[ARVADOS] updated: 1.3.0-2947-gee908b109
Git user
git at public.arvados.org
Thu Aug 20 14:28:38 UTC 2020
Summary of changes:
.../app/views/application/_show_sharing.html.erb | 2 +
build/check-copyright-notices | 3 -
build/package-build-dockerfiles/centos7/Dockerfile | 10 +-
.../package-build-dockerfiles/debian10/Dockerfile | 6 +-
build/package-build-dockerfiles/debian9/Dockerfile | 6 +-
.../ubuntu1604/Dockerfile | 4 +-
.../ubuntu1804/Dockerfile | 4 +-
...r.sh => test-package-arvados-docker-cleaner.sh} | 2 +-
.../test-package-arvados-node-manager.sh | 15 -
.../test-package-python-arvados-cwl-runner.sh | 1 -
.../test-package-python-arvados-fuse.sh | 1 -
.../test-package-python-arvados-python-client.sh | 1 -
.../package-testing/test-package-python-cwltest.sh | 1 -
...ackage-python27-python-arvados-python-client.sh | 13 -
.../test-package-python3-arvados-cwl-runner.sh | 2 +-
.../test-package-python3-arvados-python-client.sh | 2 +-
... => test-package-python3-crunchstat-summary.sh} | 6 +-
...l-runner.sh => test-package-python3-cwltest.sh} | 2 +-
.../test-package-python3-python-arvados-fuse.sh | 9 +-
...ckage-rh-python36-python-arvados-cwl-runner.sh} | 2 +-
...est-package-rh-python36-python-arvados-fuse.sh} | 0
...ckage-rh-python36-python-crunchstat-summary.sh} | 2 +-
... => test-package-rh-python36-python-cwltest.sh} | 2 +-
build/rails-package-scripts/README.md | 2 +-
build/rails-package-scripts/arvados-api-server.sh | 4 +-
build/rails-package-scripts/prerm.sh | 1 -
build/run-build-packages-one-target.sh | 36 +-
build/run-build-packages-python-and-ruby.sh | 2 -
build/run-build-packages.sh | 31 +-
build/run-library.sh | 62 +-
build/run-tests.sh | 28 +-
doc/admin/management-token.html.textile.liquid | 20 +-
doc/admin/metrics.html.textile.liquid | 46 --
doc/admin/spot-instances.html.textile.liquid | 23 +-
doc/admin/upgrading.html.textile.liquid | 10 +-
doc/architecture/index.html.textile.liquid | 4 +-
doc/install/install-keep-web.html.textile.liquid | 1 +
doc/install/install-keepproxy.html.textile.liquid | 1 +
...nstall-manual-prerequisites.html.textile.liquid | 4 +-
.../install-nodemanager.html.textile.liquid | 629 ---------------
doc/sdk/python/cookbook.html.textile.liquid | 7 +-
lib/config/config.default.yml | 6 +-
lib/config/deprecated.go | 1 -
lib/config/export.go | 47 +-
lib/config/generated_config.go | 6 +-
lib/controller/federation/generated.go | 3 +
lib/controller/federation/list.go | 5 +-
lib/controller/handler.go | 2 +-
lib/controller/integration_test.go | 1 +
lib/controller/router/router_test.go | 2 +-
lib/controller/rpc/conn_test.go | 4 +
lib/dispatchcloud/scheduler/run_queue_test.go | 4 +-
lib/dispatchcloud/scheduler/sync.go | 6 +-
lib/dispatchcloud/scheduler/sync_test.go | 62 ++
lib/dispatchcloud/worker/pool_test.go | 57 +-
lib/service/cmd_test.go | 1 +
sdk/cli/arvados-cli.gemspec | 7 +-
sdk/go/arvados/api.go | 1 +
sdk/go/arvados/config.go | 4 +-
sdk/go/arvados/duration_test.go | 1 +
sdk/go/arvados/fs_base.go | 27 +-
sdk/go/arvados/fs_collection.go | 56 ++
sdk/go/arvados/fs_collection_test.go | 22 +-
sdk/go/arvados/fs_deferred.go | 21 +-
sdk/go/arvados/fs_lookup.go | 58 +-
sdk/go/arvados/fs_project.go | 3 +-
sdk/go/arvados/fs_project_test.go | 43 +-
sdk/go/arvados/fs_site.go | 41 +-
sdk/go/arvados/fs_site_test.go | 13 +-
sdk/go/arvadosclient/arvadosclient_test.go | 5 +
sdk/go/health/aggregator_test.go | 1 -
sdk/go/httpserver/logger_test.go | 4 +
sdk/go/keepclient/keepclient_test.go | 23 +
sdk/pam/.dockerignore | 10 -
sdk/pam/.gitignore | 1 -
sdk/pam/Dockerfile | 56 --
sdk/pam/LICENSE-2.0.txt | 202 -----
sdk/pam/MANIFEST.in | 10 -
sdk/pam/README.rst | 25 -
sdk/pam/arvados_pam/__init__.py | 55 --
sdk/pam/arvados_pam/auth_event.py | 92 ---
sdk/pam/arvados_version.py | 36 -
sdk/pam/examples/shellinabox | 27 -
sdk/pam/fpm-info.sh | 22 -
sdk/pam/gittaggers.py | 1 -
sdk/pam/integration_tests/__init__.py | 0
sdk/pam/integration_tests/test_pam.py | 30 -
sdk/pam/lib/libpam_arvados.py | 7 -
