[ARVADOS] updated: 1.3.0-3180-gc3944344c
Git user
git at public.arvados.org
Sat Sep 19 13:24:51 UTC 2020
Summary of changes:
discards 0561135cc4649a40c42ed8bf623c7afb0a0b3db3 (commit)
via c3944344c170a2b1014347cce3ea5388f2b8b79c (commit)
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commit c3944344c170a2b1014347cce3ea5388f2b8b79c
Author: Ward Vandewege <ward at curii.com>
Date: Fri Sep 18 17:06:41 2020 -0400
16831: arvbox: bugfix: fix bundler version issue in documentation.
Upgrade images to Debian Buster. Clean up whitespace in the
arvbox command.
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward at curii.com>
diff --git a/tools/arvbox/bin/arvbox b/tools/arvbox/bin/arvbox
index 279d46c08..122e2bec7 100755
--- a/tools/arvbox/bin/arvbox
+++ b/tools/arvbox/bin/arvbox
@@ -107,11 +107,11 @@ wait_for_arvbox() {
while read line ; do
if [[ $line =~ "ok: down: ready:" ]] ; then
kill $LOGPID
- set +e
- wait $LOGPID 2>/dev/null
- set -e
- else
- echo $line
+ set +e
+ wait $LOGPID 2>/dev/null
+ set -e
+ else
+ echo $line
fi
done < $FF
rm $FF
@@ -125,7 +125,7 @@ wait_for_arvbox() {
docker_run_dev() {
docker run \
- "--volume=$ARVADOS_ROOT:/usr/src/arvados:rw" \
+ "--volume=$ARVADOS_ROOT:/usr/src/arvados:rw" \
"--volume=$COMPOSER_ROOT:/usr/src/composer:rw" \
"--volume=$WORKBENCH2_ROOT:/usr/src/workbench2:rw" \
"--volume=$PG_DATA:/var/lib/postgresql:rw" \
@@ -136,8 +136,8 @@ docker_run_dev() {
"--volume=$NPMCACHE:/var/lib/npm:rw" \
"--volume=$GOSTUFF:/var/lib/gopath:rw" \
"--volume=$RLIBS:/var/lib/Rlibs:rw" \
- --label "org.arvados.arvbox_config=$CONFIG" \
- "$@"
+ --label "org.arvados.arvbox_config=$CONFIG" \
+ "$@"
}
running_config() {
@@ -153,10 +153,10 @@ run() {
need_setup=1
if docker ps -a --filter "status=running" | grep -E "$ARVBOX_CONTAINER$" -q ; then
- if [[ $(running_config) != "$CONFIG" ]] ; then
- echo "Container $ARVBOX_CONTAINER is '$(running_config)' config but requested '$CONFIG'; use restart or reboot"
- return 1
- fi
+ if [[ $(running_config) != "$CONFIG" ]] ; then
+ echo "Container $ARVBOX_CONTAINER is '$(running_config)' config but requested '$CONFIG'; use restart or reboot"
+ return 1
+ fi
if test "$CONFIG" = test -o "$CONFIG" = devenv ; then
need_setup=0
else
@@ -175,12 +175,12 @@ run() {
if test -n "$TAG"
then
if test $(echo $TAG | cut -c1-1) != '-' ; then
- TAG=":$TAG"
+ TAG=":$TAG"
shift
else
- if [[ $TAG = '-' ]] ; then
- shift
- fi
+ if [[ $TAG = '-' ]] ; then
+ shift
+ fi
unset TAG
fi
fi
@@ -192,7 +192,7 @@ run() {
defaultdev=$(/sbin/ip route|awk '/default/ { print $5 }')
localip=$(ip addr show $defaultdev | grep 'inet ' | sed 's/ *inet \(.*\)\/.*/\1/')
fi
- echo "Public arvbox will use address $localip"
+ echo "Public arvbox will use address $localip"
iptemp=$(mktemp)
echo $localip > $iptemp
chmod og+r $iptemp
@@ -207,7 +207,7 @@ run() {
--publish=8001:8001
--publish=8002:8002
--publish=4202:4202
- --publish=45000-45020:45000-45020"
+ --publish=45000-45020:45000-45020"
