[ARVADOS] updated: 2.1.0-1716-gdde7a01a8
Git user
git at public.arvados.org
Fri Dec 10 16:35:12 UTC 2021
Summary of changes:
doc/_config.yml | 1 +
.../collection-versioning.html.textile.liquid | 4 +-
doc/admin/config-urls.html.textile.liquid | 274 +++++++++++++++++++++
doc/admin/keep-recovering-data.html.textile.liquid | 2 +-
doc/admin/metrics.html.textile.liquid | 1 +
doc/admin/upgrading.html.textile.liquid | 4 +
...configure-s3-object-storage.html.textile.liquid | 2 +-
...nstall-manual-prerequisites.html.textile.liquid | 11 +-
doc/install/install-postgresql.html.textile.liquid | 7 +-
go.mod | 15 +-
go.sum | 57 +++--
lib/config/config.default.yml | 8 +-
lib/config/generated_config.go | 8 +-
lib/controller/dblock/dblock.go | 14 +-
lib/controller/federation.go | 7 +-
lib/controller/federation/conn.go | 27 ++
lib/controller/federation_test.go | 2 +-
lib/controller/handler.go | 2 +
lib/controller/handler_test.go | 25 +-
lib/controller/integration_test.go | 54 +++-
lib/controller/localdb/container_gateway_test.go | 3 +-
lib/controller/localdb/login.go | 4 +-
lib/controller/localdb/login_oidc.go | 9 +-
lib/controller/router/response.go | 9 +
lib/controller/router/router.go | 42 ++++
lib/controller/rpc/conn.go | 30 +++
lib/crunchrun/crunchrun.go | 2 +-
lib/lsf/dispatch.go | 44 +++-
lib/lsf/dispatch_test.go | 94 ++++++-
lib/lsf/lsfcli.go | 32 +--
lib/lsf/lsfqueue.go | 10 +-
sdk/go/arvados/api.go | 10 +
sdk/go/arvados/api_client_authorization.go | 22 +-
sdk/go/arvadostest/api.go | 20 ++
.../java/org/arvados/client/api/model/Group.java | 2 +-
.../java/org/arvados/client/api/model/Link.java | 24 +-
.../client/api/client/LinkApiClientTest.java | 97 ++++++++
.../arvados/client/api/client/links-create.json | 18 ++
.../org/arvados/client/api/client/links-get.json | 18 ++
.../org/arvados/client/api/client/links-list.json | 46 ++++
sdk/python/arvados/commands/put.py | 3 +
sdk/python/tests/test_arv_put.py | 23 +-
services/api/lib/update_permissions.rb | 14 +-
services/keep-balance/balance.go | 54 ++--
services/keep-balance/balance_run_test.go | 26 ++
services/keep-balance/balance_test.go | 27 +-
services/keepstore/count.go | 26 ++
services/keepstore/handlers.go | 4 +-
services/keepstore/s3aws_volume.go | 99 +++-----
services/keepstore/unix_volume.go | 34 +--
50 files changed, 1132 insertions(+), 239 deletions(-)
create mode 100644 doc/admin/config-urls.html.textile.liquid
create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/LinkApiClientTest.java
create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/links-create.json
create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/links-get.json
create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/links-list.json
discards 24ccf7a58d10a2a3b77a1ef6f808c1ad422e8b35 (commit)
discards 458dae934c14435c0c86b90321ac8000498cab23 (commit)
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via da7b5d99516353f6408e5a9bf640374cf3126e2e (commit)
via 17a3d6e7fbc8941ad67b3b6cf344ff369ddd6e66 (commit)
via c6b9122dbed5a301b5084992df695a1182141479 (commit)
via 2a1062755c5a83e765963c8dbfd223ebd61530cc (commit)
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commit dde7a01a8dba17936f6100de09a0203aaf9225b8
