[ARVADOS] updated: 1.3.0-3287-g5d9198969
Git user
git at public.arvados.org
Thu Oct 8 13:57:03 UTC 2020
Summary of changes:
.licenseignore | 3 +
.../app/controllers/trash_items_controller.rb | 12 +-
apps/workbench/app/models/container_request.rb | 4 +
apps/workbench/app/models/user.rb | 2 +-
build/run-library.sh | 2 +-
doc/Gemfile | 2 +-
doc/Gemfile.lock | 2 +-
doc/_config.yml | 4 +-
doc/_includes/_compute_ping_rb.liquid | 290 -------------
doc/_includes/_example_sdk_go.liquid | 8 +-
doc/_includes/_tutorial_hello_cwl.liquid | 7 +-
.../collection-versioning.html.textile.liquid | 2 +-
doc/admin/federation.html.textile.liquid | 35 +-
doc/admin/upgrading.html.textile.liquid | 6 +-
doc/api/tokens.html.textile.liquid | 2 +-
doc/architecture/Arvados_arch.odg | Bin 14997 -> 17162 bytes
doc/architecture/federation.html.textile.liquid | 8 +-
doc/images/Arvados_arch.svg | 450 ++++++++++-----------
.../install-compute-ping.html.textile.liquid | 14 -
...nstall-manual-prerequisites.html.textile.liquid | 3 +
doc/sdk/cli/reference.html.textile.liquid | 2 +
doc/sdk/go/example.html.textile.liquid | 4 +-
.../git-arvados-guide.html.textile.liquid | 2 +-
doc/zenweb-liquid.rb | 14 +-
lib/config/config.default.yml | 11 +
lib/config/export.go | 1 +
lib/config/generated_config.go | 11 +
lib/controller/federation/conn.go | 17 +-
lib/controller/federation/login_test.go | 2 -
lib/controller/federation/user_test.go | 54 +++
lib/controller/localdb/login.go | 23 +-
lib/controller/localdb/login_testuser.go | 2 +-
lib/dispatchcloud/container/queue.go | 6 +-
lib/dispatchcloud/test/queue.go | 9 +-
lib/install/deps.go | 4 +-
lib/pam/pam-configs-arvados | 9 +-
sdk/cwl/arvados_cwl/runner.py | 2 +-
sdk/cwl/test_with_arvbox.sh | 2 +-
sdk/cwl/tests/federation/arvboxcwl/fed-config.cwl | 2 +-
sdk/cwl/tests/federation/arvboxcwl/start.cwl | 2 +-
sdk/go/arvados/config.go | 9 +-
sdk/go/arvados/fs_collection.go | 9 +-
sdk/go/keepclient/keepclient.go | 12 +-
sdk/go/keepclient/keepclient_test.go | 38 +-
sdk/go/keepclient/support.go | 36 +-
sdk/go/manifest/manifest.go | 68 ++--
sdk/python/tests/fed-migrate/fed-migrate.cwl | 6 +-
sdk/python/tests/fed-migrate/fed-migrate.cwlex | 6 +-
sdk/python/tests/fed-migrate/superuser-tok.cwl | 2 +-
.../api/app/controllers/application_controller.rb | 4 +-
.../v1/api_client_authorizations_controller.rb | 8 +-
.../arvados/v1/collections_controller.rb | 32 +-
.../arvados/v1/container_requests_controller.rb | 4 +-
.../controllers/arvados/v1/groups_controller.rb | 14 +-
.../app/controllers/arvados/v1/jobs_controller.rb | 8 +-
.../app/controllers/arvados/v1/users_controller.rb | 14 +-
services/api/app/models/api_client.rb | 21 +-
.../api/app/models/api_client_authorization.rb | 8 +-
services/api/app/models/user.rb | 3 +-
services/api/config/arvados_config.rb | 1 +
services/api/test/integration/remote_user_test.rb | 89 ++++
services/api/test/unit/api_client_test.rb | 4 +
services/keep-web/cache.go | 21 +-
services/keep-web/s3.go | 174 +++++++-
services/keep-web/s3_test.go | 66 ++-
services/keep-web/s3aws_test.go | 78 ++++
services/keep-web/server_test.go | 1 +
services/keepproxy/keepproxy.go | 44 +-
services/keepstore/volume.go | 3 +-
tools/arvbox/bin/arvbox | 105 ++---
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 166 ++++----
tools/arvbox/lib/arvbox/docker/Dockerfile.demo | 20 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.dev | 8 +-
tools/arvbox/lib/arvbox/docker/api-setup.sh | 38 +-
tools/arvbox/lib/arvbox/docker/cluster-config.sh | 97 ++---
tools/arvbox/lib/arvbox/docker/common.sh | 27 +-
tools/arvbox/lib/arvbox/docker/createusers.sh | 21 +-
tools/arvbox/lib/arvbox/docker/devenv.sh | 3 +-
tools/arvbox/lib/arvbox/docker/go-setup.sh | 13 +-
tools/arvbox/lib/arvbox/docker/keep-setup.sh | 40 +-
tools/arvbox/lib/arvbox/docker/runit/2 | 2 +-
tools/arvbox/lib/arvbox/docker/runsu.sh | 9 +-
.../lib/arvbox/docker/service/api/run-service | 12 +-
.../docker/service/arv-git-httpd/run-service | 2 +-
.../lib/arvbox/docker/service/certificate/run | 8 +-
.../lib/arvbox/docker/service/controller/run | 2 +-
.../service/crunch-dispatch-local/run-service | 2 +-
.../lib/arvbox/docker/service/doc/run-service | 7 +-
.../lib/arvbox/docker/service/gitolite/run-service | 42 +-
.../arvbox/docker/service/keepproxy/run-service | 23 --
tools/arvbox/lib/arvbox/docker/service/nginx/run | 6 +-
.../arvbox/lib/arvbox/docker/service/postgres/run | 3 +-
.../lib/arvbox/docker/service/postgres/run-service | 1 -
.../lib/arvbox/docker/service/ready/run-service | 8 +-
tools/arvbox/lib/arvbox/docker/service/vm/run | 4 +-
.../lib/arvbox/docker/service/vm/run-service | 10 +-
.../lib/arvbox/docker/service/websockets/run | 2 +-
.../arvbox/lib/arvbox/docker/service/workbench/run | 8 +-
.../arvbox/docker/service/workbench/run-service | 22 +-
.../arvbox/docker/service/workbench2/run-service | 8 +-
tools/arvbox/lib/arvbox/docker/waitforpostgres.sh | 2 +-
101 files changed, 1396 insertions(+), 1143 deletions(-)
delete mode 100644 doc/_includes/_compute_ping_rb.liquid
delete mode 100644 doc/install/install-compute-ping.html.textile.liquid
create mode 100644 services/keep-web/s3aws_test.go
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