sdk/pam/pam-configs/arvados | 14 -
sdk/pam/setup.py | 57 --
sdk/pam/tests/__init__.py | 0
sdk/pam/tests/integration_test.pl | 49 --
sdk/pam/tests/mocker.py | 63 --
sdk/pam/tests/test_auth_event.py | 99 ---
sdk/pam/tests/test_pam_sm.py | 30 -
sdk/python/tests/fed-migrate/check.py | 61 ++
services/api/.gitignore | 3 +-
services/api/Gemfile | 7 +-
services/api/Gemfile.lock | 138 ++--
.../api/app/controllers/application_controller.rb | 3 +-
.../api/app/models/api_client_authorization.rb | 3 +-
services/api/app/models/arvados_model.rb | 41 +-
services/api/app/models/collection.rb | 17 +-
services/api/app/models/container.rb | 12 +-
services/api/app/models/container_request.rb | 4 +-
services/api/app/models/group.rb | 4 +-
services/api/app/models/link.rb | 27 +
services/api/app/models/node.rb | 8 +-
services/api/app/models/user.rb | 48 +-
services/api/bin/bundle | 2 +-
services/api/bin/setup | 3 +-
services/api/bin/update | 3 +-
services/api/bin/yarn | 16 +
services/api/config/application.rb | 7 +-
services/api/config/boot.rb | 3 +-
.../api/config/environments/development.rb.example | 2 +-
.../api/config/environments/production.rb.example | 2 +-
services/api/config/environments/test.rb.example | 2 +-
.../config/initializers/content_security_policy.rb | 29 +
.../api/config/initializers/legacy_jobs_api.rb | 11 +-
.../initializers/new_framework_defaults_5_2.rb | 42 +
.../api/config/initializers/preload_all_models.rb | 15 -
services/api/config/initializers/time_zone.rb | 4 +-
.../api/config/initializers/wrap_parameters.rb | 2 +-
services/api/config/routes.rb | 2 +-
services/api/config/secrets.yml | 31 +
services/api/lib/audit_logs.rb | 7 +-
services/api/lib/sweep_trashed_objects.rb | 7 +-
services/api/lib/update_priority.rb | 9 +-
.../arvados/v1/keep_services_controller_test.rb | 3 +-
services/api/test/unit/arvados_model_test.rb | 25 +
services/api/test/unit/link_test.rb | 8 +
services/api/test/unit/log_test.rb | 13 -
services/api/test/unit/node_test.rb | 2 +-
services/keep-balance/main_test.go | 1 +
services/keep-web/handler.go | 43 +-
services/keep-web/main.go | 3 +-
services/keep-web/s3.go | 404 ++++++++++
services/keep-web/s3_test.go | 546 +++++++++++++
services/keep-web/server.go | 6 +-
services/keep-web/server_test.go | 2 +-
services/keep/tools/traffic_test.py | 129 ----
services/keepstore/s3aws_volume_test.go | 3 +
services/nodemanager/.gitignore | 1 -
services/nodemanager/MANIFEST.in | 8 -
services/nodemanager/README.rst | 43 --
services/nodemanager/agpl-3.0.txt | 661 ----------------
services/nodemanager/arvados-node-manager.service | 32 -
services/nodemanager/arvados_version.py | 51 --
services/nodemanager/arvnodeman/__init__.py | 12 -
services/nodemanager/arvnodeman/baseactor.py | 129 ----
services/nodemanager/arvnodeman/clientactor.py | 116 ---
.../nodemanager/arvnodeman/computenode/__init__.py | 201 -----
.../arvnodeman/computenode/dispatch/__init__.py | 536 -------------
.../arvnodeman/computenode/dispatch/slurm.py | 118 ---
.../arvnodeman/computenode/dispatch/transitions.py | 69 --
.../arvnodeman/computenode/driver/__init__.py | 253 ------
.../arvnodeman/computenode/driver/azure.py | 112 ---
.../arvnodeman/computenode/driver/dummy.py | 61 --
.../arvnodeman/computenode/driver/ec2.py | 129 ----
.../arvnodeman/computenode/driver/gce.py | 181 -----
services/nodemanager/arvnodeman/config.py | 184 -----
services/nodemanager/arvnodeman/daemon.py | 583 --------------
services/nodemanager/arvnodeman/jobqueue.py | 255 ------
services/nodemanager/arvnodeman/launcher.py | 171 ----
services/nodemanager/arvnodeman/nodelist.py | 87 ---
services/nodemanager/arvnodeman/status.py | 129 ----
services/nodemanager/arvnodeman/test/__init__.py | 5 -
.../nodemanager/arvnodeman/test/fake_driver.py | 226 ------
services/nodemanager/arvnodeman/timedcallback.py | 49 --
services/nodemanager/bin/arvados-node-manager | 9 -
services/nodemanager/doc/azure.example.cfg | 202 -----
