[ARVADOS] created: 1.3.0-2833-g070bcb4e6
Git user
git at public.arvados.org
Fri Jul 24 14:59:48 UTC 2020
at 070bcb4e6afda609a371a5bfc7d0927f379e4531 (commit)
commit 070bcb4e6afda609a371a5bfc7d0927f379e4531
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Fri Jul 24 11:47:16 2020 -0300
16470: Fixes test on user model.
Rails 5.1 deprecated the attr_changed? in favor of more explicit methods
because there was ambiguity when called from an 'after' or 'before' callback.
The test UsersTest#test_cannot_set_is_active_to_false_directly started failing
because User.setup is called from both types of callbacks, so its internal
checks weren't passing in some cases.
Also, avoids doing unnecessary queries to get the 'All users' group.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/app/models/user.rb b/services/api/app/models/user.rb
index e1fd53e3d..778ad7d0b 100644
--- a/services/api/app/models/user.rb
+++ b/services/api/app/models/user.rb
@@ -241,11 +241,8 @@ SELECT target_uuid, perm_level
name: 'can_login').destroy_all
# delete "All users" group read permissions for this user
- group = Group.where(name: 'All users').select do |g|
- g[:uuid].match(/-f+$/)
- end.first
Link.where(tail_uuid: self.uuid,
- head_uuid: group[:uuid],
+ head_uuid: all_users_group_uuid,
link_class: 'permission',
name: 'can_read').destroy_all
@@ -272,10 +269,6 @@ SELECT target_uuid, perm_level
self.is_active_was &&
!self.is_active
- group = Group.where(name: 'All users').select do |g|
- g[:uuid].match(/-f+$/)
- end.first
-
# When a user is set up, they are added to the "All users"
# group. A user that is part of the "All users" group is
# allowed to self-activate.
@@ -290,7 +283,7 @@ SELECT target_uuid, perm_level
# explaining the correct way to deactivate a user.
#
if Link.where(tail_uuid: self.uuid,
- head_uuid: group[:uuid],
+ head_uuid: all_users_group_uuid,
link_class: 'permission',
name: 'can_read').any?
errors.add :is_active, "cannot be set to false directly, use the 'Deactivate' button on Workbench, or the 'unsetup' API call"
@@ -711,11 +704,11 @@ update #{PERMISSION_VIEW} set target_uuid=$1 where target_uuid = $2
# add the user to the 'All users' group
def create_user_group_link
return (Link.where(tail_uuid: self.uuid,
- head_uuid: all_users_group[:uuid],
+ head_uuid: all_users_group_uuid,
link_class: 'permission',
name: 'can_read').first or
Link.create(tail_uuid: self.uuid,
- head_uuid: all_users_group[:uuid],
+ head_uuid: all_users_group_uuid,
link_class: 'permission',
name: 'can_read'))
end
@@ -743,7 +736,8 @@ update #{PERMISSION_VIEW} set target_uuid=$1 where target_uuid = $2
# Automatically setup if is_active flag turns on
def setup_on_activate
return if [system_user_uuid, anonymous_user_uuid].include?(self.uuid)
- if is_active && (new_record? || saved_change_to_is_active?)
+ if is_active &&
+ (new_record? || saved_change_to_is_active? || will_save_change_to_is_active?)
setup
end
end
commit 22589907a1c0017965eee98a9839285a1402788b
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Thu Jul 23 17:54:32 2020 -0300
16470: Changes the way of setting the callback that sets the DB timezone.
This avoids intermittent freezes when running tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/config/initializers/time_zone.rb b/services/api/config/initializers/time_zone.rb
index cedd8f3e4..26681d613 100644
--- a/services/api/config/initializers/time_zone.rb
+++ b/services/api/config/initializers/time_zone.rb
@@ -2,7 +2,7 @@
#
# SPDX-License-Identifier: AGPL-3.0
-ActiveRecord::Base.connection.class.set_callback :checkout, :after do
+ActiveRecord::ConnectionAdapters::AbstractAdapter.set_callback :checkout, :before, ->(conn) do
# If the database connection is in a time zone other than UTC,
# "timestamp" values don't behave as desired.
#
@@ -11,5 +11,5 @@ ActiveRecord::Base.connection.class.set_callback :checkout, :after do
# before now()), but false in time zone -0100 (now() returns an
# earlier clock time, and its time zone is dropped when comparing to
# a "timestamp without time zone").
- raw_connection.sync_exec("SET TIME ZONE 'UTC'")
+ conn.execute("SET TIME ZONE 'UTC'")
end
commit e6f2c5ddcd8b8faba1f27cd9890fe8f24e6b72c8
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Tue Jul 21 14:21:49 2020 -0300
16470: Adds an explicit reload before every pending with_lock call.