else
PUBLIC=""
fi
@@ -228,7 +228,7 @@ run() {
--name=$ARVBOX_CONTAINER \
--privileged \
--volumes-from $ARVBOX_CONTAINER-data \
- --label "org.arvados.arvbox_config=$CONFIG" \
+ --label "org.arvados.arvbox_config=$CONFIG" \
$PUBLIC \
arvados/arvbox-demo$TAG
updateconf
@@ -257,7 +257,7 @@ run() {
--detach \
--name=$ARVBOX_CONTAINER \
--privileged \
- "--env=SVDIR=/etc/test-service" \
+ "--env=SVDIR=/etc/test-service" \
arvados/arvbox-dev$TAG
docker exec -ti \
@@ -271,10 +271,10 @@ run() {
/var/lib/arvbox/service/api/run-service --only-setup
fi
- interactive=""
- if [[ -z "$@" ]] ; then
- interactive=--interactive
- fi
+ interactive=""
+ if [[ -z "$@" ]] ; then
+ interactive=--interactive
+ fi
docker exec -ti \
-e LINES=$(tput lines) \
@@ -282,32 +282,32 @@ run() {
-e TERM=$TERM \
-e WORKSPACE=/usr/src/arvados \
-e GEM_HOME=/var/lib/gems \
- -e CONFIGSRC=/var/lib/arvados/run_tests \
+ -e CONFIGSRC=/var/lib/arvados/run_tests \
$ARVBOX_CONTAINER \
/usr/local/lib/arvbox/runsu.sh \
/usr/src/arvados/build/run-tests.sh \
--temp /var/lib/arvados/test \
- $interactive \
+ $interactive \
"$@"
elif [[ "$CONFIG" = devenv ]] ; then
- if [[ $need_setup = 1 ]] ; then
- docker_run_dev \
+ if [[ $need_setup = 1 ]] ; then
+ docker_run_dev \
--detach \
- --name=${ARVBOX_CONTAINER} \
- "--env=SVDIR=/etc/devenv-service" \
- "--volume=$HOME:$HOME:rw" \
- --volume=/tmp/.X11-unix:/tmp/.X11-unix:rw \
- arvados/arvbox-dev$TAG
- fi
- exec docker exec --interactive --tty \
- -e LINES=$(tput lines) \
- -e COLUMNS=$(tput cols) \
- -e TERM=$TERM \
- -e "ARVBOX_HOME=$HOME" \
- -e "DISPLAY=$DISPLAY" \
- --workdir=$PWD \
- ${ARVBOX_CONTAINER} \
- /usr/local/lib/arvbox/devenv.sh "$@"
+ --name=${ARVBOX_CONTAINER} \
+ "--env=SVDIR=/etc/devenv-service" \
+ "--volume=$HOME:$HOME:rw" \
+ --volume=/tmp/.X11-unix:/tmp/.X11-unix:rw \
+ arvados/arvbox-dev$TAG
+ fi
+ exec docker exec --interactive --tty \
+ -e LINES=$(tput lines) \
+ -e COLUMNS=$(tput cols) \
+ -e TERM=$TERM \
+ -e "ARVBOX_HOME=$HOME" \
+ -e "DISPLAY=$DISPLAY" \
+ --workdir=$PWD \
+ ${ARVBOX_CONTAINER} \
+ /usr/local/lib/arvbox/devenv.sh "$@"
elif [[ "$CONFIG" =~ dev$ ]] ; then
docker_run_dev \
--detach \
@@ -318,12 +318,12 @@ run() {
updateconf
wait_for_arvbox
echo "The Arvados source code is checked out at: $ARVADOS_ROOT"
- echo "The Arvados testing root certificate is $VAR_DATA/root-cert.pem"
- if [[ "$(listusers)" =~ ^\{\} ]] ; then
- echo "No users defined, use 'arvbox adduser' to add user logins"
- else
- echo "Use 'arvbox listusers' to see user logins"
- fi
+ echo "The Arvados testing root certificate is $VAR_DATA/root-cert.pem"
+ if [[ "$(listusers)" =~ ^\{\} ]] ; then
+ echo "No users defined, use 'arvbox adduser' to add user logins"
+ else
+ echo "Use 'arvbox listusers' to see user logins"
+ fi
else
echo "Unknown configuration '$CONFIG'"
fi
@@ -337,7 +337,7 @@ update() {
if test -n "$TAG"
then
if test $(echo $TAG | cut -c1-1) != '-' ; then
