[ARVADOS] updated: 1.3.0-1167-gb629d9e88
Git user
git at public.curoverse.com
Wed Jun 26 15:39:12 UTC 2019
Summary of changes:
.../app/assets/javascripts/components/edit_tags.js | 51 ++++++++++++-
.../app/views/projects/_container_summary.html.erb | 42 +++++++++++
.../app/views/projects/_show_dashboard.html.erb | 10 +++
build/run-tests.sh | 43 ++++++-----
doc/_config.yml | 4 +-
...min_list_collections_without_property_py.liquid | 15 ++++
...property_to_collections_under_project_py.liquid | 36 +++++++++
.../_admin_update_collection_property_py.liquid | 22 ++++++
doc/_includes/_install_compute_docker.liquid | 2 +-
doc/_includes/_install_postgres_database.liquid | 31 +++++---
doc/_includes/_mount_types.liquid | 2 +-
doc/_includes/_navbar_top.liquid | 2 +-
...llection-managed-properties.html.textile.liquid | 85 ++++++++++++++++++++++
doc/admin/upgrading.html.textile.liquid | 31 +++++++-
doc/install/install-postgresql.html.textile.liquid | 8 +-
doc/sdk/index.html.textile.liquid | 2 +-
.../collection-versioning.html.textile.liquid | 2 +-
lib/config/config.default.yml | 14 ++++
lib/config/export.go | 3 +
lib/config/generated_config.go | 14 ++++
lib/controller/federation.go | 2 +-
lib/dispatchcloud/dispatcher.go | 19 ++++-
lib/dispatchcloud/dispatcher_test.go | 14 ++++
lib/dispatchcloud/driver.go | 70 +++++++++++++++++-
lib/dispatchcloud/scheduler/interfaces.go | 3 +-
lib/dispatchcloud/scheduler/run_queue_test.go | 5 +-
lib/dispatchcloud/scheduler/sync.go | 1 +
lib/dispatchcloud/worker/pool.go | 49 ++++++++++---
sdk/cwl/arvados_cwl/executor.py | 15 ++--
sdk/cwl/arvados_cwl/pathmapper.py | 20 +++--
sdk/cwl/arvados_cwl/runner.py | 5 +-
...13976-keepref-wf.cwl => 15295-bad-keep-ref.cwl} | 7 +-
sdk/cwl/tests/arvados-tests.yml | 6 ++
sdk/cwl/tests/badkeep.yml | 3 +
sdk/go/arvados/config.go | 7 +-
.../src/main/java/org/arvados/sdk/Arvados.java | 2 +-
.../arvados/v1/containers_controller.rb | 3 +-
services/api/app/models/arvados_model.rb | 24 ++++++
services/api/app/models/collection.rb | 38 ++++++++++
services/api/app/models/container.rb | 61 ++++++++--------
...0523180148_add_trigram_index_for_text_search.rb | 44 +++++++++++
services/api/db/structure.sql | 67 ++++++++++++++++-
services/api/lib/record_filters.rb | 8 ++
services/api/test/fixtures/containers.yml | 1 +
.../arvados/v1/containers_controller_test.rb | 2 +-
services/api/test/unit/arvados_model_test.rb | 24 ++++++
services/api/test/unit/collection_test.rb | 61 ++++++++++++++++
services/fuse/arvados_fuse/__init__.py | 2 +-
services/keep-balance/balance_test.go | 3 +-
tools/arvbox/bin/arvbox | 6 ++
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 2 +-
tools/arvbox/lib/arvbox/docker/api-setup.sh | 2 +-
.../lib/arvbox/docker/runit-docker/runit-docker.c | 2 +-
53 files changed, 874 insertions(+), 123 deletions(-)
create mode 100644 apps/workbench/app/views/projects/_container_summary.html.erb
create mode 100644 doc/_includes/_admin_list_collections_without_property_py.liquid
create mode 100644 doc/_includes/_admin_set_property_to_collections_under_project_py.liquid
create mode 100644 doc/_includes/_admin_update_collection_property_py.liquid
create mode 100644 doc/admin/collection-managed-properties.html.textile.liquid
copy sdk/cwl/tests/{13976-keepref-wf.cwl => 15295-bad-keep-ref.cwl} (54%)
create mode 100644 sdk/cwl/tests/badkeep.yml
create mode 100644 services/api/db/migrate/20190523180148_add_trigram_index_for_text_search.rb
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commit b629d9e88ad0c6e62018a8fb4768013975eccc70
Merge: 72b1b3b28 7eb7c12b0
Author: Eric Biagiotti <ebiagiotti at veritasgenetics.com>
Date: Wed Jun 26 11:39:04 2019 -0400
Merge remote-tracking branch 'origin/master' into 14965-arv-mount-py-three
refs #14965
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti at veritasgenetics.com>
commit 72b1b3b28fb13528a8c6ea5b8ee5ac62d69be28d
Author: Eric Biagiotti <ebiagiotti at veritasgenetics.com>
Date: Wed Jun 26 11:38:48 2019 -0400
14965: Fixes read operation encoding
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti at veritasgenetics.com>
diff --git a/services/fuse/arvados_fuse/__init__.py b/services/fuse/arvados_fuse/__init__.py
index 76bba952a..4916b7cae 100644
--- a/services/fuse/arvados_fuse/__init__.py
+++ b/services/fuse/arvados_fuse/__init__.py
@@ -662,7 +662,7 @@ class Operations(llfuse.Operations):
r = handle.obj.readfrom(off, size, self.num_retries)
if r:
self.read_counter.add(len(r))
- return r
+ return r.encode('utf-8')
@write_time.time()
@catch_exceptions
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