Previous versions of rails did an implicit reload when calling with_lock,
but from 5.2 calling with_lock with unpersisted changes will raise an
exception.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/app/controllers/arvados/v1/containers_controller.rb b/services/api/app/controllers/arvados/v1/containers_controller.rb
index 041f55947..b2324a571 100644
--- a/services/api/app/controllers/arvados/v1/containers_controller.rb
+++ b/services/api/app/controllers/arvados/v1/containers_controller.rb
@@ -29,7 +29,7 @@ class Arvados::V1::ContainersController < ApplicationController
end
def update
- @object.with_lock do
+ @object.reload.with_lock do
super
end
end
diff --git a/services/api/app/models/container.rb b/services/api/app/models/container.rb
index adfbf6042..16f8cd798 100644
--- a/services/api/app/models/container.rb
+++ b/services/api/app/models/container.rb
@@ -339,7 +339,7 @@ class Container < ArvadosModel
end
def lock
- self.with_lock do
+ self.reload.with_lock do
if self.state != Queued
raise LockFailedError.new("cannot lock when #{self.state}")
end
@@ -357,7 +357,7 @@ class Container < ArvadosModel
end
def unlock
- self.with_lock do
+ self.reload.with_lock do
if self.state != Locked
raise InvalidStateTransitionError.new("cannot unlock when #{self.state}")
end
@@ -654,7 +654,7 @@ class Container < ArvadosModel
# This container is finished so finalize any associated container requests
# that are associated with this container.
if saved_change_to_state? and self.final?
- # These get wiped out by with_lock (which reloads the record),
+ # These get wiped out (with_lock requires to explicitly reload the record),
# so record them now in case we need to schedule a retry.
prev_secret_mounts = secret_mounts_before_last_save
prev_runtime_token = runtime_token_before_last_save
@@ -665,7 +665,7 @@ class Container < ArvadosModel
# transaction finishes. This ensure that concurrent container
# requests that try to reuse this container are finalized (on
# Complete) or don't reuse it (on Cancelled).
- self.with_lock do
+ self.reload.with_lock do
act_as_system_user do
if self.state == Cancelled
retryable_requests = ContainerRequest.where("container_uuid = ? and priority > 0 and state = 'Committed' and container_count < container_count_max", uuid)
@@ -690,7 +690,7 @@ class Container < ArvadosModel
}
c = Container.create! c_attrs
retryable_requests.each do |cr|
- cr.with_lock do
+ cr.reload.with_lock do
leave_modified_by_user_alone do
# Use row locking because this increments container_count
cr.container_uuid = c.uuid
diff --git a/services/api/app/models/job.rb b/services/api/app/models/job.rb
index 37e5f455d..31179f066 100644
--- a/services/api/app/models/job.rb
+++ b/services/api/app/models/job.rb
@@ -136,7 +136,7 @@ class Job < ArvadosModel
end
def lock locked_by_uuid
- with_lock do
+ reload.with_lock do
unless self.state == Queued and self.is_locked_by_uuid.nil?
raise AlreadyLockedError
end
diff --git a/services/api/test/unit/collection_test.rb b/services/api/test/unit/collection_test.rb
index addea8306..dbfdae95a 100644
--- a/services/api/test/unit/collection_test.rb
+++ b/services/api/test/unit/collection_test.rb
@@ -515,7 +515,7 @@ class CollectionTest < ActiveSupport::TestCase
c2.description = 'foo collection'
c1.save!
assert_equal 1, c2.version
- # with_lock forces a reload, so this shouldn't produce an unique violation error
+ # with_lock requires a reload, so this shouldn't produce an unique violation error
c2.save!
assert_equal 3, c2.version
assert_equal 'foo collection', c2.description
commit 037e4cabc957defee57e4f639045691602f0bce6
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Tue Jul 21 11:18:24 2020 -0300
16470: Removes cleanup code on test. All threads share a db connection.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/test/unit/log_test.rb b/services/api/test/unit/log_test.rb
index a1c8ff8a9..016a0e4eb 100644
--- a/services/api/test/unit/log_test.rb
+++ b/services/api/test/unit/log_test.rb
@@ -378,19 +378,6 @@ class LogTest < ActiveSupport::TestCase
sleep 0.1
end
assert_operator remaining_audit_logs.count, :<, initial_log_count
- ensure
- # The test framework rolls back our transactions, but that
- # doesn't undo the deletes we did from separate threads.
