[ARVADOS] updated: 1.3.0-1289-gb3a016e9a
Git user
git at public.curoverse.com
Thu Jul 11 15:14:13 UTC 2019
Summary of changes:
.../app/controllers/actions_controller.rb | 2 +-
.../app/controllers/application_controller.rb | 18 +-
.../app/controllers/collections_controller.rb | 35 ++--
.../controllers/container_requests_controller.rb | 2 +-
.../app/controllers/containers_controller.rb | 2 +-
.../app/controllers/healthcheck_controller.rb | 2 +-
apps/workbench/app/controllers/jobs_controller.rb | 4 +-
.../controllers/pipeline_instances_controller.rb | 2 +-
.../controllers/pipeline_templates_controller.rb | 2 +-
.../app/controllers/projects_controller.rb | 6 +-
apps/workbench/app/controllers/users_controller.rb | 2 +-
.../app/controllers/virtual_machines_controller.rb | 13 +-
.../app/controllers/work_units_controller.rb | 2 +-
.../app/controllers/workflows_controller.rb | 2 +-
apps/workbench/app/helpers/application_helper.rb | 4 +-
apps/workbench/app/helpers/collections_helper.rb | 2 +-
apps/workbench/app/mailers/issue_reporter.rb | 4 +-
.../app/mailers/request_shell_access_reporter.rb | 4 +-
apps/workbench/app/models/arvados_api_client.rb | 36 ++--
apps/workbench/app/models/repository.rb | 6 +-
.../api_client_authorizations/_show_help.html.erb | 2 +-
.../app/views/application/_breadcrumbs.html.erb | 2 +-
.../app/views/application/_report_error.html.erb | 2 +-
.../views/application/_report_issue_popup.html.erb | 4 +-
.../app/views/application/_show_sharing.html.erb | 2 +-
.../app/views/collections/show_file_links.html.erb | 2 +-
.../_getting_started_popup.html.erb | 2 +-
apps/workbench/app/views/jobs/_show_log.html.erb | 4 +-
.../app/views/layouts/application.html.erb | 10 +-
apps/workbench/app/views/layouts/body.html.erb | 38 ++--
.../_collections_notification.html.erb | 6 +-
.../notifications/_jobs_notification.html.erb | 7 +-
.../notifications/_pipelines_notification.html.erb | 6 +-
.../app/views/projects/_show_dashboard.html.erb | 6 +-
.../app/views/repositories/_show_help.html.erb | 6 +-
.../app/views/user_agreements/index.html.erb | 2 +-
.../app/views/users/_add_ssh_key_popup.html.erb | 2 +-
.../app/views/users/_current_token.html.erb | 4 +-
.../app/views/users/_setup_popup.html.erb | 2 +-
apps/workbench/app/views/users/_ssh_keys.html.erb | 2 +-
apps/workbench/app/views/users/_tables.html.erb | 4 +-
.../app/views/users/_virtual_machines.html.erb | 6 +-
apps/workbench/app/views/users/profile.html.erb | 31 +--
apps/workbench/app/views/users/welcome.html.erb | 8 +-
.../app/views/virtual_machines/_show_help.html.erb | 2 +-
.../app/views/virtual_machines/webshell.html.erb | 2 +-
.../app/views/work_units/_show_log.html.erb | 2 +-
apps/workbench/config/application.default.yml | 208 +--------------------
apps/workbench/config/application.rb | 5 +-
apps/workbench/config/arvados_config.rb | 194 +++++++++++++++++++
apps/workbench/config/load_config.rb | 71 -------
apps/workbench/fpm-info.sh | 4 +-
.../api => apps/workbench}/lib/config_loader.rb | 141 +++++++-------
apps/workbench/lib/config_validators.rb | 36 ++--
.../api => apps/workbench}/lib/tasks/config.rake | 0
apps/workbench/lib/tasks/config_check.rake | 23 ---
apps/workbench/lib/tasks/config_dump.rake | 10 -
.../test/controllers/actions_controller_test.rb | 4 +-
.../controllers/application_controller_test.rb | 16 +-
.../controllers/collections_controller_test.rb | 30 +--
.../test/controllers/disabled_api_test.rb | 2 +-
.../test/controllers/projects_controller_test.rb | 26 +--
.../test/controllers/users_controller_test.rb | 4 +-
.../test/integration/anonymous_access_test.rb | 8 +-
.../test/integration/application_layout_test.rb | 27 +--
apps/workbench/test/integration/download_test.rb | 4 +-
apps/workbench/test/integration/errors_test.rb | 6 +-
apps/workbench/test/integration/jobs_test.rb | 2 +-
.../test/integration/link_account_test.rb | 22 +--
