[ARVADOS] updated: 1.3.0-1017-g6c78b28f9

[Git user]

Summary of changes:
 build/build-dev-docker-jobs-image.sh               |   8 +-
 sdk/cwl/arvados_cwl/__init__.py                    |  21 +-
 ...{arv-cwl-schema.yml => arv-cwl-schema-v1.0.yml} |   0
 ...{arv-cwl-schema.yml => arv-cwl-schema-v1.1.yml} |  56 -----
 sdk/cwl/arvados_cwl/arvcontainer.py                |  12 +-
 sdk/cwl/arvados_cwl/arvjob.py                      |   7 +-
 sdk/cwl/arvados_cwl/arvtool.py                     |  26 +-
 sdk/cwl/arvados_cwl/arvworkflow.py                 |  13 +-
 sdk/cwl/arvados_cwl/done.py                        |   2 +-
 sdk/cwl/arvados_cwl/executor.py                    |  72 ++++--
 sdk/cwl/arvados_cwl/runner.py                      | 180 ++++++++++++--
 sdk/cwl/setup.py                                   |   6 +-
 sdk/cwl/test_with_arvbox.sh                        |  35 ++-
 sdk/cwl/tests/test_container.py                    | 264 ++++++++++++++++++++-
 sdk/cwl/tests/test_job.py                          |  49 ++--
 sdk/cwl/tests/test_submit.py                       |  31 ++-
 sdk/cwl/tests/wf/scatter2_subwf.cwl                |  12 +-
 sdk/dev-jobs.dockerfile                            |  17 +-
 18 files changed, 615 insertions(+), 196 deletions(-)
 copy sdk/cwl/arvados_cwl/{arv-cwl-schema.yml => arv-cwl-schema-v1.0.yml} (100%)
 rename sdk/cwl/arvados_cwl/{arv-cwl-schema.yml => arv-cwl-schema-v1.1.yml} (80%)

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       via  9e27319d4ec960e6fac43322b885e8aa355651f9 (commit)
       via  f27aa12c4dd863e1c4a8c0c61cba365c99bdc5e7 (commit)
       via  e824e159b213262403771ca4060ac03a7d558b55 (commit)
       via  eb52e0cd0b7e6e7c479fec820b3c19566984c79c (commit)
       via  472090e584f8ce68c97e082aba08c79f2a242848 (commit)
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       via  14db4dcdc2b0b7e5fbc81d62cf581dea5ccc07f4 (commit)
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       via  9e265731cf581ffb3650fd9db1aa0347650e2128 (commit)
       via  3954f59491891999e117fe1b56d073d628775e5e (commit)
       via  8a3e48d792f1b9f3ba12cefee4c0cdb50d85c847 (commit)
       via  09fcc3cf5ba690aa75c36dfef911c730f48f05ab (commit)
       via  ac0dc6c57a2b4f736b6faf62421de56a3355db04 (commit)
      from  fdadf2969c54edc7314ca50a629f3912998087b4 (commit)

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commit 6c78b28f9f54664babc57a4b4372c502065ed5d1
Merge: fdadf2969 903b27b2f
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date:   Tue Jun 4 13:20:24 2019 -0400

    Merge branch '15028-cwl-v1.1' refs #15028
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>


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