- ActiveRecord::Base.connection.exec_query 'ROLLBACK'
- Thread.new do
- begin
- dc = DatabaseController.new
- dc.define_singleton_method :render do |*args| end
- dc.reset
- ensure
- ActiveRecord::Base.connection.close
- end
- end.join
end
end
end
commit 8d97602c403fc2ad20de62745d510290c00d036b
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Tue Jul 21 10:22:41 2020 -0300
16470: Removes unnecessary gem that may also cause issues.
The gem doesn't seem to be used anywhere and may not be needed
anymore.
See: https://github.com/rails/rails/issues/28197#issuecomment-291120834
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/Gemfile b/services/api/Gemfile
index fddb64a28..844b789af 100644
--- a/services/api/Gemfile
+++ b/services/api/Gemfile
@@ -9,7 +9,6 @@ gem 'responders', '~> 2.0'
group :test, :development do
gem 'factory_bot_rails'
- gem 'database_cleaner'
# As of now (2019-03-27) There's an open issue about incompatibilities with
# newer versions of this gem: https://github.com/rails/rails-perftest/issues/38
diff --git a/services/api/Gemfile.lock b/services/api/Gemfile.lock
index a2b787e37..90306bb58 100644
--- a/services/api/Gemfile.lock
+++ b/services/api/Gemfile.lock
@@ -92,7 +92,6 @@ GEM
net-ssh-gateway (>= 1.1.0)
concurrent-ruby (1.1.6)
crass (1.0.6)
- database_cleaner (1.7.0)
erubi (1.9.0)
execjs (2.7.0)
extlib (0.9.16)
@@ -283,7 +282,6 @@ DEPENDENCIES
andand
arvados!
byebug
- database_cleaner
factory_bot_rails
httpclient
jquery-rails
@@ -317,4 +315,4 @@ DEPENDENCIES
uglifier (~> 2.0)
BUNDLED WITH
- 1.16.6
+ 1.17.3
commit 6186c4b90b41993bbe8b7b7036697103d218a979
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Mon Jul 20 11:40:38 2020 -0300
16470: Fixes reload() API to match the overridden function.
reload()'s documentation states: "...in addition to the in-place modification
the method returns self for convenience."
https://api.rubyonrails.org/v5.1.7/classes/ActiveRecord/Persistence.html#method-i-reload
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/app/models/arvados_model.rb b/services/api/app/models/arvados_model.rb
index 01a31adb9..80ea0c0b7 100644
--- a/services/api/app/models/arvados_model.rb
+++ b/services/api/app/models/arvados_model.rb
@@ -137,6 +137,7 @@ class ArvadosModel < ApplicationRecord
def reload(*args)
super
log_start_state
+ self
end
def self.create raw_params={}, *args
diff --git a/services/api/app/models/collection.rb b/services/api/app/models/collection.rb
index 996981dba..8f724e1f5 100644
--- a/services/api/app/models/collection.rb
+++ b/services/api/app/models/collection.rb
@@ -262,8 +262,7 @@ class Collection < ArvadosModel
# Put aside the changes because with_lock requires an explicit record reload
changes = self.changes
snapshot = nil
- reload
- with_lock do
+ reload.with_lock do
# Copy the original state to save it as old version
if should_preserve_version
snapshot = self.dup
commit b56a28d1aa985af24a2ac61084f8f6a20ec9ef15
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Mon Jul 20 11:36:06 2020 -0300
16470: Avoids DB connection closing when running tests on missing places.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/lib/audit_logs.rb b/services/api/lib/audit_logs.rb
index 886c88738..2b5e3b8ab 100644
--- a/services/api/lib/audit_logs.rb
+++ b/services/api/lib/audit_logs.rb
@@ -62,7 +62,12 @@ module AuditLogs
rescue => e
Rails.logger.error "#{e.class}: #{e}\n#{e.backtrace.join("\n\t")}"
ensure
- ActiveRecord::Base.connection.close
+ # Rails 5.1+ makes test threads share a database connection, so we can't
+ # close a connection shared with other threads.
+ # https://github.com/rails/rails/commit/deba47799ff905f778e0c98a015789a1327d5087
+ if Rails.env != "test"
+ ActiveRecord::Base.connection.close
+ end
end
end
end
diff --git a/services/api/lib/sweep_trashed_objects.rb b/services/api/lib/sweep_trashed_objects.rb
index 8613c749c..c09896567 100644
--- a/services/api/lib/sweep_trashed_objects.rb
+++ b/services/api/lib/sweep_trashed_objects.rb
@@ -69,7 +69,12 @@ module SweepTrashedObjects
rescue => e
Rails.logger.error "#{e.class}: #{e}\n#{e.backtrace.join("\n\t")}"
ensure
- ActiveRecord::Base.connection.close
+ # Rails 5.1+ makes test threads share a database connection, so we can't
+ # close a connection shared with other threads.
