
- # * "all" -- all logs, including request and response lines
- # * "errors" -- all logs except "response" logs with 2xx
- # response codes and "request" logs
- LocalKeepLogsToContainerLog: none
-
- Logging:
- # When you run the db:delete_old_container_logs task, it will find
- # containers that have been finished for at least this many seconds,
- # and delete their stdout, stderr, arv-mount, crunch-run, and
- # crunchstat logs from the logs table.
- MaxAge: 720h
-
- # These two settings control how frequently log events are flushed to the
- # database. Log lines are buffered until either crunch_log_bytes_per_event
- # has been reached or crunch_log_seconds_between_events has elapsed since
- # the last flush.
- LogBytesPerEvent: 4096
- LogSecondsBetweenEvents: 5s
-
- # The sample period for throttling logs.
- LogThrottlePeriod: 60s
-
- # Maximum number of bytes that job can log over crunch_log_throttle_period
- # before being silenced until the end of the period.
- LogThrottleBytes: 65536
-
- # Maximum number of lines that job can log over crunch_log_throttle_period
- # before being silenced until the end of the period.
- LogThrottleLines: 1024
-
- # Maximum bytes that may be logged by a single job. Log bytes that are
- # silenced by throttling are not counted against this total.
- LimitLogBytesPerJob: 67108864
-
- LogPartialLineThrottlePeriod: 5s
-
- # Container logs are written to Keep and saved in a
- # collection, which is updated periodically while the
- # container runs. This value sets the interval between
- # collection updates.
- LogUpdatePeriod: 30m
-
- # The log collection is also updated when the specified amount of
- # log data (given in bytes) is produced in less than one update
- # period.
- LogUpdateSize: 32MiB
-
- ShellAccess:
- # An admin user can use "arvados-client shell" to start an
- # interactive shell (with any user ID) in any running
- # container.
- Admin: false
-
- # Any user can use "arvados-client shell" to start an
- # interactive shell (with any user ID) in any running
- # container that they started, provided it isn't also
- # associated with a different user's container request.
- #
- # Interactive sessions make it easy to alter the container's
- # runtime environment in ways that aren't recorded or
- # reproducible. Consider the implications for automatic
- # container reuse before enabling and using this feature. In
- # particular, note that starting an interactive session does
- # not disqualify a container from being reused by a different
- # user/workflow in the future.
- User: false
-
- SLURM:
- PrioritySpread: 0
- SbatchArgumentsList: []
- SbatchEnvironmentVariables:
- SAMPLE: ""
- Managed:
- # Path to dns server configuration directory
- # (e.g. /etc/unbound.d/conf.d). If false, do not write any config
- # files or touch restart.txt (see below).
- DNSServerConfDir: ""
-
- # Template file for the dns server host snippets. See
- # unbound.template in this directory for an example. If false, do
- # not write any config files.
- DNSServerConfTemplate: ""
-
- # String to write to {dns_server_conf_dir}/restart.txt (with a
- # trailing newline) after updating local data. If false, do not
- # open or write the restart.txt file.
- DNSServerReloadCommand: ""
-
- # Command to run after each DNS update. Template variables will be
- # substituted; see the "unbound" example below. If false, do not run
- # a command.
- DNSServerUpdateCommand: ""
-
- ComputeNodeDomain: ""
- ComputeNodeNameservers:
- "192.168.1.1": {}
- SAMPLE: {}
-
- # Hostname to assign to a compute node when it sends a "ping" and the
- # hostname in its Node record is nil.
- # During bootstrapping, the "ping" script is expected to notice the
- # hostname given in the ping response, and update its unix hostname
- # accordingly.
- # If false, leave the hostname alone (this is appropriate if your compute
- # nodes' hostnames are already assigned by some other mechanism).
- #
- # One way or another, the hostnames of your node records should agree
- # with your DNS records and your /etc/slurm-llnl/slurm.conf files.
- #
- # Example for compute0000, compute0001, ....:
- # assign_node_hostname: compute%<slot_number>04d
- # (See http://ruby-doc.org/core-2.2.2/Kernel.html#method-i-format for more.)
- AssignNodeHostname: "compute%<slot_number>d"
-
- LSF:
- # Arguments to bsub when submitting Arvados containers as LSF jobs.