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Fri Dec 10 11:34:44 2021 -0500
12630: Update to docker client 19.03.15 for GPU support
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
diff --git a/go.mod b/go.mod
index 0ea3dd916..6933d01e3 100644
--- a/go.mod
+++ b/go.mod
@@ -11,22 +11,18 @@ require (
github.com/Azure/go-autorest/autorest/azure/cli v0.4.4 // indirect
github.com/Azure/go-autorest/autorest/to v0.4.0
github.com/Azure/go-autorest/autorest/validation v0.3.0 // indirect
- github.com/Microsoft/go-winio v0.4.5 // indirect
github.com/alcortesm/tgz v0.0.0-20161220082320-9c5fe88206d7 // indirect
github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239 // indirect
github.com/arvados/cgofuse v1.2.0-arvados1
github.com/aws/aws-sdk-go v1.25.30
github.com/aws/aws-sdk-go-v2 v0.23.0
- github.com/bgentry/speakeasy v0.1.0 // indirect
github.com/bradleypeabody/godap v0.0.0-20170216002349-c249933bc092
+ github.com/containerd/containerd v1.5.8 // indirect
github.com/coreos/go-oidc v2.1.0+incompatible
- github.com/coreos/go-systemd v0.0.0-20180108085132-cc4f39464dc7
+ github.com/coreos/go-systemd v0.0.0-20190321100706-95778dfbb74e
github.com/creack/pty v1.1.7
- github.com/dnaeon/go-vcr v1.0.1 // indirect
- github.com/docker/distribution v2.6.0-rc.1.0.20180105232752-277ed486c948+incompatible // indirect
- github.com/docker/docker v1.4.2-0.20180109013817-94b8a116fbf1
+ github.com/docker/docker v17.12.0-ce-rc1.0.20210128214336-420b1d36250f+incompatible
github.com/docker/go-connections v0.3.0 // indirect
- github.com/docker/go-units v0.3.3-0.20171221200356-d59758554a3d // indirect
github.com/dustin/go-humanize v1.0.0
github.com/flynn/go-shlex v0.0.0-20150515145356-3f9db97f8568 // indirect
github.com/fsnotify/fsnotify v1.4.9
@@ -34,13 +30,12 @@ require (
github.com/gliderlabs/ssh v0.2.2 // indirect
github.com/go-asn1-ber/asn1-ber v1.4.1 // indirect
github.com/go-ldap/ldap v3.0.3+incompatible
- github.com/gogo/protobuf v1.1.1
+ github.com/gogo/protobuf v1.3.2
github.com/golang-jwt/jwt/v4 v4.1.0 // indirect
github.com/google/shlex v0.0.0-20191202100458-e7afc7fbc510
- github.com/gorilla/context v1.1.1 // indirect
- github.com/gorilla/mux v1.6.1-0.20180107155708-5bbbb5b2b572
+ github.com/gorilla/mux v1.7.2
github.com/hashicorp/golang-lru v0.5.1
- github.com/imdario/mergo v0.3.8-0.20190415133143-5ef87b449ca7
+ github.com/imdario/mergo v0.3.12
github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99 // indirect
github.com/jmcvetta/randutil v0.0.0-20150817122601-2bb1b664bcff
github.com/jmoiron/sqlx v1.2.0
@@ -48,14 +43,13 @@ require (
github.com/julienschmidt/httprouter v1.2.0
github.com/kevinburke/ssh_config v0.0.0-20171013211458-802051befeb5 // indirect
github.com/lib/pq v1.10.2
+ github.com/morikuni/aec v1.0.0 // indirect
github.com/msteinert/pam v0.0.0-20190215180659-f29b9f28d6f9
- github.com/opencontainers/go-digest v1.0.0-rc1 // indirect
- github.com/opencontainers/image-spec v1.0.1-0.20171125024018-577479e4dc27 // indirect
github.com/pelletier/go-buffruneio v0.2.0 // indirect
github.com/pquerna/cachecontrol v0.0.0-20180517163645-1555304b9b35 // indirect
- github.com/prometheus/client_golang v1.2.1