apps/workbench/test/integration/projects_test.rb | 10 +-
.../test/integration/report_issue_test.rb | 4 +-
.../test/integration/user_profile_test.rb | 26 +--
.../test/integration/user_settings_menu_test.rb | 4 +-
apps/workbench/test/integration/websockets_test.rb | 4 +-
apps/workbench/test/integration/work_units_test.rb | 2 +-
apps/workbench/test/integration_helper.rb | 4 +-
.../collection_unit_test.rb | 2 +-
apps/workbench/test/test_helper.rb | 13 +-
apps/workbench/test/unit/user_test.rb | 2 +-
apps/workbench/test/unit/work_unit_test.rb | 2 +-
build/package-build-dockerfiles/Makefile | 4 +-
build/package-build-dockerfiles/centos7/Dockerfile | 8 +-
build/package-build-dockerfiles/debian8/Dockerfile | 8 +-
build/package-build-dockerfiles/debian9/Dockerfile | 8 +-
.../ubuntu1404/Dockerfile | 8 +-
.../ubuntu1604/Dockerfile | 8 +-
.../ubuntu1804/Dockerfile | 8 +-
build/rails-package-scripts/postinst.sh | 6 +-
build/run-build-packages.sh | 12 +-
build/run-library.sh | 14 --
build/run-tests.sh | 17 +-
cmd/arvados-server/cmd.go | 11 +-
...min_list_collections_without_property_py.liquid | 2 +-
...property_to_collections_under_project_py.liquid | 4 +-
.../_admin_update_collection_property_py.liquid | 8 +-
doc/admin/config-migration.html.textile.liquid | 27 ++-
doc/admin/upgrading.html.textile.liquid | 4 +
doc/api/methods.html.textile.liquid | 13 +-
doc/install/index.html.textile.liquid | 2 +-
doc/install/install-api-server.html.textile.liquid | 150 +++++++++------
.../install-dispatch-cloud.html.textile.liquid | 2 +-
.../install-workbench-app.html.textile.liquid | 60 ++++--
doc/sdk/cli/reference.html.textile.liquid | 2 +-
lib/cloud/cloudtest/cmd.go | 12 +-
lib/cloud/cloudtest/tester.go | 21 ++-
lib/config/cmd.go | 19 ++
lib/config/config.default.yml | 172 +++++++++++++++--
lib/config/export.go | 187 +++++++++++-------
lib/config/generated_config.go | 172 +++++++++++++++--
sdk/cwl/arvados_cwl/fsaccess.py | 6 +-
sdk/go/arvados/config.go | 11 +-
services/api/config/arvados_config.rb | 48 +++--
services/api/config/config.default.yml | 1 -
services/api/fpm-info.sh | 4 +-
services/login-sync/Gemfile.lock | 6 +-
tools/arvbox/bin/arvbox | 13 +-
tools/arvbox/lib/arvbox/docker/api-setup.sh | 25 +--
.../lib/arvbox/docker/service/controller/run | 9 +
.../arvbox/docker/service/workbench/run-service | 20 +-
.../crunchstat_summary/dygraphs.py | 27 ++-
.../crunchstat_summary/summarizer.py | 40 +++-
.../crunchstat_summary/webchart.py | 11 +-
...4-dz642-lymtndkpy39eibk-arv-mount.txt.gz.report | 1 +
...-dz642-lymtndkpy39eibk-crunchstat.txt.gz.report | 4 +-
...ainer_9tee4-dz642-lymtndkpy39eibk.txt.gz.report | 2 +
.../tests/logfile_20151204190335.txt.gz.report | 1 +
.../tests/logfile_20151210063411.txt.gz.report | 1 +
.../tests/logfile_20151210063439.txt.gz.report | 1 +
tools/crunchstat-summary/tests/test_examples.py | 2 +-
129 files changed, 1445 insertions(+), 989 deletions(-)
create mode 100644 apps/workbench/config/arvados_config.rb
delete mode 100644 apps/workbench/config/load_config.rb
copy {services/api => apps/workbench}/lib/config_loader.rb (61%)
copy {services/api => apps/workbench}/lib/tasks/config.rake (100%)
delete mode 100644 apps/workbench/lib/tasks/config_check.rake
delete mode 100644 apps/workbench/lib/tasks/config_dump.rake
delete mode 120000 services/api/config/config.default.yml
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Those revisions listed above that are new to this repository have
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commit b3a016e9a47d453b5ae4d287d8b6eaafd69971df
Merge: c16577403 5f943cd45
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Thu Jul 11 11:13:12 2019 -0400
14287: Merge branch 'master' into 14287-federated-list
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
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