- #
- # Template variables starting with % will be substituted as follows:
- #
- # %U uuid
- # %C number of VCPUs
- # %M memory in MB
- # %T tmp in MB
- #
- # Use %% to express a literal %. The %%J in the default will be changed
- # to %J, which is interpreted by bsub itself.
- #
- # Note that the default arguments cause LSF to write two files
- # in /tmp on the compute node each time an Arvados container
- # runs. Ensure you have something in place to delete old files
- # from /tmp, or adjust the "-o" and "-e" arguments accordingly.
- BsubArgumentsList: ["-o", "/tmp/crunch-run.%%J.out", "-e", "/tmp/crunch-run.%%J.err", "-J", "%U", "-n", "%C", "-D", "%MMB", "-R", "rusage[mem=%MMB:tmp=%TMB] span[hosts=1]", "-R", "select[mem>=%MMB]", "-R", "select[tmp>=%TMB]", "-R", "select[ncpus>=%C]"]
-
- # Use sudo to switch to this user account when submitting LSF
- # jobs.
- #
- # This account must exist on the hosts where LSF jobs run
- # ("execution hosts"), as well as on the host where the
- # Arvados LSF dispatcher runs ("submission host").
- BsubSudoUser: "crunch"
-
- JobsAPI:
- # Enable the legacy 'jobs' API (crunch v1). This value must be a string.
- #
- # Note: this only enables read-only access, creating new
- # legacy jobs and pipelines is not supported.
- #
- # 'auto' -- (default) enable the Jobs API only if it has been used before
- # (i.e., there are job records in the database)
- # 'true' -- enable the Jobs API despite lack of existing records.
- # 'false' -- disable the Jobs API despite presence of existing records.
- Enable: 'auto'
-
- # Git repositories must be readable by api server, or you won't be
- # able to submit crunch jobs. To pass the test suites, put a clone
- # of the arvados tree in {git_repositories_dir}/arvados.git or
- # {git_repositories_dir}/arvados/.git
- GitInternalDir: /var/lib/arvados/internal.git
-
- CloudVMs:
- # Enable the cloud scheduler.
- Enable: false
-
- # Name/number of port where workers' SSH services listen.
- SSHPort: "22"
-
- # Interval between queue polls.
- PollInterval: 10s
-
- # Shell command to execute on each worker to determine whether
- # the worker is booted and ready to run containers. It should
- # exit zero if the worker is ready.
- BootProbeCommand: "systemctl is-system-running"
-
- # Minimum interval between consecutive probes to a single
- # worker.
- ProbeInterval: 10s
-
- # Maximum probes per second, across all workers in a pool.
- MaxProbesPerSecond: 10
-
- # Time before repeating SIGTERM when killing a container.
- TimeoutSignal: 5s
-
- # Time to give up on a process (most likely arv-mount) that
- # still holds a container lockfile after its main supervisor
- # process has exited, and declare the instance broken.
- TimeoutStaleRunLock: 5s
-
- # Time to give up on SIGTERM and write off the worker.
- TimeoutTERM: 2m
-
- # Maximum create/destroy-instance operations per second (0 =
- # unlimited).
- MaxCloudOpsPerSecond: 10
-
- # Maximum concurrent instance creation operations (0 = unlimited).
- #
- # MaxConcurrentInstanceCreateOps limits the number of instance creation
- # requests that can be in flight at any one time, whereas
- # MaxCloudOpsPerSecond limits the number of create/destroy operations
- # that can be started per second.
- #
- # Because the API for instance creation on Azure is synchronous, it is
- # recommended to increase MaxConcurrentInstanceCreateOps when running
- # on Azure. When using managed images, a value of 20 would be
- # appropriate. When using Azure Shared Image Galeries, it could be set
- # higher. For more information, see
- # https://docs.microsoft.com/en-us/azure/virtual-machines/linux/capture-image
- #
- # MaxConcurrentInstanceCreateOps can be increased for other cloud
- # providers too, if desired.
- MaxConcurrentInstanceCreateOps: 1
-
- # Interval between cloud provider syncs/updates ("list all
- # instances").
- SyncInterval: 1m
-
- # Time to leave an idle worker running (in case new containers
- # appear in the queue that it can run) before shutting it
- # down.