+ # https://github.com/rails/rails/commit/deba47799ff905f778e0c98a015789a1327d5087
+ if Rails.env != "test"
+ ActiveRecord::Base.connection.close
+ end
end
end
end
commit 14b14c8a57ef2e2563da56416371e5e3dc8f2067
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Mon Jul 20 11:35:00 2020 -0300
16470: Fixes internal API usage.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/lib/update_priority.rb b/services/api/lib/update_priority.rb
index 3a65c71fe..6c17f1bd0 100644
--- a/services/api/lib/update_priority.rb
+++ b/services/api/lib/update_priority.rb
@@ -33,7 +33,7 @@ module UpdatePriority
# priority==0 but should be >0:
act_as_system_user do
Container.
- joins("JOIN container_requests ON container_requests.container_uuid=containers.uuid AND container_requests.state=#{Container.sanitize(ContainerRequest::Committed)} AND container_requests.priority>0").
+ joins("JOIN container_requests ON container_requests.container_uuid=containers.uuid AND container_requests.state=#{ActiveRecord::Base.connection.quote(ContainerRequest::Committed)} AND container_requests.priority>0").
where('containers.state IN (?) AND containers.priority=0 AND container_requests.uuid IS NOT NULL',
[Container::Queued, Container::Locked, Container::Running]).
map(&:update_priority!)
commit afc6df867f47090541fcbff82604ead25247d169
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Wed Jul 15 11:14:09 2020 -0300
16470: Fixes tests. Avoids closing a DB connection when using threads on tests.
From Rails 5.1, test threads share a database connection, so UpdatePriority
won't try to close DB connections when running from tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/lib/update_priority.rb b/services/api/lib/update_priority.rb
index c688ac008..3a65c71fe 100644
--- a/services/api/lib/update_priority.rb
+++ b/services/api/lib/update_priority.rb
@@ -55,7 +55,12 @@ module UpdatePriority
rescue => e
Rails.logger.error "#{e.class}: #{e}\n#{e.backtrace.join("\n\t")}"
ensure
- ActiveRecord::Base.connection.close
+ # Rails 5.1+ makes test threads share a database connection, so we can't
+ # close a connection shared with other threads.
+ # https://github.com/rails/rails/commit/deba47799ff905f778e0c98a015789a1327d5087
+ if Rails.env != "test"
+ ActiveRecord::Base.connection.close
+ end
end
end
end
diff --git a/services/api/test/functional/arvados/v1/keep_services_controller_test.rb b/services/api/test/functional/arvados/v1/keep_services_controller_test.rb
index ce1d447f1..0fbc7625c 100644
--- a/services/api/test/functional/arvados/v1/keep_services_controller_test.rb
+++ b/services/api/test/functional/arvados/v1/keep_services_controller_test.rb
@@ -50,8 +50,7 @@ class Arvados::V1::KeepServicesControllerTest < ActionController::TestCase
refute_empty expect_rvz
authorize_with :active
get :index,
- params: {:format => :json},
- headers: auth(:active)
+ params: {:format => :json}
assert_response :success
json_response['items'].each do |svc|
url = "#{svc['service_ssl_flag'] ? 'https' : 'http'}://#{svc['service_host']}:#{svc['service_port']}/"
commit 571941e8de0a95b4e55e2b81cb8e6a8dba69ce34
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Mon Jul 6 19:07:29 2020 -0300
16470: Fixes deprecation warnings on unit tests.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/app/models/api_client_authorization.rb b/services/api/app/models/api_client_authorization.rb
index 6057c4d26..a4d49c35c 100644
--- a/services/api/app/models/api_client_authorization.rb
+++ b/services/api/app/models/api_client_authorization.rb
@@ -325,6 +325,7 @@ class ApiClientAuthorization < ArvadosModel
end
def log_update
- super unless (changed - UNLOGGED_CHANGES).empty?
+
+ super unless (saved_changes.keys - UNLOGGED_CHANGES).empty?
end
end
diff --git a/services/api/app/models/collection.rb b/services/api/app/models/collection.rb
index caac5611e..996981dba 100644
--- a/services/api/app/models/collection.rb
+++ b/services/api/app/models/collection.rb
@@ -259,9 +259,10 @@ class Collection < ArvadosModel
should_preserve_version = should_preserve_version? # Time sensitive, cache value
return(yield) unless (should_preserve_version || syncable_updates.any?)