- TAG=":$TAG"
+ TAG=":$TAG"
shift
else
unset TAG
@@ -345,9 +345,9 @@ update() {
fi
if echo "$CONFIG" | grep 'demo$' ; then
- docker pull arvados/arvbox-demo$TAG
+ docker pull arvados/arvbox-demo$TAG
else
- docker pull arvados/arvbox-dev$TAG
+ docker pull arvados/arvbox-dev$TAG
fi
}
@@ -421,22 +421,22 @@ case "$subcmd" in
sh*)
exec docker exec --interactive --tty \
- -e LINES=$(tput lines) \
- -e COLUMNS=$(tput cols) \
- -e TERM=$TERM \
- -e GEM_HOME=/var/lib/gems \
- $ARVBOX_CONTAINER /bin/bash
+ -e LINES=$(tput lines) \
+ -e COLUMNS=$(tput cols) \
+ -e TERM=$TERM \
+ -e GEM_HOME=/var/lib/gems \
+ $ARVBOX_CONTAINER /bin/bash
;;
ash*)
exec docker exec --interactive --tty \
- -e LINES=$(tput lines) \
- -e COLUMNS=$(tput cols) \
- -e TERM=$TERM \
- -e GEM_HOME=/var/lib/gems \
- -u arvbox \
- -w /usr/src/arvados \
- $ARVBOX_CONTAINER /bin/bash --login
+ -e LINES=$(tput lines) \
+ -e COLUMNS=$(tput cols) \
+ -e TERM=$TERM \
+ -e GEM_HOME=/var/lib/gems \
+ -u arvbox \
+ -w /usr/src/arvados \
+ $ARVBOX_CONTAINER /bin/bash --login
;;
pipe)
@@ -463,7 +463,7 @@ case "$subcmd" in
update)
check $@
stop
- update $@
+ update $@
run $@
;;
@@ -482,7 +482,7 @@ case "$subcmd" in
status)
echo "Container: $ARVBOX_CONTAINER"
if docker ps -a --filter "status=running" | grep -E "$ARVBOX_CONTAINER$" -q ; then
- echo "Cluster id: $(getclusterid)"
+ echo "Cluster id: $(getclusterid)"
echo "Status: running"
echo "Container IP: $(getip)"
echo "Published host: $(gethost)"
@@ -563,17 +563,17 @@ case "$subcmd" in
clone)
if test -n "$2" ; then
- mkdir -p "$ARVBOX_BASE/$2"
+ mkdir -p "$ARVBOX_BASE/$2"
cp -a "$ARVBOX_BASE/$1/passenger" \
- "$ARVBOX_BASE/$1/gems" \
- "$ARVBOX_BASE/$1/pip" \
- "$ARVBOX_BASE/$1/npm" \
- "$ARVBOX_BASE/$1/gopath" \
- "$ARVBOX_BASE/$1/Rlibs" \
- "$ARVBOX_BASE/$1/arvados" \
- "$ARVBOX_BASE/$1/composer" \
- "$ARVBOX_BASE/$1/workbench2" \
- "$ARVBOX_BASE/$2"
+ "$ARVBOX_BASE/$1/gems" \
+ "$ARVBOX_BASE/$1/pip" \
+ "$ARVBOX_BASE/$1/npm" \
+ "$ARVBOX_BASE/$1/gopath" \
+ "$ARVBOX_BASE/$1/Rlibs" \
+ "$ARVBOX_BASE/$1/arvados" \
+ "$ARVBOX_BASE/$1/composer" \
+ "$ARVBOX_BASE/$1/workbench2" \
+ "$ARVBOX_BASE/$2"
echo "Created new arvbox $2"
echo "export ARVBOX_CONTAINER=$2"
else
@@ -583,28 +583,28 @@ case "$subcmd" in
;;
root-cert)
- CERT=$PWD/${ARVBOX_CONTAINER}-root-cert.crt
- if test -n "$1" ; then
- CERT="$1"
- fi
- docker exec $ARVBOX_CONTAINER cat /var/lib/arvados/root-cert.pem > "$CERT"
- echo "Certificate copied to $CERT"
- ;;
+ CERT=$PWD/${ARVBOX_CONTAINER}-root-cert.crt
+ if test -n "$1" ; then
+ CERT="$1"
+ fi
+ docker exec $ARVBOX_CONTAINER cat /var/lib/arvados/root-cert.pem > "$CERT"
+ echo "Certificate copied to $CERT"
+ ;;
psql)
- exec docker exec -ti $ARVBOX_CONTAINER bash -c 'PGPASSWORD=$(cat /var/lib/arvados/api_database_pw) exec psql --dbname=arvados_development --host=localhost --username=arvados'
- ;;