- github.com/prometheus/client_model v0.0.0-20190812154241-14fe0d1b01d4
- github.com/prometheus/common v0.7.0
+ github.com/prometheus/client_golang v1.7.1
+ github.com/prometheus/client_model v0.2.0
+ github.com/prometheus/common v0.10.0
github.com/satori/go.uuid v1.2.1-0.20180103174451-36e9d2ebbde5 // indirect
github.com/sergi/go-diff v1.0.0 // indirect
github.com/sirupsen/logrus v1.8.1
@@ -63,18 +57,17 @@ require (
github.com/xanzy/ssh-agent v0.1.0 // indirect
golang.org/x/crypto v0.0.0-20211117183948-ae814b36b871
golang.org/x/net v0.0.0-20211112202133-69e39bad7dc2
- golang.org/x/oauth2 v0.0.0-20190604053449-0f29369cfe45
+ golang.org/x/oauth2 v0.0.0-20200107190931-bf48bf16ab8d
golang.org/x/sys v0.0.0-20210809222454-d867a43fc93e
golang.org/x/tools v0.1.7 // indirect
- google.golang.org/api v0.13.0
+ google.golang.org/api v0.20.0
gopkg.in/asn1-ber.v1 v1.0.0-20181015200546-f715ec2f112d // indirect
- gopkg.in/check.v1 v1.0.0-20161208181325-20d25e280405
- gopkg.in/square/go-jose.v2 v2.3.1
+ gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15
+ gopkg.in/square/go-jose.v2 v2.5.1
gopkg.in/src-d/go-billy.v4 v4.0.1
gopkg.in/src-d/go-git-fixtures.v3 v3.5.0 // indirect
gopkg.in/src-d/go-git.v4 v4.0.0
gopkg.in/warnings.v0 v0.1.2 // indirect
- gopkg.in/yaml.v2 v2.2.4 // indirect
rsc.io/getopt v0.0.0-20170811000552-20be20937449
)
diff --git a/go.sum b/go.sum
index 28ff3dadc..1f8fabbfd 100644
--- a/go.sum
+++ b/go.sum
@@ -1,14 +1,41 @@
+bazil.org/fuse v0.0.0-20160811212531-371fbbdaa898/go.mod h1:Xbm+BRKSBEpa4q4hTSxohYNQpsxXPbPry4JJWOB3LB8=
cloud.google.com/go v0.26.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw=
cloud.google.com/go v0.34.0/go.mod h1:aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw=
-cloud.google.com/go v0.38.0 h1:ROfEUZz+Gh5pa62DJWXSaonyu3StP6EA6lPEXPI6mCo=
cloud.google.com/go v0.38.0/go.mod h1:990N+gfupTy94rShfmMCWGDn0LpTmnzTp2qbd1dvSRU=
+cloud.google.com/go v0.44.1/go.mod h1:iSa0KzasP4Uvy3f1mN/7PiObzGgflwredwwASm/v6AU=
+cloud.google.com/go v0.44.2/go.mod h1:60680Gw3Yr4ikxnPRS/oxxkBccT6SA1yMk63TGekxKY=
+cloud.google.com/go v0.45.1/go.mod h1:RpBamKRgapWJb87xiFSdk4g1CME7QZg3uwTez+TSTjc=
+cloud.google.com/go v0.46.3/go.mod h1:a6bKKbmY7er1mI7TEI4lsAkts/mkhTSZK8w33B4RAg0=
+cloud.google.com/go v0.50.0/go.mod h1:r9sluTvynVuxRIOHXQEHMFffphuXHOMZMycpNR5e6To=
+cloud.google.com/go v0.52.0/go.mod h1:pXajvRH/6o3+F9jDHZWQ5PbGhn+o8w9qiu/CffaVdO4=
+cloud.google.com/go v0.53.0/go.mod h1:fp/UouUEsRkN6ryDKNW/Upv/JBKnv6WDthjR6+vze6M=
+cloud.google.com/go v0.54.0 h1:3ithwDMr7/3vpAMXiH+ZQnYbuIsh+OPhUPMFC9enmn0=
+cloud.google.com/go v0.54.0/go.mod h1:1rq2OEkV3YMf6n/9ZvGWI3GWw0VoqH/1x2nd8Is/bPc=
+cloud.google.com/go/bigquery v1.0.1/go.mod h1:i/xbL2UlR5RvWAURpBYZTtm/cXjCha9lbfbpx4poX+o=
+cloud.google.com/go/bigquery v1.3.0/go.mod h1:PjpwJnslEMmckchkHFfq+HTD2DmtT67aNFKH1/VBDHE=
+cloud.google.com/go/bigquery v1.4.0/go.mod h1:S8dzgnTigyfTmLBfrtrhyYhwRxG72rYxvftPBK2Dvzc=
+cloud.google.com/go/datastore v1.0.0/go.mod h1:LXYbyblFSglQ5pkeyhO+Qmw7ukd3C+pD7TKLgZqpHYE=
+cloud.google.com/go/datastore v1.1.0/go.mod h1:umbIZjpQpHh4hmRpGhH4tLFup+FVzqBi1b3c64qFpCk=
+cloud.google.com/go/pubsub v1.0.1/go.mod h1:R0Gpsv3s54REJCy4fxDixWD93lHJMoZTyQ2kNxGRt3I=