- # Put aside the changes because with_lock forces a record reload
+ # Put aside the changes because with_lock requires an explicit record reload
changes = self.changes
snapshot = nil
+ reload
with_lock do
# Copy the original state to save it as old version
if should_preserve_version
diff --git a/services/api/app/models/container.rb b/services/api/app/models/container.rb
index 912a801a6..adfbf6042 100644
--- a/services/api/app/models/container.rb
+++ b/services/api/app/models/container.rb
@@ -138,7 +138,7 @@ class Container < ArvadosModel
end
def propagate_priority
- return true unless priority_changed?
+ return true unless saved_change_to_priority?
act_as_system_user do
# Update the priority of child container requests to match new
# priority of the parent container (ignoring requests with no
@@ -556,7 +556,7 @@ class Container < ArvadosModel
# If self.final?, this update is superfluous: the final log/output
# update will be done when handle_completed calls finalize! on
# each requesting CR.
- return if self.final? || !self.log_changed?
+ return if self.final? || !saved_change_to_log?
leave_modified_by_user_alone do
ContainerRequest.where(container_uuid: self.uuid).each do |cr|
cr.update_collections(container: self, collections: ['log'])
@@ -653,11 +653,11 @@ class Container < ArvadosModel
def handle_completed
# This container is finished so finalize any associated container requests
# that are associated with this container.
- if self.state_changed? and self.final?
+ if saved_change_to_state? and self.final?
# These get wiped out by with_lock (which reloads the record),
# so record them now in case we need to schedule a retry.
- prev_secret_mounts = self.secret_mounts_was
- prev_runtime_token = self.runtime_token_was
+ prev_secret_mounts = secret_mounts_before_last_save
+ prev_runtime_token = runtime_token_before_last_save
# Need to take a lock on the container to ensure that any
# concurrent container requests that might try to reuse this
diff --git a/services/api/app/models/container_request.rb b/services/api/app/models/container_request.rb
index b30b8cc1d..77536eee4 100644
--- a/services/api/app/models/container_request.rb
+++ b/services/api/app/models/container_request.rb
@@ -472,10 +472,10 @@ class ContainerRequest < ArvadosModel
end
def update_priority
- return unless state_changed? || priority_changed? || container_uuid_changed?
+ return unless saved_change_to_state? || saved_change_to_priority? || saved_change_to_container_uuid?
act_as_system_user do
Container.
- where('uuid in (?)', [self.container_uuid_was, self.container_uuid].compact).
+ where('uuid in (?)', [container_uuid_before_last_save, self.container_uuid].compact).
map(&:update_priority!)
end
end
diff --git a/services/api/app/models/group.rb b/services/api/app/models/group.rb
index 02c6a242f..7e015f356 100644
--- a/services/api/app/models/group.rb
+++ b/services/api/app/models/group.rb
@@ -57,7 +57,7 @@ class Group < ArvadosModel
end
def update_trash
- if trash_at_changed? or owner_uuid_changed?
+ if saved_change_to_trash_at? or saved_change_to_owner_uuid?
# The group was added or removed from the trash.
#
# Strategy:
@@ -97,7 +97,7 @@ on conflict (group_uuid) do update set trash_at=EXCLUDED.trash_at;
end
def after_ownership_change
- if owner_uuid_changed?
+ if saved_change_to_owner_uuid?
update_permissions self.owner_uuid, self.uuid, CAN_MANAGE_PERM
end
end
diff --git a/services/api/app/models/node.rb b/services/api/app/models/node.rb
index d200bb801..c8b463696 100644
--- a/services/api/app/models/node.rb
+++ b/services/api/app/models/node.rb
@@ -168,7 +168,7 @@ class Node < ArvadosModel
end
def dns_server_update
- if ip_address_changed? && ip_address
+ if saved_change_to_ip_address? && ip_address
Node.where('id != ? and ip_address = ?',
id, ip_address).each do |stale_node|
# One or more(!) stale node records have the same IP address
@@ -178,10 +178,10 @@ class Node < ArvadosModel
stale_node.update_attributes!(ip_address: nil)
end
end
- if hostname_was && hostname_changed?
- self.class.dns_server_update(hostname_was, UNUSED_NODE_IP)
+ if hostname_before_last_save && saved_change_to_hostname?
+ self.class.dns_server_update(hostname_before_last_save, UNUSED_NODE_IP)
end
- if hostname && (hostname_changed? || ip_address_changed?)