+ exec docker exec -ti $ARVBOX_CONTAINER bash -c 'PGPASSWORD=$(cat /var/lib/arvados/api_database_pw) exec psql --dbname=arvados_development --host=localhost --username=arvados'
+ ;;
checkpoint)
- exec docker exec -ti $ARVBOX_CONTAINER bash -c 'PGPASSWORD=$(cat /var/lib/arvados/api_database_pw) exec pg_dump --host=localhost --username=arvados --clean arvados_development > /var/lib/arvados/checkpoint.sql'
- ;;
+ exec docker exec -ti $ARVBOX_CONTAINER bash -c 'PGPASSWORD=$(cat /var/lib/arvados/api_database_pw) exec pg_dump --host=localhost --username=arvados --clean arvados_development > /var/lib/arvados/checkpoint.sql'
+ ;;
restore)
- exec docker exec -ti $ARVBOX_CONTAINER bash -c 'PGPASSWORD=$(cat /var/lib/arvados/api_database_pw) exec psql --dbname=arvados_development --host=localhost --username=arvados --quiet --file=/var/lib/arvados/checkpoint.sql'
- ;;
+ exec docker exec -ti $ARVBOX_CONTAINER bash -c 'PGPASSWORD=$(cat /var/lib/arvados/api_database_pw) exec psql --dbname=arvados_development --host=localhost --username=arvados --quiet --file=/var/lib/arvados/checkpoint.sql'
+ ;;
hotreset)
- exec docker exec -i $ARVBOX_CONTAINER /usr/bin/env GEM_HOME=/var/lib/gems /bin/bash - <<EOF
+ exec docker exec -i $ARVBOX_CONTAINER /usr/bin/env GEM_HOME=/var/lib/gems /bin/bash - <<EOF
sv stop api
sv stop controller
sv stop websockets
@@ -627,21 +627,21 @@ sv restart keepstore0
sv restart keepstore1
sv restart keepproxy
EOF
- ;;
+ ;;
adduser)
- docker exec -ti $ARVBOX_CONTAINER /usr/local/lib/arvbox/edit_users.py /var/lib/arvados/cluster_config.yml.override $(getclusterid) add $@
- docker exec $ARVBOX_CONTAINER sv restart controller
- ;;
+ docker exec -ti $ARVBOX_CONTAINER /usr/local/lib/arvbox/edit_users.py /var/lib/arvados/cluster_config.yml.override $(getclusterid) add $@
+ docker exec $ARVBOX_CONTAINER sv restart controller
+ ;;
removeuser)
- docker exec -ti $ARVBOX_CONTAINER /usr/local/lib/arvbox/edit_users.py /var/lib/arvados/cluster_config.yml.override $(getclusterid) remove $@
- docker exec $ARVBOX_CONTAINER sv restart controller
- ;;
+ docker exec -ti $ARVBOX_CONTAINER /usr/local/lib/arvbox/edit_users.py /var/lib/arvados/cluster_config.yml.override $(getclusterid) remove $@
+ docker exec $ARVBOX_CONTAINER sv restart controller
+ ;;
listusers)
- listusers
- ;;
+ listusers
+ ;;
*)
echo "Arvados-in-a-box https://doc.arvados.org/install/arvbox.html"
@@ -661,9 +661,9 @@ EOF
echo "build <config> build arvbox Docker image"
echo "reboot <config> stop, build arvbox Docker image, run"
echo "rebuild <config> build arvbox Docker image, no layer cache"
- echo "checkpoint create database backup"
- echo "restore restore checkpoint"
- echo "hotreset reset database and restart API without restarting container"
+ echo "checkpoint create database backup"
+ echo "restore restore checkpoint"
+ echo "hotreset reset database and restart API without restarting container"
echo "reset delete arvbox arvados data (be careful!)"
echo "destroy delete all arvbox code and data (be careful!)"