+cloud.google.com/go/pubsub v1.1.0/go.mod h1:EwwdRX2sKPjnvnqCa270oGRyludottCI76h+R3AArQw=
+cloud.google.com/go/pubsub v1.2.0/go.mod h1:jhfEVHT8odbXTkndysNHCcx0awwzvfOlguIAii9o8iA=
+cloud.google.com/go/storage v1.0.0/go.mod h1:IhtSnM/ZTZV8YYJWCY8RULGVqBDmpoyjwiyrjsg+URw=
+cloud.google.com/go/storage v1.5.0/go.mod h1:tpKbwo567HUNpVclU5sGELwQWBDZ8gh0ZeosJ0Rtdos=
+cloud.google.com/go/storage v1.6.0/go.mod h1:N7U0C8pVQ/+NIKOBQyamJIeKQKkZ+mxpohlUTyfDhBk=
+dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU=
+github.com/Azure/azure-sdk-for-go v16.2.1+incompatible/go.mod h1:9XXNKU+eRnpl9moKnB4QOLf1HestfXbmab5FXxiDBjc=
github.com/Azure/azure-sdk-for-go v45.1.0+incompatible h1:kxtaPD8n2z5Za+9e3sKsYG2IX6PG2R6VXtgS7gAbh3A=
github.com/Azure/azure-sdk-for-go v45.1.0+incompatible/go.mod h1:9XXNKU+eRnpl9moKnB4QOLf1HestfXbmab5FXxiDBjc=
+github.com/Azure/go-ansiterm v0.0.0-20170929234023-d6e3b3328b78 h1:w+iIsaOQNcT7OZ575w+acHgRric5iCyQh+xv+KJ4HB8=
+github.com/Azure/go-ansiterm v0.0.0-20170929234023-d6e3b3328b78/go.mod h1:LmzpDX56iTiv29bbRTIsUNlaFfuhWRQBWjQdVyAevI8=
+github.com/Azure/go-autorest v10.8.1+incompatible/go.mod h1:r+4oMnoxhatjLLJ6zxSWATqVooLgysK6ZNox3g/xq24=
github.com/Azure/go-autorest v14.2.0+incompatible h1:V5VMDjClD3GiElqLWO7mz2MxNAK/vTfRHdAubSIPRgs=
github.com/Azure/go-autorest v14.2.0+incompatible/go.mod h1:r+4oMnoxhatjLLJ6zxSWATqVooLgysK6ZNox3g/xq24=
+github.com/Azure/go-autorest/autorest v0.11.1/go.mod h1:JFgpikqFJ/MleTTxwepExTKnFUKKszPS8UavbQYUMuw=
github.com/Azure/go-autorest/autorest v0.11.19/go.mod h1:dSiJPy22c3u0OtOKDNttNgqpNFY/GeWa7GH/Pz56QRA=
github.com/Azure/go-autorest/autorest v0.11.22 h1:bXiQwDjrRmBQOE67bwlvUKAC1EU1yZTPQ38c+bstZws=
github.com/Azure/go-autorest/autorest v0.11.22/go.mod h1:BAWYUWGPEtKPzjVkp0Q6an0MJcJDsoh5Z1BFAEFs4Xs=
+github.com/Azure/go-autorest/autorest/adal v0.9.0/go.mod h1:/c022QCutn2P7uY+/oQWWNcK9YU+MH96NgK+jErpbcg=
github.com/Azure/go-autorest/autorest/adal v0.9.5/go.mod h1:B7KF7jKIeC9Mct5spmyCB/A8CG/sEz1vwIRGv/bbw7A=
github.com/Azure/go-autorest/autorest/adal v0.9.13/go.mod h1:W/MM4U6nLxnIskrw4UwWzlHfGjwUS50aOsc/I3yuU8M=
github.com/Azure/go-autorest/autorest/adal v0.9.14/go.mod h1:W/MM4U6nLxnIskrw4UwWzlHfGjwUS50aOsc/I3yuU8M=
@@ -21,292 +48,895 @@ github.com/Azure/go-autorest/autorest/azure/cli v0.4.4 h1:iuooz5cZL6VRcO7DVSFYxR
github.com/Azure/go-autorest/autorest/azure/cli v0.4.4/go.mod h1:yAQ2b6eP/CmLPnmLvxtT1ALIY3OR1oFcCqVBi8vHiTc=
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commit f04d5211ed026a4e0cbdca77dad447700eb88772
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Wed Nov 24 15:26:46 2021 -0500
12630: Remove distinction between cubin/PTX hardware capabilities
Fix misspelled "HardwareCapability"
Add cuda_ fields runtime_constraints documentation.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
diff --git a/doc/_includes/_container_runtime_constraints.liquid b/doc/_includes/_container_runtime_constraints.liquid
index 7e0c8f18f..dcdc29cf3 100644
--- a/doc/_includes/_container_runtime_constraints.liquid
+++ b/doc/_includes/_container_runtime_constraints.liquid
@@ -14,3 +14,6 @@ table(table table-bordered table-condensed).