+ if hostname && (saved_change_to_hostname? || saved_change_to_ip_address?)
self.class.dns_server_update(hostname, ip_address || UNUSED_NODE_IP)
end
end
diff --git a/services/api/app/models/user.rb b/services/api/app/models/user.rb
index 64facaa98..e1fd53e3d 100644
--- a/services/api/app/models/user.rb
+++ b/services/api/app/models/user.rb
@@ -23,32 +23,32 @@ class User < ArvadosModel
validate :must_unsetup_to_deactivate
before_update :prevent_privilege_escalation
before_update :prevent_inactive_admin
- before_update :verify_repositories_empty, :if => Proc.new { |user|
- user.username.nil? and user.username_changed?
+ before_update :verify_repositories_empty, :if => Proc.new {
+ username.nil? and username_changed?
}
before_update :setup_on_activate
before_create :check_auto_admin
- before_create :set_initial_username, :if => Proc.new { |user|
- user.username.nil? and user.email
+ before_create :set_initial_username, :if => Proc.new {
+ username.nil? and email
}
after_create :after_ownership_change
after_create :setup_on_activate
after_create :add_system_group_permission_link
- after_create :auto_setup_new_user, :if => Proc.new { |user|
+ after_create :auto_setup_new_user, :if => Proc.new {
Rails.configuration.Users.AutoSetupNewUsers and
- (user.uuid != system_user_uuid) and
- (user.uuid != anonymous_user_uuid)
+ (uuid != system_user_uuid) and
+ (uuid != anonymous_user_uuid)
}
after_create :send_admin_notifications
before_update :before_ownership_change
after_update :after_ownership_change
after_update :send_profile_created_notification
- after_update :sync_repository_names, :if => Proc.new { |user|
- (user.uuid != system_user_uuid) and
- user.username_changed? and
- (not user.username_was.nil?)
+ after_update :sync_repository_names, :if => Proc.new {
+ (uuid != system_user_uuid) and
+ saved_change_to_username? and
+ (not username_before_last_save.nil?)
}
before_destroy :clear_permissions
after_destroy :remove_self_from_permissions
@@ -151,7 +151,7 @@ SELECT 1 FROM #{PERMISSION_VIEW}
end
def after_ownership_change
- if owner_uuid_changed?
+ if saved_change_to_owner_uuid?
update_permissions self.owner_uuid, self.uuid, CAN_MANAGE_PERM
end
end
@@ -743,7 +743,7 @@ update #{PERMISSION_VIEW} set target_uuid=$1 where target_uuid = $2
# Automatically setup if is_active flag turns on
def setup_on_activate
return if [system_user_uuid, anonymous_user_uuid].include?(self.uuid)
- if is_active && (new_record? || is_active_changed?)
+ if is_active && (new_record? || saved_change_to_is_active?)
setup
end
end
@@ -766,8 +766,8 @@ update #{PERMISSION_VIEW} set target_uuid=$1 where target_uuid = $2
# Send notification if the user saved profile for the first time
def send_profile_created_notification
- if self.prefs_changed?
- if self.prefs_was.andand.empty? || !self.prefs_was.andand['profile']
+ if saved_change_to_prefs?
+ if prefs_before_last_save.andand.empty? || !prefs_before_last_save.andand['profile']
profile_notification_address = Rails.configuration.Users.UserProfileNotificationAddress
ProfileNotifier.profile_created(self, profile_notification_address).deliver_now if profile_notification_address and !profile_notification_address.empty?