- TimeoutIdle: 1m
-
- # Time to wait for a new worker to boot (i.e., pass
- # BootProbeCommand) before giving up and shutting it down.
- TimeoutBooting: 10m
-
- # Maximum time a worker can stay alive with no successful
- # probes before being automatically shut down.
- TimeoutProbe: 10m
-
- # Time after shutting down a worker to retry the
- # shutdown/destroy operation.
- TimeoutShutdown: 10s
-
- # Worker VM image ID.
- # (aws) AMI identifier
- # (azure) managed disks: the name of the managed disk image
- # (azure) shared image gallery: the name of the image definition. Also
- # see the SharedImageGalleryName and SharedImageGalleryImageVersion fields.
- # (azure) unmanaged disks (deprecated): the complete URI of the VHD, e.g.
- # https://xxxxx.blob.core.windows.net/system/Microsoft.Compute/Images/images/xxxxx.vhd
- ImageID: ""
-
- # An executable file (located on the dispatcher host) to be
- # copied to cloud instances at runtime and used as the
- # container runner/supervisor. The default value is the
- # dispatcher program itself.
- #
- # Use the empty string to disable this step: nothing will be
- # copied, and cloud instances are assumed to have a suitable
- # version of crunch-run installed; see CrunchRunCommand above.
- DeployRunnerBinary: "/proc/self/exe"
-
- # Tags to add on all resources (VMs, NICs, disks) created by
- # the container dispatcher. (Arvados's own tags --
- # InstanceType, IdleBehavior, and InstanceSecret -- will also
- # be added.)
- ResourceTags:
- SAMPLE: "tag value"
-
- # Prefix for predefined tags used by Arvados (InstanceSetID,
- # InstanceType, InstanceSecret, IdleBehavior). With the
- # default value "Arvados", tags are "ArvadosInstanceSetID",
- # "ArvadosInstanceSecret", etc.
- #
- # This should only be changed while no cloud resources are in
- # use and the cloud dispatcher is not running. Otherwise,
- # VMs/resources that were added using the old tag prefix will
- # need to be detected and cleaned up manually.
- TagKeyPrefix: Arvados
-
- # Cloud driver: "azure" (Microsoft Azure) or "ec2" (Amazon AWS).
- Driver: ec2
-
- # Cloud-specific driver parameters.
- DriverParameters:
-
- # (ec2) Credentials. Omit or leave blank if using IAM role.
- AccessKeyID: ""
- SecretAccessKey: ""
-
- # (ec2) Instance configuration.
- SecurityGroupIDs:
- "SAMPLE": {}
- SubnetID: ""
- Region: ""
- EBSVolumeType: gp2
- AdminUsername: debian
-
- # (azure) Credentials.
- SubscriptionID: ""
- ClientID: ""
- ClientSecret: ""
- TenantID: ""
-
- # (azure) Instance configuration.
- CloudEnvironment: AzurePublicCloud
- Location: centralus
-
- # (azure) The resource group where the VM and virtual NIC will be
- # created.
- ResourceGroup: ""
-
- # (azure) The resource group of the Network to use for the virtual
- # NIC (if different from ResourceGroup)
- NetworkResourceGroup: ""
- Network: ""
- Subnet: ""
-
- # (azure) managed disks: The resource group where the managed disk
- # image can be found (if different from ResourceGroup).
- ImageResourceGroup: ""
-
- # (azure) shared image gallery: the name of the gallery
- SharedImageGalleryName: ""
- # (azure) shared image gallery: the version of the image definition
- SharedImageGalleryImageVersion: ""
-
- # (azure) unmanaged disks (deprecated): Where to store the VM VHD blobs
- StorageAccount: ""
- BlobContainer: ""
-
- # (azure) How long to wait before deleting VHD and NIC
- # objects that are no longer being used.
- DeleteDanglingResourcesAfter: 20s
-
- # Account (that already exists in the VM image) that will be
- # set up with an ssh authorized key to allow the compute
- # dispatcher to connect.
- AdminUsername: arvados
-
- InstanceTypes:
-
- # Use the instance type name as the key (in place of "SAMPLE" in
- # this sample entry).
- SAMPLE:
- # Cloud provider's instance type. Defaults to the configured type name.