|vcpus|integer|Number of cores to be used to run this process.|Optional. However, a ContainerRequest that is in "Committed" state must provide this.|
|keep_cache_ram|integer|Number of keep cache bytes to be used to run this process.|Optional.|
|API|boolean|When set, ARVADOS_API_HOST and ARVADOS_API_TOKEN will be set, and container will have networking enabled to access the Arvados API server.|Optional.|
+|cuda_driver_version|string|Minimum CUDA driver version.|Optional.|
+|cuda_hardware_capability|string|Minimum CUDA hardware capability.|Optional.|
+|cuda_device_count|int|Number of GPUs to request.|Optional.|
diff --git a/lib/crunchrun/crunchrun.go b/lib/crunchrun/crunchrun.go
index 589a046a3..7e68dcd33 100644
--- a/lib/crunchrun/crunchrun.go
+++ b/lib/crunchrun/crunchrun.go
@@ -986,6 +986,18 @@ func (runner *ContainerRunner) CreateContainer(imageID string, bindmounts map[st
runner.executorStdin = stdin
runner.executorStdout = stdout
runner.executorStderr = stderr
+
+ cudaDeviceCount := 0
+ if runner.Container.RuntimeConstraints.CUDADriverVersion != "" ||
+ runner.Container.RuntimeConstraints.CUDAHardwareCapability != "" ||
+ runner.Container.RuntimeConstraints.CUDADeviceCount != 0 {
+ // if any of these are set, enable CUDA GPU support
+ cudaDeviceCount = runner.Container.RuntimeConstraints.CUDADeviceCount
+ if cudaDeviceCount == 0 {
+ cudaDeviceCount = 1
+ }
+ }
+
return runner.executor.Create(containerSpec{
Image: imageID,
VCPUs: runner.Container.RuntimeConstraints.VCPUs,
@@ -995,7 +1007,7 @@ func (runner *ContainerRunner) CreateContainer(imageID string, bindmounts map[st
BindMounts: bindmounts,
Command: runner.Container.Command,
EnableNetwork: enableNetwork,
- CUDADeviceCount: runner.Container.RuntimeConstraints.CUDADeviceCount,
+ CUDADeviceCount: cudaDeviceCount,
NetworkMode: runner.networkMode,
CgroupParent: runner.setCgroupParent,
Stdin: stdin,
diff --git a/sdk/go/arvados/container.go b/sdk/go/arvados/container.go
index 8e335f875..27afc1a3a 100644
--- a/sdk/go/arvados/container.go
+++ b/sdk/go/arvados/container.go
@@ -96,14 +96,13 @@ type Mount struct {
// RuntimeConstraints specify a container's compute resources (RAM,
// CPU) and network connectivity.