end
@@ -782,7 +782,7 @@ update #{PERMISSION_VIEW} set target_uuid=$1 where target_uuid = $2
end
def sync_repository_names
- old_name_re = /^#{Regexp.escape(username_was)}\//
+ old_name_re = /^#{Regexp.escape(username_before_last_save)}\//
name_sub = "#{username}/"
repositories.find_each do |repo|
repo.name = repo.name.sub(old_name_re, name_sub)
commit 95a5dbed26aea1e0ae7ed1be7c85e4b4e88b9c66
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Mon Jul 6 16:44:19 2020 -0300
16470: Updates Rails API to 5.1.7
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/services/api/Gemfile b/services/api/Gemfile
index 18797d69c..fddb64a28 100644
--- a/services/api/Gemfile
+++ b/services/api/Gemfile
@@ -4,7 +4,7 @@
source 'https://rubygems.org'
-gem 'rails', '~> 5.0.0'
+gem 'rails', '5.1.7'
gem 'responders', '~> 2.0'
group :test, :development do
diff --git a/services/api/Gemfile.lock b/services/api/Gemfile.lock
index 127a09ee2..a2b787e37 100644
--- a/services/api/Gemfile.lock
+++ b/services/api/Gemfile.lock
@@ -22,39 +22,39 @@ GIT
GEM
remote: https://rubygems.org/
specs:
- actioncable (5.0.7.2)
- actionpack (= 5.0.7.2)
- nio4r (>= 1.2, < 3.0)
+ actioncable (5.1.7)
+ actionpack (= 5.1.7)
+ nio4r (~> 2.0)
websocket-driver (~> 0.6.1)
- actionmailer (5.0.7.2)
- actionpack (= 5.0.7.2)
- actionview (= 5.0.7.2)
- activejob (= 5.0.7.2)
+ actionmailer (5.1.7)
+ actionpack (= 5.1.7)
+ actionview (= 5.1.7)
+ activejob (= 5.1.7)
mail (~> 2.5, >= 2.5.4)
rails-dom-testing (~> 2.0)
- actionpack (5.0.7.2)
- actionview (= 5.0.7.2)
- activesupport (= 5.0.7.2)
+ actionpack (5.1.7)
+ actionview (= 5.1.7)
+ activesupport (= 5.1.7)
rack (~> 2.0)
- rack-test (~> 0.6.3)
+ rack-test (>= 0.6.3)
rails-dom-testing (~> 2.0)
rails-html-sanitizer (~> 1.0, >= 1.0.2)
- actionview (5.0.7.2)
- activesupport (= 5.0.7.2)
+ actionview (5.1.7)
+ activesupport (= 5.1.7)
builder (~> 3.1)
- erubis (~> 2.7.0)
+ erubi (~> 1.4)
rails-dom-testing (~> 2.0)
rails-html-sanitizer (~> 1.0, >= 1.0.3)
- activejob (5.0.7.2)
- activesupport (= 5.0.7.2)
+ activejob (5.1.7)
+ activesupport (= 5.1.7)
globalid (>= 0.3.6)
- activemodel (5.0.7.2)
- activesupport (= 5.0.7.2)
- activerecord (5.0.7.2)
- activemodel (= 5.0.7.2)
- activesupport (= 5.0.7.2)
- arel (~> 7.0)
- activesupport (5.0.7.2)
+ activemodel (5.1.7)
+ activesupport (= 5.1.7)
+ activerecord (5.1.7)
+ activemodel (= 5.1.7)
+ activesupport (= 5.1.7)
+ arel (~> 8.0)
+ activesupport (5.1.7)
concurrent-ruby (~> 1.0, >= 1.0.2)
i18n (>= 0.7, < 2)
minitest (~> 5.1)
@@ -66,9 +66,9 @@ GEM
addressable (2.7.0)
public_suffix (>= 2.0.2, < 5.0)
andand (1.3.3)
- arel (7.1.4)
- arvados-google-api-client (0.8.7.3)
- activesupport (>= 3.2, < 5.1)
+ arel (8.0.0)
+ arvados-google-api-client (0.8.7.4)
+ activesupport (>= 3.2, < 5.3)
addressable (~> 2.3)
autoparse (~> 0.3)
extlib (~> 0.9)
@@ -82,7 +82,7 @@ GEM
addressable (>= 2.3.1)
extlib (>= 0.9.15)
multi_json (>= 1.0.0)
- builder (3.2.3)
+ builder (3.2.4)
byebug (11.0.1)
capistrano (2.15.9)
highline
@@ -90,10 +90,10 @@ GEM
net-sftp (>= 2.0.0)
net-ssh (>= 2.0.14)
net-ssh-gateway (>= 1.1.0)
- concurrent-ruby (1.1.5)
- crass (1.0.4)
+ concurrent-ruby (1.1.6)
+ crass (1.0.6)
database_cleaner (1.7.0)
- erubis (2.7.0)
+ erubi (1.9.0)
execjs (2.7.0)
extlib (0.9.16)
factory_bot (5.0.2)
@@ -133,15 +133,15 @@ GEM
railties (>= 4)
request_store (~> 1.0)
logstash-event (1.2.02)
- loofah (2.2.3)
+ loofah (2.6.0)
crass (~> 1.0.2)
nokogiri (>= 1.5.9)
mail (2.7.1)