- ProviderType: ""
- VCPUs: 1
- RAM: 128MiB
- IncludedScratch: 16GB
- AddedScratch: 0
- Price: 0.1
- Preemptible: false
- # Include this section if the node type includes GPU (CUDA) support
- CUDA:
- DriverVersion: "11.0"
- HardwareCapability: "9.0"
- DeviceCount: 1
-
- StorageClasses:
-
- # If you use multiple storage classes, specify them here, using
- # the storage class name as the key (in place of "SAMPLE" in
- # this sample entry).
- #
- # Further info/examples:
- # https://doc.arvados.org/admin/storage-classes.html
- SAMPLE:
-
- # Priority determines the order volumes should be searched
- # when reading data, in cases where a keepstore server has
- # access to multiple volumes with different storage classes.
- Priority: 0
-
- # Default determines which storage class(es) should be used
- # when a user/client writes data or saves a new collection
- # without specifying storage classes.
- #
- # If any StorageClasses are configured, at least one of them
- # must have Default: true.
- Default: true
-
- Volumes:
- SAMPLE:
- # AccessViaHosts specifies which keepstore processes can read
- # and write data on the volume.
- #
- # For a local filesystem, AccessViaHosts has one entry,
- # indicating which server the filesystem is located on.
- #
- # For a network-attached backend accessible by all keepstore
- # servers, like a cloud storage bucket or an NFS mount,
- # AccessViaHosts can be empty/omitted.
- #
- # Further info/examples:
- # https://doc.arvados.org/install/configure-fs-storage.html
- # https://doc.arvados.org/install/configure-s3-object-storage.html
- # https://doc.arvados.org/install/configure-azure-blob-storage.html
- AccessViaHosts:
- SAMPLE:
- ReadOnly: false
- "http://host1.example:25107": {}
- ReadOnly: false
- Replication: 1
- StorageClasses:
- # If you have configured storage classes (see StorageClasses
- # section above), add an entry here for each storage class
- # satisfied by this volume.
- SAMPLE: true
- Driver: S3
- DriverParameters:
- # for s3 driver -- see
- # https://doc.arvados.org/install/configure-s3-object-storage.html
- IAMRole: aaaaa
- AccessKeyID: aaaaa
- SecretAccessKey: aaaaa
- Endpoint: ""
- Region: us-east-1
- Bucket: aaaaa
- LocationConstraint: false
- V2Signature: false
- IndexPageSize: 1000
- ConnectTimeout: 1m
- ReadTimeout: 10m
- RaceWindow: 24h
- PrefixLength: 0
- # Use aws-s3-go (v2) instead of goamz
- UseAWSS3v2Driver: false
-
- # For S3 driver, potentially unsafe tuning parameter,
- # intentionally excluded from main documentation.
- #
- # Enable deletion (garbage collection) even when the
- # configured BlobTrashLifetime is zero. WARNING: eventual
- # consistency may result in race conditions that can cause
- # data loss. Do not enable this unless you understand and
- # accept the risk.
- UnsafeDelete: false
-
- # for azure driver -- see
- # https://doc.arvados.org/install/configure-azure-blob-storage.html
- StorageAccountName: aaaaa
- StorageAccountKey: aaaaa
- StorageBaseURL: core.windows.net
- ContainerName: aaaaa
- RequestTimeout: 30s
- ListBlobsRetryDelay: 10s
- ListBlobsMaxAttempts: 10
- MaxGetBytes: 0
- WriteRaceInterval: 15s
- WriteRacePollTime: 1s
-
- # for local directory driver -- see
- # https://doc.arvados.org/install/configure-fs-storage.html
- Root: /var/lib/arvados/keep-data
-
- # For local directory driver, potentially confusing tuning
- # parameter, intentionally excluded from main documentation.
- #
- # When true, read and write operations (for whole 64MiB
- # blocks) on an individual volume will queued and issued
- # serially. When false, read and write operations will be
- # issued concurrently.
- #
- # May possibly improve throughput if you have physical spinning disks
- # and experience contention when there are multiple requests
- # to the same volume.
- #
- # Otherwise, when using SSDs, RAID, or a shared network filesystem, you
- # should leave this alone.
