[ARVADOS] updated: 1.3.0-969-ga8fe18b2b
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git at public.curoverse.com
Wed Jun 5 17:55:58 UTC 2019
Summary of changes:
sdk/cli/bin/crunch-job | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
via a8fe18b2b941f31896033bb58b9056e7731581b7 (commit)
from 390c01992d568d3f0de5e3537db93592de9947d9 (commit)
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commit a8fe18b2b941f31896033bb58b9056e7731581b7
Author: Ward Vandewege <wvandewege at veritasgenetics.com>
Date: Wed Jun 5 12:49:27 2019 -0400
Crunch-job needs to call the python executable from our sdk package for
collating job output.
refs #9945
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege at veritasgenetics.com>
diff --git a/sdk/cli/bin/crunch-job b/sdk/cli/bin/crunch-job
index b98df8a66..242dff708 100755
--- a/sdk/cli/bin/crunch-job
+++ b/sdk/cli/bin/crunch-job
@@ -1634,7 +1634,9 @@ sub create_output_collection
Log (undef, "collate");
my ($child_out, $child_in);
- my $pid = open2($child_out, $child_in, 'python', '-c', q{
+ # This depends on the python-arvados-python-client package, which needs to be installed
+ # on the machine running crunch-dispatch (typically, the API server).
+ my $pid = open2($child_out, $child_in, '/usr/share/python2.7/dist/python-arvados-python-client/bin/python', '-c', q{
import arvados
import sys
print (arvados.api("v1").collections().
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