mini_mime (>= 0.1.1)
memoist (0.16.2)
metaclass (0.0.4)
- method_source (0.9.2)
- mini_mime (1.0.1)
+ method_source (1.0.0)
+ mini_mime (1.0.2)
mini_portile2 (2.4.0)
minitest (5.10.3)
mocha (1.8.0)
@@ -156,8 +156,8 @@ GEM
net-ssh (5.2.0)
net-ssh-gateway (2.0.0)
net-ssh (>= 4.0.0)
- nio4r (2.3.1)
- nokogiri (1.10.8)
+ nio4r (2.5.2)
+ nokogiri (1.10.10)
mini_portile2 (~> 2.4.0)
oauth2 (1.4.1)
faraday (>= 0.8, < 0.16.0)
@@ -181,19 +181,19 @@ GEM
power_assert (1.1.4)
public_suffix (4.0.3)
rack (2.2.3)
- rack-test (0.6.3)
- rack (>= 1.0)
- rails (5.0.7.2)
- actioncable (= 5.0.7.2)
- actionmailer (= 5.0.7.2)
- actionpack (= 5.0.7.2)
- actionview (= 5.0.7.2)
- activejob (= 5.0.7.2)
- activemodel (= 5.0.7.2)
- activerecord (= 5.0.7.2)
- activesupport (= 5.0.7.2)
+ rack-test (1.1.0)
+ rack (>= 1.0, < 3)
+ rails (5.1.7)
+ actioncable (= 5.1.7)
+ actionmailer (= 5.1.7)
+ actionpack (= 5.1.7)
+ actionview (= 5.1.7)
+ activejob (= 5.1.7)
+ activemodel (= 5.1.7)
+ activerecord (= 5.1.7)
+ activesupport (= 5.1.7)
bundler (>= 1.3.0)
- railties (= 5.0.7.2)
+ railties (= 5.1.7)
sprockets-rails (>= 2.0.0)
rails-controller-testing (1.0.4)
actionpack (>= 5.0.1.x)
@@ -202,14 +202,14 @@ GEM
rails-dom-testing (2.0.3)
activesupport (>= 4.2.0)
nokogiri (>= 1.6)
- rails-html-sanitizer (1.0.4)
- loofah (~> 2.2, >= 2.2.2)
+ rails-html-sanitizer (1.3.0)
+ loofah (~> 2.3)
rails-observers (0.1.5)
activemodel (>= 4.0)
rails-perftest (0.0.7)
- railties (5.0.7.2)
- actionpack (= 5.0.7.2)
- activesupport (= 5.0.7.2)
+ railties (5.1.7)
+ actionpack (= 5.1.7)
+ activesupport (= 5.1.7)
method_source
rake (>= 0.8.7)
thor (>= 0.18.1, < 2.0)
@@ -263,10 +263,10 @@ GEM
therubyracer (0.12.3)
libv8 (~> 3.16.14.15)
ref
- thor (0.20.3)
+ thor (1.0.1)
thread_safe (0.3.6)
tilt (2.0.8)
- tzinfo (1.2.6)
+ tzinfo (1.2.7)
thread_safe (~> 0.1)
uglifier (2.7.2)
execjs (>= 0.3.0)
@@ -298,7 +298,7 @@ DEPENDENCIES
optimist
passenger
pg (~> 1.0)
- rails (~> 5.0.0)
+ rails (= 5.1.7)
rails-controller-testing
rails-observers
rails-perftest
commit d0ec272d34a010845816ba2cac9023850d953aba
Author: Lucas Di Pentima <lucas at di-pentima.com.ar>
Date: Wed Jul 1 18:42:41 2020 -0300
16470: Bumps dependency on activesupport for rails upgrade.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas at di-pentima.com.ar>
diff --git a/sdk/cli/arvados-cli.gemspec b/sdk/cli/arvados-cli.gemspec
index 88a5ceece..f60adf538 100644
--- a/sdk/cli/arvados-cli.gemspec
+++ b/sdk/cli/arvados-cli.gemspec
@@ -31,7 +31,7 @@ Gem::Specification.new do |s|
s.summary = "Arvados CLI tools"
s.description = "Arvados command line tools, git commit #{git_hash}"
s.authors = ["Arvados Authors"]
- s.email = 'gem-dev at curoverse.com'
+ s.email = 'gem-dev at arvados.org'
#s.bindir = '.'
s.licenses = ['Apache-2.0']
s.files = ["bin/arv", "bin/arv-tag", "LICENSE-2.0.txt"]
@@ -42,7 +42,7 @@ Gem::Specification.new do |s|
# Our google-api-client dependency used to be < 0.9, but that could be
# satisfied by the buggy 0.9.pre*. https://dev.arvados.org/issues/9213
s.add_runtime_dependency 'arvados-google-api-client', '~> 0.6', '>= 0.6.3', '<0.8.9'
- s.add_runtime_dependency 'activesupport', '>= 3.2.13', '< 5.1'
+ s.add_runtime_dependency 'activesupport', '>= 3.2.13', '< 5.3'
s.add_runtime_dependency 'json', '>= 1.7.7', '<3'
s.add_runtime_dependency 'optimist', '~> 3.0'
s.add_runtime_dependency 'andand', '~> 1.3', '>= 1.3.3'
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