[ARVADOS] updated: 1.3.0-410-ge231fef37

[Git user]

Summary of changes:
 sdk/cwl/arvados_cwl/__init__.py     |  6 ++++--
 sdk/cwl/arvados_cwl/arvcontainer.py | 14 ++++++++------
 sdk/cwl/arvados_cwl/arvdocker.py    |  1 +
 sdk/cwl/arvados_cwl/arvjob.py       | 10 ++++++----
 sdk/cwl/arvados_cwl/executor.py     | 18 +++++++++++-------
 sdk/cwl/arvados_cwl/fsaccess.py     |  4 ++--
 sdk/cwl/arvados_cwl/runner.py       |  4 ++--
 7 files changed, 34 insertions(+), 23 deletions(-)

       via  e231fef37079916d0dc6babf93d669d474598ced (commit)
       via  f1943e92b2c83d2884eeaa2829f1b4a07d23b9ee (commit)
       via  50ecc8767d360670b0f8906da4daa87e56779e54 (commit)
       via  6ab33cb91de748f4f8ec8e12377f0b0650804db1 (commit)
       via  0fc8778c47397f7e5de8481e0a3e7716ccc53d21 (commit)
       via  e7ce0cd2e144e9139cdbdaaab364803039627922 (commit)
      from  1c35232248baebeaa69e7e99d9827e7b9983fe6c (commit)

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commit e231fef37079916d0dc6babf93d669d474598ced
Merge: 1c3523224 f1943e92b
Author: Eric Biagiotti <ebiagiotti at veritasgenetics.com>
Date:   Thu Feb 28 15:33:38 2019 -0500

    Merge branch '9865-cwl-fix-ignored-exceptions'
    
    refs #9865
    
    Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti at veritasgenetics.com>


commit f1943e92b2c83d2884eeaa2829f1b4a07d23b9ee
Author: Eric Biagiotti <ebiagiotti at veritasgenetics.com>
Date:   Thu Feb 28 15:32:48 2019 -0500

    9865: Removes trailing whitespace
    
    Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti at veritasgenetics.com>

diff --git a/sdk/cwl/arvados_cwl/arvjob.py b/sdk/cwl/arvados_cwl/arvjob.py
index 086e299a5..ab2078e15 100644
--- a/sdk/cwl/arvados_cwl/arvjob.py
+++ b/sdk/cwl/arvados_cwl/arvjob.py
@@ -199,7 +199,7 @@ class ArvadosJob(JobBase):
                                     e)
             else:
                 logger.info("%s %s is %s", self.arvrunner.label(self), response["uuid"], response["state"])
-        except Exception: 
+        except Exception:
             logger.exception("%s error" % (self.arvrunner.label(self)))
             self.output_callback({}, "permanentFail")
 
diff --git a/sdk/cwl/arvados_cwl/executor.py b/sdk/cwl/arvados_cwl/executor.py
index a85e99e05..c1f2b5474 100644
--- a/sdk/cwl/arvados_cwl/executor.py
+++ b/sdk/cwl/arvados_cwl/executor.py
@@ -734,7 +734,7 @@ http://doc.arvados.org/install/install-api-server.html#disable_api_methods
                 logger.error("Interrupted, workflow will be cancelled")
             elif isinstance(sys.exc_info()[1], WorkflowException):
                 logger.error("Workflow execution failed:\n%s", sys.exc_info()[1], exc_info=(sys.exc_info()[1] if self.debug else False))
-            else: 
+            else:
                 logger.exception("Workflow execution failed")
 
             if self.pipeline:

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