[ARVADOS] created: 1.3.0-1380-g349fa72a9

[Git user]

        at  349fa72a94f2ccaa2a81203b1d5e30511e080303 (commit)


commit 349fa72a94f2ccaa2a81203b1d5e30511e080303
Author: Tom Morris <tfmorris at veritasgenetics.com>
Date:   Thu Jul 25 17:01:40 2019 -0400

    Fix so it works with Arvados v1.4+
    
    Arvados v1.4 changed things so that container logs are no longer
    accessible via PDH so we need to go to the container request and
    access the log via UUID from there.
    
    Arvados-DCO-1.1-Signed-off-by: Tom Morris <tfmorris at veritasgenetics.com>

diff --git a/tools/crunchstat-summary/crunchstat_summary/command.py b/tools/crunchstat-summary/crunchstat_summary/command.py
index aadc77582..799fd2b81 100644
--- a/tools/crunchstat-summary/crunchstat_summary/command.py
+++ b/tools/crunchstat-summary/crunchstat_summary/command.py
@@ -17,14 +17,20 @@ class ArgumentParser(argparse.ArgumentParser):
             description='Summarize resource usage of an Arvados Crunch job')
         src = self.add_mutually_exclusive_group()
         src.add_argument(
-            '--job', '--container', '--container-request',
+            '--job', '--container-request',
             type=str, metavar='UUID',
-            help='Look up the specified job, container, or container request '
+            help='Look up the specified job or container request '
+            'and read its log data from Keep (or from the Arvados event log, '
+            'if the job is still running)')
+        src.add_argument(
+            '--container',
+            type=str, metavar='UUID',
+            help='[Deprecated] Look up the specified container find its container request '
             'and read its log data from Keep (or from the Arvados event log, '
             'if the job is still running)')
         src.add_argument(
             '--pipeline-instance', type=str, metavar='UUID',
-            help='Summarize each component of the given pipeline instance')
+            help='[Deprecated] Summarize each component of the given pipeline instance (historical pre-1.4)')
         src.add_argument(
             '--log-file', type=str,
             help='Read log data from a regular file')
diff --git a/tools/crunchstat-summary/crunchstat_summary/summarizer.py b/tools/crunchstat-summary/crunchstat_summary/summarizer.py
index e962ced31..0ed9419ab 100644
--- a/tools/crunchstat-summary/crunchstat_summary/summarizer.py
+++ b/tools/crunchstat-summary/crunchstat_summary/summarizer.py
@@ -501,12 +501,13 @@ def NewSummarizer(process_or_uuid, **kwargs):
 
     if '-dz642-' in uuid:
         if process is None:
-            process = arv.containers().get(uuid=uuid).execute()
-        klass = ContainerTreeSummarizer
+            # Get the associated CR. Doesn't matter which since they all have the same logs
+            process = arv.container_requests().list(filters=[['container_uuid','=',uuid]],limit=1).execute()['items'][0]
+        klass = ContainerRequestTreeSummarizer
     elif '-xvhdp-' in uuid:
         if process is None:
             process = arv.container_requests().get(uuid=uuid).execute()
-        klass = ContainerTreeSummarizer
+        klass = ContainerRequestTreeSummarizer
     elif '-8i9sb-' in uuid:
         if process is None:
             process = arv.jobs().get(uuid=uuid).execute()
@@ -530,9 +531,14 @@ class ProcessSummarizer(Summarizer):
         self.process = process
         if label is None:
             label = self.process.get('name', self.process['uuid'])
-        if self.process.get('log'):
+        # Pre-Arvados v1.4 everything is in 'log'
+        # For 1.4+ containers have no logs and container_requests have them in 'log_uuid', not 'log'
+        log_collection = self.process.get('log')
+        if not log_collection:
+            log_collection = self.process.get('log_uuid')
+        if log_collection:
             try:
-                rdr = crunchstat_summary.reader.CollectionReader(self.process['log'])
+                rdr = crunchstat_summary.reader.CollectionReader(log_collection)
             except arvados.errors.NotFoundError as e:
                 logger.warning("Trying event logs after failing to read "
                                "log collection %s: %s", self.process['log'], e)
@@ -653,7 +659,7 @@ class PipelineSummarizer(MultiSummarizer):
             **kwargs)
 
 
-class ContainerTreeSummarizer(MultiSummarizer):
+class ContainerRequestTreeSummarizer(MultiSummarizer):
     def __init__(self, root, skip_child_jobs=False, **kwargs):
         arv = arvados.api('v1', model=OrderedJsonModel())
 
@@ -666,8 +672,6 @@ class ContainerTreeSummarizer(MultiSummarizer):
             current = todo.popleft()
             label = current['name']
             sort_key = current['created_at']
-            if current['uuid'].find('-xvhdp-') > 0:
-                current = arv.containers().get(uuid=current['container_uuid']).execute()
 
             summer = ContainerSummarizer(current, label=label, **kwargs)
             summer.sort_key = sort_key
@@ -678,7 +682,7 @@ class ContainerTreeSummarizer(MultiSummarizer):
                 child_crs = arv.container_requests().index(
                     order=['uuid asc'],
                     filters=page_filters+[
-                        ['requesting_container_uuid', '=', current['uuid']]],
+                        ['requesting_container_uuid', '=', current['container_uuid']]],
                 ).execute()
                 if not child_crs['items']:
                     break
@@ -696,7 +700,7 @@ class ContainerTreeSummarizer(MultiSummarizer):
         sorted_children = collections.OrderedDict()
         for uuid in sorted(list(children.keys()), key=lambda uuid: children[uuid].sort_key):
             sorted_children[uuid] = children[uuid]
-        super(ContainerTreeSummarizer, self).__init__(
+        super(ContainerRequestTreeSummarizer, self).__init__(
             children=sorted_children,
             label=root['name'],
             **kwargs)

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hooks/post-receive
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