[ARVADOS] updated: 1.3.0-3233-gbcb16d182
Git user
git at public.arvados.org
Mon Sep 28 15:59:19 UTC 2020
Summary of changes:
.../app/controllers/application_controller.rb | 2 +-
.../app/controllers/projects_controller.rb | 2 +-
.../app/views/work_units/_show_component.html.erb | 8 +-
build/run-tests.sh | 4 +-
doc/_includes/_install_ruby_and_bundler.liquid | 10 +-
doc/admin/upgrading.html.textile.liquid | 11 +-
doc/admin/user-management-cli.html.textile.liquid | 46 +
doc/api/methods/links.html.textile.liquid | 22 +-
.../tutorials/wgs-tutorial.html.textile.liquid | 6 +-
lib/cloud/cloudtest/tester.go | 9 +-
lib/cloud/ec2/ec2.go | 3 +-
lib/config/config.default.yml | 14 +
lib/config/export.go | 1 +
lib/config/generated_config.go | 14 +
lib/controller/federation/conn.go | 3 +-
lib/controller/localdb/login_oidc.go | 56 +-
lib/crunchrun/crunchrun_test.go | 14 +-
lib/crunchrun/logging.go | 3 +-
lib/dispatchcloud/dispatcher.go | 4 +-
lib/dispatchcloud/dispatcher_test.go | 4 +
.../{ssh_executor => sshexecutor}/executor.go | 4 +-
.../{ssh_executor => sshexecutor}/executor_test.go | 2 +-
lib/dispatchcloud/worker/pool.go | 12 +-
lib/dispatchcloud/worker/worker.go | 5 +-
lib/dispatchcloud/worker/worker_test.go | 2 +
lib/install/deps.go | 5 +
sdk/R/DESCRIPTION | 6 +-
sdk/R/R/Arvados.R | 4821 +++++++-------------
sdk/R/R/ArvadosFile.R | 2 -
sdk/R/R/Collection.R | 5 -
sdk/R/R/CollectionTree.R | 4 -
sdk/R/R/HttpParser.R | 5 +-
sdk/R/R/HttpRequest.R | 4 +-
sdk/R/R/RESTService.R | 15 +-
sdk/R/R/Subcollection.R | 2 -
sdk/R/R/autoGenAPI.R | 12 +-
sdk/R/README.Rmd | 2 +-
sdk/R/tests/testthat/test-ArvadosFile.R | 12 +-
sdk/R/tests/testthat/test-Collection.R | 22 +-
sdk/R/tests/testthat/test-CollectionTree.R | 22 +-
sdk/R/tests/testthat/test-HttpParser.R | 8 +-
sdk/R/tests/testthat/test-HttpRequest.R | 14 +-
sdk/R/tests/testthat/test-RESTService.R | 54 +-
sdk/R/tests/testthat/test-Subcollection.R | 28 +-
sdk/cwl/arvados_cwl/__init__.py | 4 +
sdk/cwl/arvados_cwl/arvcontainer.py | 5 +-
sdk/cwl/arvados_cwl/executor.py | 2 +
sdk/cwl/tests/test_submit.py | 33 +-
sdk/dev-jobs.dockerfile | 6 +-
sdk/go/arvados/config.go | 1 +
sdk/go/arvados/fs_base.go | 3 +-
sdk/go/arvados/fs_collection.go | 20 +-
sdk/go/auth/salt.go | 3 +-
sdk/go/health/handler_test.go | 3 +-
sdk/go/httpserver/logger.go | 3 +-
sdk/go/keepclient/keepclient.go | 5 +-
sdk/python/arvados/commands/run.py | 2 +-
.../arvados/v1/collections_controller.rb | 13 +-
.../app/controllers/arvados/v1/users_controller.rb | 2 +-
services/api/app/models/arvados_model.rb | 7 +-
services/api/app/models/database_seeds.rb | 21 +-
.../views/user_notifier/account_is_setup.text.erb | 15 +-
.../20200914203202_public_favorites_project.rb | 23 +
services/api/db/structure.sql | 3 +-
services/api/lib/current_api_client.rb | 33 +
services/api/test/fixtures/groups.yml | 7 +
services/api/test/fixtures/links.yml | 14 +
services/api/test/fixtures/logs.yml | 17 +-
.../arvados/v1/collections_controller_test.rb | 10 +
.../functional/arvados/v1/users_controller_test.rb | 17 +
services/api/test/unit/log_test.rb | 35 +-
services/api/test/unit/permission_test.rb | 20 +
services/api/test/unit/user_notifier_test.rb | 18 +
services/crunch-dispatch-slurm/squeue.go | 15 +-
services/keep-web/s3.go | 3 +
services/keep-web/s3_test.go | 16 +
services/keepstore/pull_worker.go | 7 +-
services/keepstore/s3aws_volume.go | 7 +-
78 files changed, 2139 insertions(+), 3558 deletions(-)
rename lib/dispatchcloud/{ssh_executor => sshexecutor}/executor.go (98%)
rename lib/dispatchcloud/{ssh_executor => sshexecutor}/executor_test.go (99%)
create mode 100644 services/api/db/migrate/20200914203202_public_favorites_project.rb
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Those revisions listed above that are new to this repository have
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commit bcb16d1825fd2e3105a51a2a2f9a119d71f33c8d
Merge: a463a62cd ac82dcc51
Author: Ward Vandewege <ward at curii.com>
Date: Mon Sep 28 11:58:54 2020 -0400
16267: Merge branch 'master' into 16267-change-arvbox-deps
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward at curii.com>
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