echo "log <service> tail log of specified service"
@@ -671,12 +671,12 @@ EOF
echo "cat <files> get contents of files inside arvbox"
echo "pipe run a bash script piped in from stdin"
echo "sv <start|stop|restart> <service> "
- echo " change state of service inside arvbox"
+ echo " change state of service inside arvbox"
echo "clone <from> <to> clone dev arvbox"
- echo "adduser <username> <email>"
- echo " add a user login"
- echo "removeuser <username>"
- echo " remove user login"
- echo "listusers list user logins"
+ echo "adduser <username> <email>"
+ echo " add a user login"
+ echo "removeuser <username>"
+ echo " remove user login"
+ echo "listusers list user logins"
;;
esac
diff --git a/tools/arvbox/lib/arvbox/docker/Dockerfile.base b/tools/arvbox/lib/arvbox/docker/Dockerfile.base
index 815db22b4..eb52ca5a7 100644
--- a/tools/arvbox/lib/arvbox/docker/Dockerfile.base
+++ b/tools/arvbox/lib/arvbox/docker/Dockerfile.base
@@ -2,17 +2,17 @@
#
# SPDX-License-Identifier: AGPL-3.0
-FROM debian:9
+FROM debian:10
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update && \
apt-get -yq --no-install-recommends -o Acquire::Retries=6 install \
- postgresql-9.6 postgresql-contrib-9.6 git build-essential runit curl libpq-dev \
- libcurl4-openssl-dev libssl1.0-dev zlib1g-dev libpcre3-dev libpam-dev \
+ postgresql postgresql-contrib git build-essential runit curl libpq-dev \
+ libcurl4-openssl-dev libssl-dev zlib1g-dev libpcre3-dev libpam-dev \
openssh-server netcat-traditional \
graphviz bzip2 less sudo virtualenv \
- libpython-dev fuse libfuse-dev \
+ fuse libfuse-dev \
pkg-config libattr1-dev \
libwww-perl libio-socket-ssl-perl libcrypt-ssleay-perl \
libjson-perl nginx gitolite3 lsof libreadline-dev \
@@ -20,14 +20,12 @@ RUN apt-get update && \
linkchecker python3-virtualenv python3-venv xvfb iceweasel \
libgnutls28-dev python3-dev vim cadaver cython gnupg dirmngr \
libsecret-1-dev r-base r-cran-testthat libxml2-dev pandoc \
- python3-setuptools python3-pip openjdk-8-jdk bsdmainutils net-tools \
- ruby2.3 ruby-dev bundler shellinabox && \
- apt-get remove -yq libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev \
- libpython2.7-minimal libpython2.7-stdlib python2.7-minimal python2.7 && \
+ python3-setuptools python3-pip default-jdk-headless bsdmainutils net-tools \
+ ruby ruby-dev bundler shellinabox && \
apt-get clean
-ENV RUBYVERSION_MINOR 2.3
-ENV RUBYVERSION 2.3.5
+ENV RUBYVERSION_MINOR 2.5
+ENV RUBYVERSION 2.5.1
# Install Ruby from source
# RUN cd /tmp && \
@@ -40,10 +38,9 @@ ENV RUBYVERSION 2.3.5
# rm -rf ruby-${RUBYVERSION}
ENV GEM_HOME /var/lib/gems
-ENV GEM_PATH /var/lib/gems
ENV PATH $PATH:/var/lib/gems/bin
-ENV GOVERSION 1.13.6
+ENV GOVERSION 1.15.2
# Install golang binary
RUN curl -f http://storage.googleapis.com/golang/go${GOVERSION}.linux-amd64.tar.gz | \
@@ -60,9 +57,9 @@ RUN apt-key add --no-tty /tmp/8D81803C0EBFCD88.asc && \
rm -f /tmp/8D81803C0EBFCD88.asc
RUN mkdir -p /etc/apt/sources.list.d && \
- echo deb https://download.docker.com/linux/debian/ stretch stable > /etc/apt/sources.list.d/docker.list && \
+ echo deb https://download.docker.com/linux/debian/ buster stable > /etc/apt/sources.list.d/docker.list && \
apt-get update && \
- apt-get -yq --no-install-recommends install docker-ce=17.06.0~ce-0~debian && \
+ apt-get -yq --no-install-recommends install docker-ce=5:19.03.13~3-0~debian-buster && \
apt-get clean
RUN rm -rf /var/lib/postgresql && mkdir -p /var/lib/postgresql
@@ -117,4 +114,4 @@ ADD runit /etc/runit
# Start the supervisor.
ENV SVDIR /etc/service
STOPSIGNAL SIGINT
-CMD ["/sbin/runit"]
+CMD ["/etc/runit/2"]
diff --git a/tools/arvbox/lib/arvbox/docker/common.sh b/tools/arvbox/lib/arvbox/docker/common.sh
index e81e8108e..185467cf7 100644
--- a/tools/arvbox/lib/arvbox/docker/common.sh
+++ b/tools/arvbox/lib/arvbox/docker/common.sh
@@ -2,10 +2,9 @@
#
# SPDX-License-Identifier: AGPL-3.0
-
+export DEBIAN_FRONTEND=noninteractive
export PATH=${PATH}:/usr/local/go/bin:/var/lib/gems/bin
export GEM_HOME=/var/lib/gems
-export GEM_PATH=/var/lib/gems
export npm_config_cache=/var/lib/npm
export npm_config_cache_min=Infinity
export R_LIBS=/var/lib/Rlibs
@@ -60,6 +59,10 @@ fi
run_bundler() {
if test -f Gemfile.lock ; then
+ # The 'gem install bundler line below' is cf.
