[ARVADOS] updated: 1.3.0-2697-g1ab33aed3

[Git user]

Summary of changes:
 .../app/views/layouts/application.html.erb         |   4 +-
 build/run-build-packages-python-and-ruby.sh        | 110 ++++--
 cmd/arvados-server/cmd.go                          |  24 +-
 doc/_config.yml                                    |   1 +
 ...overing-deleted-collections.html.textile.liquid |  37 ++
 doc/install/setup-login.html.textile.liquid        |   2 +
 lib/config/config.default.yml                      |  16 +
 lib/config/export.go                               |   3 +
 lib/config/generated_config.go                     |  16 +
 lib/controller/localdb/login.go                    |  15 +-
 lib/controller/localdb/login_oidc.go               |  34 +-
 lib/controller/localdb/login_oidc_test.go          | 102 ++++-
 lib/{undelete => recovercollection}/cmd.go         | 139 +++++--
 lib/{undelete => recovercollection}/cmd_test.go    |  25 +-
 sdk/cwl/arvados_cwl/__init__.py                    |   6 +-
 sdk/cwl/arvados_cwl/executor.py                    |   2 +-
 sdk/cwl/setup.py                                   |   4 +-
 sdk/go/arvados/config.go                           |  11 +-
 sdk/python/setup.py                                |   1 +
 .../api/app/controllers/database_controller.rb     |   5 +-
 services/api/app/models/arvados_model.rb           |  48 ++-
 services/api/app/models/database_seeds.rb          |   4 +
 services/api/app/models/group.rb                   |  68 +++-
 services/api/app/models/link.rb                    |  38 +-
 .../api/app/models/materialized_permission.rb      |   2 +-
 .../trashed_group.rb}                              |   2 +-
 services/api/app/models/user.rb                    | 148 +++++---
 .../db/migrate/20200501150153_permission_table.rb  | 362 ++++++++++++++++++
 services/api/db/structure.sql                      | 414 +++++++++++++++------
 .../20200501150153_permission_table_constants.rb   |  85 +++++
 services/api/lib/refresh_permission_view.rb        |  40 --
 services/api/lib/update_permissions.rb             | 205 ++++++++++
 services/api/test/fixtures/groups.yml              |   4 +-
 services/api/test/fixtures/users.yml               |  14 +
 .../arvados/v1/groups_controller_test.rb           |  14 +-
 services/api/test/integration/groups_test.rb       |  10 +-
 services/api/test/performance/permission_test.rb   |   2 +-
 services/api/test/test_helper.rb                   |   5 +-
 services/api/test/unit/collection_test.rb          |  13 +
 services/api/test/unit/owner_test.rb               |  27 +-
 services/api/test/unit/permission_test.rb          | 232 ++++++++++--
 services/api/test/unit/user_test.rb                |  13 +-
 services/keepstore/unix_volume.go                  |  14 +-
 services/keepstore/unix_volume_test.go             |  23 ++
 44 files changed, 1911 insertions(+), 433 deletions(-)
 create mode 100644 doc/admin/recovering-deleted-collections.html.textile.liquid
 rename lib/{undelete => recovercollection}/cmd.go (62%)
 rename lib/{undelete => recovercollection}/cmd_test.go (76%)
 copy apps/workbench/app/controllers/traits_controller.rb => services/api/app/models/materialized_permission.rb (67%)
 copy services/api/app/{helpers/api_client_authorizations_helper.rb => models/trashed_group.rb} (72%)
 create mode 100644 services/api/db/migrate/20200501150153_permission_table.rb
 create mode 100644 services/api/lib/20200501150153_permission_table_constants.rb
 delete mode 100644 services/api/lib/refresh_permission_view.rb
 create mode 100644 services/api/lib/update_permissions.rb

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commit 1ab33aed37fdcd448fe224375951089282901c48
Merge: cba1b4145 dc9af1e4f
Author: Ward Vandewege <ward at curii.com>
Date:   Fri Jun 19 11:36:55 2020 -0400

    16513: Merge branch 'master' into 16513-keep-exercise-improvements
    
    Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward at curii.com>


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