type RuntimeConstraints struct {
- API bool `json:"API"`
- RAM int64 `json:"ram"`
- VCPUs int `json:"vcpus"`
- KeepCacheRAM int64 `json:"keep_cache_ram"`
- CUDADriverVersion string `json:"cuda_driver_version,omitempty"`
- CUDACubinHardwareCapability []string `json:"cuda_cubin_hardware_capability,omitempty"`
- CUDAPTXHardwardCapability string `json:"cuda_ptx_hardware_capability,omitempty"`
- CUDADeviceCount int `json:"cuda_device_count,omitempty"`
+ API bool `json:"API"`
+ RAM int64 `json:"ram"`
+ VCPUs int `json:"vcpus"`
+ KeepCacheRAM int64 `json:"keep_cache_ram"`
+ CUDADriverVersion string `json:"cuda_driver_version,omitempty"`
+ CUDAHardwareCapability string `json:"cuda_hardware_capability,omitempty"`
+ CUDADeviceCount int `json:"cuda_device_count,omitempty"`
}
// SchedulingParameters specify a container's scheduling parameters
commit 7be9cb0ae8aeb5a49d5450aa38ff9f652761c2d3
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Mon Nov 22 13:35:20 2021 -0500
12630: Use CUDADeviceCount instead of EnableCUDA
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
diff --git a/lib/crunchrun/crunchrun.go b/lib/crunchrun/crunchrun.go
index dd0169025..589a046a3 100644
--- a/lib/crunchrun/crunchrun.go
+++ b/lib/crunchrun/crunchrun.go
@@ -987,19 +987,20 @@ func (runner *ContainerRunner) CreateContainer(imageID string, bindmounts map[st
runner.executorStdout = stdout
runner.executorStderr = stderr
return runner.executor.Create(containerSpec{
- Image: imageID,
- VCPUs: runner.Container.RuntimeConstraints.VCPUs,
- RAM: ram,
- WorkingDir: workdir,
- Env: env,
- BindMounts: bindmounts,
- Command: runner.Container.Command,
- EnableNetwork: enableNetwork,
- NetworkMode: runner.networkMode,
- CgroupParent: runner.setCgroupParent,
- Stdin: stdin,
- Stdout: stdout,
- Stderr: stderr,
+ Image: imageID,
+ VCPUs: runner.Container.RuntimeConstraints.VCPUs,
+ RAM: ram,
+ WorkingDir: workdir,
+ Env: env,
+ BindMounts: bindmounts,
+ Command: runner.Container.Command,
+ EnableNetwork: enableNetwork,
+ CUDADeviceCount: runner.Container.RuntimeConstraints.CUDADeviceCount,
+ NetworkMode: runner.networkMode,
+ CgroupParent: runner.setCgroupParent,
+ Stdin: stdin,
+ Stdout: stdout,
+ Stderr: stderr,
})
}
diff --git a/lib/crunchrun/docker.go b/lib/crunchrun/docker.go
index 573df7faf..c64ff83da 100644
--- a/lib/crunchrun/docker.go
+++ b/lib/crunchrun/docker.go
@@ -106,10 +106,10 @@ func (e *dockerExecutor) Create(spec containerSpec) error {
KernelMemory: spec.RAM, // kernel portion
},
}
- if spec.EnableCUDA {
+ if spec.CUDADeviceCount != 0 {
hostCfg.Resources.DeviceRequests = append(hostCfg.Resources.DeviceRequests, dockercontainer.DeviceRequest{
Driver: "nvidia",
- Count: -1,
+ Count: spec.CUDADeviceCount,
Capabilities: [][]string{[]string{"gpu", "nvidia", "compute"}},
})
}
diff --git a/lib/crunchrun/executor.go b/lib/crunchrun/executor.go
index bffd701bc..dc1bc20b7 100644
--- a/lib/crunchrun/executor.go
+++ b/lib/crunchrun/executor.go
@@ -16,20 +16,20 @@ type bindmount struct {
}
type containerSpec struct {
- Image string
- VCPUs int
- RAM int64
- WorkingDir string
- Env map[string]string
- BindMounts map[string]bindmount
- Command []string
- EnableNetwork bool
- EnableCUDA bool
- NetworkMode string // docker network mode, normally "default"
- CgroupParent string
- Stdin io.Reader
- Stdout io.Writer
- Stderr io.Writer
+ Image string
+ VCPUs int
+ RAM int64
+ WorkingDir string
+ Env map[string]string
+ BindMounts map[string]bindmount
+ Command []string
+ EnableNetwork bool
+ CUDADeviceCount int
+ NetworkMode string // docker network mode, normally "default"
+ CgroupParent string
+ Stdin io.Reader
+ Stdout io.Writer
+ Stderr io.Writer
}
// containerExecutor is an interface to a container runtime
diff --git a/lib/crunchrun/singularity.go b/lib/crunchrun/singularity.go
index 5637a9b4d..2128aeb22 100644
--- a/lib/crunchrun/singularity.go
