[ARVADOS] updated: 1.3.0-413-gb16f84a8c
Git user
git at public.curoverse.com
Fri Mar 1 09:29:42 EST 2019
Summary of changes:
apps/workbench/.gitignore | 3 +
apps/workbench/app/views/layouts/body.html.erb | 15 +
apps/workbench/config/application.default.yml | 8 +
.../config/initializers/validate_wb2_url_config.rb | 5 +-
apps/workbench/lib/config_validators.rb | 28 ++
apps/workbench/package-build.version | 1 -
.../test/integration/application_layout_test.rb | 24 ++
apps/workbench/test/the.patch | 3 -
build/package-build-dockerfiles/centos7/Dockerfile | 6 +-
build/package-build-dockerfiles/debian8/Dockerfile | 5 +-
build/package-build-dockerfiles/debian9/Dockerfile | 5 +-
.../ubuntu1404/Dockerfile | 5 +-
.../ubuntu1604/Dockerfile | 5 +-
.../ubuntu1804/Dockerfile | 3 -
build/run-build-packages-python-and-ruby.sh | 3 -
build/run-build-packages.sh | 17 +-
build/run-library.sh | 50 ++--
build/run-tests.sh | 3 +-
...loud.service => arvados-dispatch-cloud.service} | 4 +-
doc/_includes/_install_compute_docker.liquid | 2 +-
...nstall-manual-prerequisites.html.textile.liquid | 4 +-
doc/user/topics/arv-docker.html.textile.liquid | 2 +-
lib/cloud/{ => azure}/azure.go | 308 +++++++++------------
lib/cloud/{ => azure}/azure_test.go | 152 +++++-----
lib/cloud/gocheck_test.go | 16 --
lib/cloud/interfaces.go | 34 ++-
lib/controller/cmd.go | 4 +-
lib/controller/federation_test.go | 31 ++-
lib/controller/handler.go | 2 -
lib/controller/handler_test.go | 12 +-
lib/controller/server_test.go | 18 +-
lib/dispatchcloud/cmd.go | 6 +-
lib/dispatchcloud/container/queue.go | 48 +++-
lib/dispatchcloud/dispatcher.go | 24 +-
lib/dispatchcloud/dispatcher_test.go | 16 +-
lib/dispatchcloud/driver.go | 3 +-
lib/dispatchcloud/node_size.go | 2 +-
lib/dispatchcloud/scheduler/fix_stale_locks.go | 46 +--
lib/dispatchcloud/scheduler/run_queue.go | 85 +++---
lib/dispatchcloud/scheduler/run_queue_test.go | 11 +-
lib/dispatchcloud/scheduler/scheduler.go | 20 +-
lib/dispatchcloud/scheduler/sync.go | 84 +++---
lib/dispatchcloud/ssh_executor/executor.go | 6 +-
lib/dispatchcloud/ssh_executor/executor_test.go | 2 +
lib/dispatchcloud/test/logger.go | 19 --
lib/dispatchcloud/test/ssh_service.go | 8 +-
lib/dispatchcloud/test/stub_driver.go | 42 ++-
lib/dispatchcloud/worker/pool.go | 161 ++++++-----
lib/dispatchcloud/worker/pool_test.go | 9 +-
lib/dispatchcloud/worker/verify.go | 56 ++++
lib/dispatchcloud/worker/worker.go | 51 ++--
lib/dispatchcloud/worker/worker_test.go | 5 +-
lib/service/cmd.go | 16 +-
sdk/cli/arvados-cli.gemspec | 2 +-
sdk/cwl/arvados_cwl/__init__.py | 6 +-
sdk/cwl/arvados_cwl/arvcontainer.py | 17 +-
sdk/cwl/arvados_cwl/arvdocker.py | 1 +
sdk/cwl/arvados_cwl/arvjob.py | 10 +-
sdk/cwl/arvados_cwl/executor.py | 18 +-
sdk/cwl/arvados_cwl/fsaccess.py | 4 +-
sdk/cwl/arvados_cwl/http.py | 2 +-
sdk/cwl/arvados_cwl/runner.py | 12 +-
sdk/cwl/setup.py | 6 +-
sdk/cwl/tests/test_http.py | 6 +-
sdk/cwl/tests/test_submit.py | 16 +-
sdk/go/arvados/config.go | 19 +-
sdk/go/arvados/duration.go | 10 +-
sdk/go/ctxlog/log.go | 68 ++++-
.../src/main/java/org/arvados/sdk/Arvados.java | 1 -
sdk/python/arvados/_normalize_stream.py | 6 +-
sdk/python/arvados/collection.py | 16 +-
sdk/python/arvados/commands/keepdocker.py | 7 +-
sdk/python/arvados/commands/put.py | 18 +-
sdk/python/setup.py | 4 +-
sdk/python/tests/test_arv_put.py | 12 +
services/api/.gitignore | 3 +
.../api/app/models/api_client_authorization.rb | 6 +
services/api/app/models/collection.rb | 1 +
services/api/app/models/container.rb | 18 +-
services/api/config/application.default.yml | 4 +
.../20190214214814_add_container_lock_count.rb | 5 +
services/api/db/structure.sql | 5 +-
.../arvados/v1/collections_controller_test.rb | 25 +-
services/api/test/unit/container_test.rb | 54 ++++
services/crunch-run/background.go | 77 ++----
services/crunch-run/crunchrun.go | 26 ++
services/keepstore/azure_blob_volume.go | 3 +
services/keepstore/handler_test.go | 18 ++
services/keepstore/handlers.go | 8 +-
services/keepstore/keepstore.go | 1 +
services/keepstore/keepstore_test.go | 2 +
services/keepstore/volume_test.go | 11 +-
services/login-sync/arvados-login-sync.gemspec | 2 +-
services/ws/session_v0.go | 2 +-
.../arvbox/docker/service/workbench/run-service | 1 +
vendor/vendor.json | 6 -
96 files changed, 1261 insertions(+), 776 deletions(-)
copy build/package-testing/test-package-python27-python-arvados-cwl-runner.sh => apps/workbench/config/initializers/validate_wb2_url_config.rb (59%)
mode change 100755 => 100644
create mode 100644 apps/workbench/lib/config_validators.rb
delete mode 100644 apps/workbench/package-build.version
delete mode 100644 apps/workbench/test/the.patch
rename cmd/arvados-server/{crunch-dispatch-cloud.service => arvados-dispatch-cloud.service} (89%)
rename lib/cloud/{ => azure}/azure.go (64%)
rename lib/cloud/{ => azure}/azure_test.go (62%)
delete mode 100644 lib/cloud/gocheck_test.go
delete mode 100644 lib/dispatchcloud/test/logger.go
create mode 100644 lib/dispatchcloud/worker/verify.go
create mode 100644 services/api/db/migrate/20190214214814_add_container_lock_count.rb
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commit b16f84a8c5562cd5c3939e8c445dc86df2be2d4b
Merge: dd969e81d e231fef37
Author: Ward Vandewege <wvandewege at veritasgenetics.com>
Date: Fri Mar 1 09:29:16 2019 -0500
14819: Merge branch 'master' into 14819-arvados-jobs-on-stretch
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege at veritasgenetics.com>
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