+ # https://bundler.io/blog/2019/05/14/solutions-for-cant-find-gem-bundler-with-executable-bundle.html,
+ # until we get bundler 2.7.10/3.0.0 or higher
+ gem install bundler --no-document -v "$(grep -A 1 "BUNDLED WITH" Gemfile.lock | tail -n 1|tr -d ' ')"
frozen=--frozen
else
frozen=""
@@ -73,8 +76,8 @@ run_bundler() {
# flock /var/lib/gems/gems.lock gem install --verbose --no-document bundler --version ${bundleversion}
# fi
# fi
- if ! flock /var/lib/gems/gems.lock bundler install --verbose --path $GEM_HOME --local --no-deployment $frozen "$@" ; then
- flock /var/lib/gems/gems.lock bundler install --verbose --path $GEM_HOME --no-deployment $frozen "$@"
+ if ! flock /var/lib/gems/gems.lock bundler install --verbose --local --no-deployment $frozen "$@" ; then
+ flock /var/lib/gems/gems.lock bundler install --verbose --no-deployment $frozen "$@"
fi
}
diff --git a/tools/arvbox/lib/arvbox/docker/createusers.sh b/tools/arvbox/lib/arvbox/docker/createusers.sh
index 58fb41358..de1e7bba9 100755
--- a/tools/arvbox/lib/arvbox/docker/createusers.sh
+++ b/tools/arvbox/lib/arvbox/docker/createusers.sh
@@ -46,7 +46,6 @@ if ! grep "^arvbox:" /etc/passwd >/dev/null 2>/dev/null ; then
cat <<EOF > /etc/profile.d/paths.sh
export PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/go/bin:/var/lib/gems/bin:$(ls -d /usr/local/node-*)/bin
export GEM_HOME=/var/lib/gems
-export GEM_PATH=/var/lib/gems
export npm_config_cache=/var/lib/npm
export npm_config_cache_min=Infinity
export R_LIBS=/var/lib/Rlibs
diff --git a/tools/arvbox/lib/arvbox/docker/service/postgres/run-service b/tools/arvbox/lib/arvbox/docker/service/postgres/run-service
index a0771aa6a..f2377a0c2 100755
--- a/tools/arvbox/lib/arvbox/docker/service/postgres/run-service
+++ b/tools/arvbox/lib/arvbox/docker/service/postgres/run-service
@@ -6,7 +6,7 @@
exec 2>&1
set -eux -o pipefail
-PGVERSION=9.6
+PGVERSION=11
if ! test -d /var/lib/postgresql/$PGVERSION/main ; then
/usr/lib/postgresql/$PGVERSION/bin/initdb --locale=en_US.UTF-8 -D /var/lib/postgresql/$PGVERSION/main
diff --git a/tools/arvbox/lib/arvbox/docker/service/sdk/run-service b/tools/arvbox/lib/arvbox/docker/service/sdk/run-service
index 1ec225ca1..d66bf315b 100755
--- a/tools/arvbox/lib/arvbox/docker/service/sdk/run-service
+++ b/tools/arvbox/lib/arvbox/docker/service/sdk/run-service
@@ -20,20 +20,6 @@ ln -sf /usr/src/arvados/sdk/cli/binstubs/arv /usr/local/bin/arv
export PYCMD=python3
-# Need to install the upstream version of pip because the python-pip package
-# shipped with Debian 9 is patched to change behavior in a way that breaks our
-# use case.
-# See https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=876145
-# When a non-root user attempts to install system packages, it makes the
-# --ignore-installed flag the default (and there is no way to turn it off),
-# this has the effect of making it very hard to share dependencies shared among
-# multiple packages, because it will blindly install the latest version of each
-# dependency requested by each package, even if a compatible package version is
-# already installed.
-if ! pip3 install --no-index --find-links /var/lib/pip pip==9.0.3 ; then
- pip3 install pip==9.0.3
-fi
-
pip_install wheel
cd /usr/src/arvados/sdk/python
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