+++ b/lib/crunchrun/singularity.go
@@ -247,7 +247,7 @@ func (e *singularityExecutor) Start() error {
args = append(args, "--net", "--network=none")
}
- if e.spec.EnableCUDA {
+ if e.spec.CUDADeviceCount != 0 {
args = append(args, "--nv")
}
diff --git a/sdk/go/arvados/container.go b/sdk/go/arvados/container.go
index 014fd6c2b..8e335f875 100644
--- a/sdk/go/arvados/container.go
+++ b/sdk/go/arvados/container.go
@@ -100,10 +100,10 @@ type RuntimeConstraints struct {
RAM int64 `json:"ram"`
VCPUs int `json:"vcpus"`
KeepCacheRAM int64 `json:"keep_cache_ram"`
- CUDADriverVersion string `json:"cuda_driver_version"`
- CUDACubinHardwareCapability []string `json:"cuda_cubin_hardware_capability"`
- CUDAPTXHardwardCapability string `json:"cuda_ptx_hardware_capability"`
- CUDADeviceCount int `json:"cuda_device_count"`
+ CUDADriverVersion string `json:"cuda_driver_version,omitempty"`
+ CUDACubinHardwareCapability []string `json:"cuda_cubin_hardware_capability,omitempty"`
+ CUDAPTXHardwardCapability string `json:"cuda_ptx_hardware_capability,omitempty"`
+ CUDADeviceCount int `json:"cuda_device_count,omitempty"`
}
// SchedulingParameters specify a container's scheduling parameters
commit da7b5d99516353f6408e5a9bf640374cf3126e2e
Author: Peter Amstutz <peter.amstutz at curii.com>
Date: Mon Nov 22 12:47:03 2021 -0500
12630: first try at adding GPU support, no tests yet
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz at curii.com>
diff --git a/lib/crunchrun/docker.go b/lib/crunchrun/docker.go
index 07f79bbcc..573df7faf 100644
--- a/lib/crunchrun/docker.go
+++ b/lib/crunchrun/docker.go
@@ -106,6 +106,13 @@ func (e *dockerExecutor) Create(spec containerSpec) error {
KernelMemory: spec.RAM, // kernel portion
},
}
+ if spec.EnableCUDA {
+ hostCfg.Resources.DeviceRequests = append(hostCfg.Resources.DeviceRequests, dockercontainer.DeviceRequest{
+ Driver: "nvidia",
+ Count: -1,
+ Capabilities: [][]string{[]string{"gpu", "nvidia", "compute"}},
+ })
+ }
for path, mount := range spec.BindMounts {
bind := mount.HostPath + ":" + path
if mount.ReadOnly {
diff --git a/lib/crunchrun/executor.go b/lib/crunchrun/executor.go
index b7c341f31..bffd701bc 100644
--- a/lib/crunchrun/executor.go
+++ b/lib/crunchrun/executor.go
@@ -24,6 +24,7 @@ type containerSpec struct {
BindMounts map[string]bindmount
Command []string
EnableNetwork bool
+ EnableCUDA bool
NetworkMode string // docker network mode, normally "default"
CgroupParent string
Stdin io.Reader
diff --git a/lib/crunchrun/singularity.go b/lib/crunchrun/singularity.go
index 5af023a83..5637a9b4d 100644
--- a/lib/crunchrun/singularity.go
+++ b/lib/crunchrun/singularity.go
@@ -246,6 +246,11 @@ func (e *singularityExecutor) Start() error {
if !e.spec.EnableNetwork {
args = append(args, "--net", "--network=none")
}
+
+ if e.spec.EnableCUDA {
+ args = append(args, "--nv")
+ }
+
readonlyflag := map[bool]string{
false: "rw",
true: "ro",
diff --git a/sdk/go/arvados/container.go b/sdk/go/arvados/container.go
index 7c68bdb20..014fd6c2b 100644
--- a/sdk/go/arvados/container.go
+++ b/sdk/go/arvados/container.go
@@ -96,10 +96,14 @@ type Mount struct {
// RuntimeConstraints specify a container's compute resources (RAM,
// CPU) and network connectivity.
type RuntimeConstraints struct {
- API bool `json:"API"`
- RAM int64 `json:"ram"`
- VCPUs int `json:"vcpus"`
- KeepCacheRAM int64 `json:"keep_cache_ram"`
+ API bool `json:"API"`
+ RAM int64 `json:"ram"`
+ VCPUs int `json:"vcpus"`
+ KeepCacheRAM int64 `json:"keep_cache_ram"`
+ CUDADriverVersion string `json:"cuda_driver_version"`
+ CUDACubinHardwareCapability []string `json:"cuda_cubin_hardware_capability"`
+ CUDAPTXHardwardCapability string `json:"cuda_ptx_hardware_capability"`
+ CUDADeviceCount int `json:"cuda_device_count"`
}
// SchedulingParameters specify a container's scheduling parameters
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