- Serialize: false
-
- Mail:
- MailchimpAPIKey: ""
- MailchimpListID: ""
- SendUserSetupNotificationEmail: true
-
- # Bug/issue report notification to and from addresses
- IssueReporterEmailFrom: "arvados at example.com"
- IssueReporterEmailTo: "arvados at example.com"
- SupportEmailAddress: "arvados at example.com"
-
- # Generic issue email from
- EmailFrom: "arvados at example.com"
- RemoteClusters:
- "*":
- Host: ""
- Proxy: false
- Scheme: https
- Insecure: false
- ActivateUsers: false
- SAMPLE:
- # API endpoint host or host:port; default is {id}.arvadosapi.com
- Host: sample.arvadosapi.com
-
- # Perform a proxy request when a local client requests an
- # object belonging to this remote.
- Proxy: false
-
- # Default "https". Can be set to "http" for testing.
- Scheme: https
-
- # Disable TLS verify. Can be set to true for testing.
- Insecure: false
-
- # When users present tokens issued by this remote cluster, and
- # their accounts are active on the remote cluster, activate
- # them on this cluster too.
- ActivateUsers: false
-
- Workbench:
- # Workbench1 configs
- Theme: default
- ActivationContactLink: mailto:info at arvados.org
- ArvadosDocsite: https://doc.arvados.org
- ArvadosPublicDataDocURL: https://playground.arvados.org/projects/public
- ShowUserAgreementInline: false
- SecretKeyBase: ""
-
- # Scratch directory used by the remote repository browsing
- # feature. If it doesn't exist, it (and any missing parents) will be
- # created using mkdir_p.
- RepositoryCache: /var/www/arvados-workbench/current/tmp/git
-
- # Below is a sample setting of user_profile_form_fields config parameter.
- # This configuration parameter should be set to either false (to disable) or
- # to a map as shown below.
- # Configure the map of input fields to be displayed in the profile page
- # using the attribute "key" for each of the input fields.
- # This sample shows configuration with one required and one optional form fields.
- # For each of these input fields:
- # You can specify "Type" as "text" or "select".
- # List the "Options" to be displayed for each of the "select" menu.
- # Set "Required" as "true" for any of these fields to make them required.
- # If any of the required fields are missing in the user's profile, the user will be
- # redirected to the profile page before they can access any Workbench features.
- UserProfileFormFields:
- SAMPLE:
- Type: select
- FormFieldTitle: Best color
- FormFieldDescription: your favorite color
- Required: false
- Position: 1
- Options:
- red: {}
- blue: {}
- green: {}
- SAMPLE: {}
-
- # exampleTextValue: # key that will be set in properties
- # Type: text #
- # FormFieldTitle: ""
- # FormFieldDescription: ""
- # Required: true
- # Position: 1
- # exampleOptionsValue:
- # Type: select
- # FormFieldTitle: ""
- # FormFieldDescription: ""
- # Required: true
- # Position: 1
- # Options:
- # red: {}
- # blue: {}
- # yellow: {}
-
- # Use "UserProfileFormMessage to configure the message you want
- # to display on the profile page.
- UserProfileFormMessage: 'Welcome to Arvados. All <span style="color:red">required fields</span> must be completed before you can proceed.'
-
- # Mimetypes of applications for which the view icon
- # would be enabled in a collection's show page.
- # It is sufficient to list only applications here.
- # No need to list text and image types.
- ApplicationMimetypesWithViewIcon:
- cwl: {}
- fasta: {}
- go: {}
- javascript: {}
- json: {}
- pdf: {}
- python: {}
- x-python: {}
- r: {}
- rtf: {}
- sam: {}
- x-sh: {}
- vnd.realvnc.bed: {}
- xml: {}
- xsl: {}
- SAMPLE: {}
-
- # The maximum number of bytes to load in the log viewer
- LogViewerMaxBytes: 1M
-
- # When anonymous_user_token is configured, show public projects page
- EnablePublicProjectsPage: true
-
- # By default, disable the "Getting Started" popup which is specific to Arvados playground
- EnableGettingStartedPopup: false
-
- # Ask Arvados API server to compress its response payloads.
- APIResponseCompression: true
-
- # Timeouts for API requests.
- APIClientConnectTimeout: 2m
- APIClientReceiveTimeout: 5m
-
- # Maximum number of historic log records of a running job to fetch
- # and display in the Log tab, while subscribing to web sockets.