services/nodemanager/doc/ec2.example.cfg | 205 -----
services/nodemanager/doc/gce.example.cfg | 187 -----
services/nodemanager/doc/local.example.cfg | 50 --
services/nodemanager/fpm-info.sh | 9 -
services/nodemanager/gittaggers.py | 1 -
services/nodemanager/setup.py | 60 --
services/nodemanager/tests/__init__.py | 18 -
services/nodemanager/tests/fake_azure.cfg.template | 194 -----
services/nodemanager/tests/fake_ec2.cfg.template | 162 ----
services/nodemanager/tests/fake_gce.cfg.template | 159 ----
services/nodemanager/tests/integration_test.py | 494 ------------
services/nodemanager/tests/stress_test.cwl | 51 --
services/nodemanager/tests/test_arguments.py | 30 -
services/nodemanager/tests/test_clientactor.py | 152 ----
services/nodemanager/tests/test_computenode.py | 45 --
.../nodemanager/tests/test_computenode_dispatch.py | 562 --------------
.../tests/test_computenode_dispatch_slurm.py | 155 ----
.../nodemanager/tests/test_computenode_driver.py | 113 ---
.../tests/test_computenode_driver_azure.py | 145 ----
.../tests/test_computenode_driver_ec2.py | 175 -----
.../tests/test_computenode_driver_gce.py | 252 ------
services/nodemanager/tests/test_config.py | 110 ---
services/nodemanager/tests/test_daemon.py | 858 ---------------------
services/nodemanager/tests/test_failure.py | 69 --
services/nodemanager/tests/test_jobqueue.py | 239 ------
services/nodemanager/tests/test_nodelist.py | 106 ---
services/nodemanager/tests/test_status.py | 139 ----
services/nodemanager/tests/test_timedcallback.py | 65 --
services/nodemanager/tests/testutil.py | 236 ------
tools/arvbox/bin/arvbox | 3 +-
.../crunchstat_summary/summarizer.py | 2 +-
203 files changed, 1974 insertions(+), 11878 deletions(-)
copy build/package-testing/{test-package-python27-python-arvados-cwl-runner.sh => test-package-arvados-docker-cleaner.sh} (75%)
delete mode 100755 build/package-testing/test-package-arvados-node-manager.sh
delete mode 120000 build/package-testing/test-package-python-arvados-cwl-runner.sh
delete mode 120000 build/package-testing/test-package-python-arvados-fuse.sh
delete mode 120000 build/package-testing/test-package-python-arvados-python-client.sh
delete mode 120000 build/package-testing/test-package-python-cwltest.sh
delete mode 100755 build/package-testing/test-package-python27-python-arvados-python-client.sh
rename build/package-testing/{test-package-python27-python-cwltest.sh => test-package-python3-crunchstat-summary.sh} (72%)
copy build/package-testing/{test-package-python27-python-arvados-cwl-runner.sh => test-package-python3-cwltest.sh} (79%)
mode change 120000 => 100755 build/package-testing/test-package-python3-python-arvados-fuse.sh
rename build/package-testing/{test-package-python27-python-arvados-cwl-runner.sh => test-package-rh-python36-python-arvados-cwl-runner.sh} (74%)
copy build/package-testing/{test-package-python27-python-arvados-fuse.sh => test-package-rh-python36-python-arvados-fuse.sh} (100%)
copy build/package-testing/{test-package-python27-python-arvados-fuse.sh => test-package-rh-python36-python-crunchstat-summary.sh} (77%)
rename build/package-testing/{test-package-python27-python-arvados-fuse.sh => test-package-rh-python36-python-cwltest.sh} (83%)
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delete mode 100644 services/api/config/initializers/preload_all_models.rb
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delete mode 100644 services/nodemanager/arvnodeman/computenode/driver/__init__.py
delete mode 100644 services/nodemanager/arvnodeman/computenode/driver/azure.py
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commit ee908b109a95ea962425b435a8a317231829b115
Merge: 91ce66442 c8f84a3c4
Author: Ward Vandewege <ward at curii.com>
Date: Thu Aug 20 10:28:09 2020 -0400
16625: Merge branch 'master' into 16625-add-azure-managed-image-support
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward at curii.com>
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