[ARVADOS] updated: 1.3.0-2424-gc0a9b9a32
Git user
git at public.arvados.org
Tue Apr 7 14:05:55 UTC 2020
Summary of changes:
apps/workbench/Gemfile.lock | 8 +-
.../config/initializers/actionview_xss_fix.rb | 32 +++
.../test/unit/helpers/javascript_helper_test.rb | 17 ++
build/build-dev-docker-jobs-image.sh | 13 +-
build/run-build-packages.sh | 9 +-
build/run-tests.sh | 6 +-
lib/boot/postgresql.go | 2 +-
lib/boot/supervisor.go | 19 +-
lib/install/deps.go | 8 +-
sdk/cwl/arvados_cwl/__init__.py | 37 ---
sdk/cwl/arvados_cwl/arvworkflow.py | 29 +-
sdk/cwl/arvados_cwl/runner.py | 5 +-
sdk/cwl/setup.py | 11 +-
sdk/cwl/test_with_arvbox.sh | 26 +-
sdk/cwl/tests/test_container.py | 15 +-
sdk/cwl/tests/test_submit.py | 3 +-
sdk/cwl/tests/wf/scatter2_subwf.cwl | 15 +-
.../arvados/client/api/client/LinksApiClient.java | 36 +++
.../java/org/arvados/client/api/model/Link.java | 62 +++++
.../api/model/{UserList.java => LinkList.java} | 8 +-
sdk/python/arvados/commands/arv_copy.py | 294 +--------------------
sdk/python/setup.py | 2 +-
sdk/python/tests/run_test_server.py | 1 +
services/api/Gemfile.lock | 4 +-
24 files changed, 266 insertions(+), 396 deletions(-)
create mode 100644 apps/workbench/config/initializers/actionview_xss_fix.rb
create mode 100644 apps/workbench/test/unit/helpers/javascript_helper_test.rb
create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/LinksApiClient.java
create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/Link.java
copy sdk/java-v2/src/main/java/org/arvados/client/api/model/{UserList.java => LinkList.java} (80%)
via c0a9b9a3291e14c75711d5849dc5365e2166fccd (commit)
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from 9e48b679541d2651e2519c7566e975049c00660c (commit)
Those revisions listed above that are new to this repository have
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commit c0a9b9a3291e14c75711d5849dc5365e2166fccd
Merge: 53da7a1e2 cd04b8ba0
Author: Tom Clegg <tom at tomclegg.ca>
Date: Tue Mar 31 13:52:23 2020 -0400
16053: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at tomclegg.ca>
commit 53da7a1e224a95d8e68209204285f3fc227d84c8
Author: Tom Clegg <tom at tomclegg.ca>
Date: Tue Mar 31 13:51:31 2020 -0400
16053: Error out on unimplemented install in production mode.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at tomclegg.ca>
diff --git a/lib/install/deps.go b/lib/install/deps.go
index 5496be81a..cbcf7438b 100644
--- a/lib/install/deps.go
+++ b/lib/install/deps.go
@@ -8,6 +8,7 @@ import (
"bufio"
"bytes"
"context"
+ "errors"
"flag"
"fmt"
"io"
@@ -65,10 +66,15 @@ func (installCommand) RunCommand(prog string, args []string, stdin io.Reader, st
case "production":
prod = true
default:
- err = fmt.Errorf("cluster type must be 'development', 'test', or 'production'")
+ err = fmt.Errorf("invalid cluster type %q (must be 'development', 'test', or 'production')", *clusterType)
return 2
}
+ if prod {
+ err = errors.New("production install is not yet implemented")
+ return 1
+ }
+
osv, err := identifyOS()
if err != nil {
return 1
commit 792e8c699056676a48475724c12fe3cf92e7d805
Author: Tom Clegg <tom at tomclegg.ca>
Date: Wed Mar 25 14:57:42 2020 -0400
16053: Specify utf8 encoding when creating databases.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom at tomclegg.ca>
diff --git a/lib/boot/postgresql.go b/lib/boot/postgresql.go
index df90f36af..34ccf04a8 100644
--- a/lib/boot/postgresql.go
+++ b/lib/boot/postgresql.go
@@ -154,7 +154,7 @@ func (runPostgreSQL) Run(ctx context.Context, fail func(error), super *Superviso
if err != nil {
return fmt.Errorf("createuser failed: %s", err)
}
- _, err = conn.ExecContext(ctx, `CREATE DATABASE `+pq.QuoteIdentifier(super.cluster.PostgreSQL.Connection["dbname"]))
+ _, err = conn.ExecContext(ctx, `CREATE DATABASE `+pq.QuoteIdentifier(super.cluster.PostgreSQL.Connection["dbname"])+` WITH TEMPLATE template0 ENCODING 'utf8'`)
if err != nil {
return fmt.Errorf("createdb failed: %s", err)
}
diff --git a/sdk/python/tests/run_test_server.py b/sdk/python/tests/run_test_server.py
index f5ee9c383..4f4d13858 100644
--- a/sdk/python/tests/run_test_server.py
+++ b/sdk/python/tests/run_test_server.py
@@ -675,6 +675,7 @@ def setup_config():
"dbname": "arvados_test",
"user": "arvados",
"password": "insecure_arvados_test",
+ "template": "template0", # used by RailsAPI when [re]creating the database
}
localhost = "127.0.0.1"
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