- RunningJobLogRecordsToFetch: 2000
-
- # In systems with many shared projects, loading of dashboard and topnav
- # can be slow due to collections indexing; use the following parameters
- # to suppress these properties
- ShowRecentCollectionsOnDashboard: true
- ShowUserNotifications: true
-
- # Enable/disable "multi-site search" in top nav ("true"/"false"), or
- # a link to the multi-site search page on a "home" Workbench site.
- #
- # Example:
- # https://workbench.zzzzz.arvadosapi.com/collections/multisite
- MultiSiteSearch: ""
-
- # Should workbench allow management of local git repositories? Set to false if
- # the jobs api is disabled and there are no local git repositories.
- Repositories: true
-
- SiteName: Arvados Workbench
- ProfilingEnabled: false
-
- # This is related to obsolete Google OpenID 1.0 login
- # but some workbench stuff still expects it to be set.
- DefaultOpenIdPrefix: "https://www.google.com/accounts/o8/id"
-
- # Workbench2 configs
- FileViewersConfigURL: ""
-
- # Idle time after which the user's session will be auto closed.
- # This feature is disabled when set to zero.
- IdleTimeout: 0s
-
- # Workbench welcome screen, this is HTML text that will be
- # incorporated directly onto the page.
- WelcomePageHTML: |
- <img src="/arvados-logo-big.png" style="width: 20%; float: right; padding: 1em;" />
- <h2>Please log in.</h2>
-
- <p>If you have never used Arvados Workbench before, logging in
- for the first time will automatically create a new
- account.</p>
-
- <i>Arvados Workbench uses your information only for
- identification, and does not retrieve any other personal
- information.</i>
-
- # Workbench screen displayed to inactive users. This is HTML
- # text that will be incorporated directly onto the page.
- InactivePageHTML: |
- <img src="/arvados-logo-big.png" style="width: 20%; float: right; padding: 1em;" />
- <h3>Hi! You're logged in, but...</h3>
- <p>Your account is inactive.</p>
- <p>An administrator must activate your account before you can get
- any further.</p>
-
- # Connecting to Arvados shell VMs tends to be site-specific.
- # Put any special instructions here. This is HTML text that will
- # be incorporated directly onto the Workbench page.
- SSHHelpPageHTML: |
- <a href="https://doc.arvados.org/user/getting_started/ssh-access-unix.html">Accessing an Arvados VM with SSH</a> (generic instructions).
- Site configurations vary. Contact your local cluster administrator if you have difficulty accessing an Arvados shell node.
-
- # Sample text if you are using a "switchyard" ssh proxy.
- # Replace "zzzzz" with your Cluster ID.
- #SSHHelpPageHTML: |
- # <p>Add a section like this to your SSH configuration file ( <i>~/.ssh/config</i>):</p>
- # <pre>Host *.zzzzz
- # TCPKeepAlive yes
- # ServerAliveInterval 60
- # ProxyCommand ssh -p2222 turnout at switchyard.zzzzz.arvadosapi.com -x -a $SSH_PROXY_FLAGS %h
- # </pre>
-
- # If you are using a switchyard ssh proxy, shell node hostnames
- # may require a special hostname suffix. In the sample ssh
- # configuration above, this would be ".zzzzz"
- # This is added to the hostname in the "command line" column
- # the Workbench "shell VMs" page.
- #
- # If your shell nodes are directly accessible by users without a
- # proxy and have fully qualified host names, you should leave
- # this blank.
- SSHHelpHostSuffix: ""
-
-# (Experimental) Restart services automatically when config file
-# changes are detected. Only supported by ` + "`" + `arvados-server boot` + "`" + ` in
-# dev/test mode.
-AutoReloadConfig: false
-`)
diff --git a/lib/config/load.go b/lib/config/load.go
index 888cc828a..b4a34335b 100644
--- a/lib/config/load.go
+++ b/lib/config/load.go
@@ -6,6 +6,7 @@ package config
import (
"bytes"
+ _ "embed"
"encoding/json"
"errors"
"flag"
@@ -23,6 +24,9 @@ import (
"github.com/sirupsen/logrus"
)
+//go:embed config.default.yml
+var DefaultYAML []byte
+
var ErrNoClustersDefined = errors.New("config does not define any clusters")
type Loader struct {
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