[ARVADOS] updated: 1.3.0-2723-gcd3966ee0
Git user
git at public.arvados.org
Thu Jun 25 18:40:22 UTC 2020
Summary of changes:
apps/workbench/Gemfile.lock | 4 +-
.../app/views/layouts/application.html.erb | 4 +-
apps/workbench/test/integration/projects_test.rb | 2 +-
build/build-dev-docker-jobs-image.sh | 10 +-
build/run-build-docker-jobs-image.sh | 10 +-
build/run-build-packages-python-and-ruby.sh | 110 ++++--
build/run-library.sh | 17 +-
cmd/arvados-server/cmd.go | 22 +-
doc/_config.yml | 1 +
...overing-deleted-collections.html.textile.liquid | 37 ++
doc/admin/upgrading.html.textile.liquid | 37 +-
doc/api/permission-model.html.textile.liquid | 94 +++--
doc/index.html.liquid | 3 +-
doc/install/setup-login.html.textile.liquid | 16 +
.../getting_started/community.html.textile.liquid | 12 +-
doc/user/reference/api-tokens.html.textile.liquid | 2 +-
lib/config/config.default.yml | 41 ++
lib/config/export.go | 9 +
lib/config/generated_config.go | 41 ++
lib/config/load.go | 18 +-
lib/controller/federation_test.go | 1 +
lib/controller/handler_test.go | 9 +-
lib/controller/localdb/login.go | 33 +-
.../localdb/{login_google.go => login_oidc.go} | 140 +++----
.../{login_google_test.go => login_oidc_test.go} | 208 +++++++++--
lib/controller/proxy.go | 4 +-
lib/recovercollection/cmd.go | 381 +++++++++++++++++++
lib/recovercollection/cmd_test.go | 136 +++++++
sdk/cwl/arvados_cwl/__init__.py | 6 +-
sdk/cwl/arvados_cwl/executor.py | 2 +-
sdk/cwl/setup.py | 4 +-
sdk/cwl/test_with_arvbox.sh | 21 +-
.../perms.go => arvados/blob_signature.go} | 19 +-
sdk/go/arvados/blob_signature_test.go | 88 +++++
sdk/go/arvados/client.go | 70 +++-
sdk/go/arvados/config.go | 10 +
sdk/go/arvados/container.go | 8 +
sdk/go/arvados/keep_service.go | 52 ++-
sdk/go/arvados/keep_service_test.go | 3 +-
sdk/go/keepclient/perms.go | 107 +-----
sdk/go/keepclient/perms_test.go | 103 -----
sdk/python/setup.py | 1 +
services/api/Gemfile.lock | 4 +-
.../api/app/controllers/database_controller.rb | 5 +-
services/api/app/models/arvados_model.rb | 53 ++-
services/api/app/models/database_seeds.rb | 4 +
services/api/app/models/group.rb | 109 +++++-
services/api/app/models/link.rb | 76 +++-
.../api/app/models/materialized_permission.rb | 2 +-
.../trashed_group.rb} | 2 +-
services/api/app/models/user.rb | 148 +++++---
.../db/migrate/20200501150153_permission_table.rb | 362 ++++++++++++++++++
.../migrate/20200602141328_fix_roles_projects.rb | 17 +
services/api/db/structure.sql | 415 +++++++++++++++------
.../20200501150153_permission_table_constants.rb | 85 +++++
services/api/lib/current_api_client.rb | 17 +-
services/api/lib/fix_roles_projects.rb | 73 ++++
services/api/lib/refresh_permission_view.rb | 40 --
services/api/lib/update_permissions.rb | 218 +++++++++++
services/api/test/fixtures/collections.yml | 3 +-
services/api/test/fixtures/groups.yml | 39 +-
services/api/test/fixtures/links.yml | 18 +-
services/api/test/fixtures/users.yml | 14 +
.../test/functional/application_controller_test.rb | 5 +-
.../api/test/functional/arvados/v1/filters_test.rb | 10 +-
.../arvados/v1/groups_controller_test.rb | 41 +-
.../arvados/v1/repositories_controller_test.rb | 4 +-
.../functional/arvados/v1/users_controller_test.rb | 4 +-
services/api/test/integration/groups_test.rb | 13 +-
services/api/test/integration/permissions_test.rb | 15 +-
services/api/test/performance/permission_test.rb | 4 +-
services/api/test/test_helper.rb | 5 +-
services/api/test/unit/arvados_model_test.rb | 6 +-
services/api/test/unit/collection_test.rb | 13 +
services/api/test/unit/group_test.rb | 127 ++++++-
services/api/test/unit/owner_test.rb | 59 ++-
services/api/test/unit/permission_test.rb | 243 ++++++++++--
services/api/test/unit/user_test.rb | 13 +-
services/fuse/tests/test_mount.py | 2 +-
services/keep-balance/balance.go | 45 ++-
services/keep-balance/collection.go | 5 +-
services/keep-balance/collection_test.go | 3 +-
services/keep-balance/keep_service.go | 13 +-
services/keepstore/handler_test.go | 51 +++
services/keepstore/handlers.go | 30 ++
services/keepstore/unix_volume.go | 14 +-
services/keepstore/unix_volume_test.go | 23 ++
services/keepstore/volume_test.go | 9 +-
tools/arvbox/lib/arvbox/docker/cluster-config.sh | 1 +
tools/arvbox/lib/arvbox/docker/common.sh | 8 +-
tools/keep-exercise/keep-exercise.go | 97 +++--
tools/sync-groups/sync-groups.go | 15 +-
tools/sync-groups/sync-groups_test.go | 2 +-
93 files changed, 3559 insertions(+), 921 deletions(-)
create mode 100644 doc/admin/recovering-deleted-collections.html.textile.liquid
rename lib/controller/localdb/{login_google.go => login_oidc.go} (66%)
rename lib/controller/localdb/{login_google_test.go => login_oidc_test.go} (65%)
create mode 100644 lib/recovercollection/cmd.go
create mode 100644 lib/recovercollection/cmd_test.go
copy sdk/go/{keepclient/perms.go => arvados/blob_signature.go} (86%)
create mode 100644 sdk/go/arvados/blob_signature_test.go
delete mode 100644 sdk/go/keepclient/perms_test.go
copy apps/workbench/app/controllers/traits_controller.rb => services/api/app/models/materialized_permission.rb (67%)
copy services/api/app/{helpers/api_client_authorizations_helper.rb => models/trashed_group.rb} (72%)
create mode 100644 services/api/db/migrate/20200501150153_permission_table.rb
create mode 100644 services/api/db/migrate/20200602141328_fix_roles_projects.rb
create mode 100644 services/api/lib/20200501150153_permission_table_constants.rb
create mode 100644 services/api/lib/fix_roles_projects.rb
delete mode 100644 services/api/lib/refresh_permission_view.rb
create mode 100644 services/api/lib/update_permissions.rb
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Those revisions listed above that are new to this repository have
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commit cd3966ee048de85447418f00869eec59b38fd7b2
Merge: 42dc22d84 32f0ac87c
Author: Ward Vandewege <ward at curii.com>
Date: Thu Jun 25 14:39:44 2020 -0400
16476: Merge branch 'master' into 16476-upgrade-arvados-jobs-to-buster
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward at curii.com>
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