[ARVADOS] created: 1.3.0-2-gbd7cd1395

[Git user]

        at  bd7cd13953c10de3c35fa1310848ae89ace3f765 (commit)


commit bd7cd13953c10de3c35fa1310848ae89ace3f765
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Tue Feb 12 10:05:50 2019 -0500

    cherry-pick c5a89fc4 #14770
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>

diff --git a/apps/workbench/app/controllers/work_units_controller.rb b/apps/workbench/app/controllers/work_units_controller.rb
index 767762c81..d3ded867c 100644
--- a/apps/workbench/app/controllers/work_units_controller.rb
+++ b/apps/workbench/app/controllers/work_units_controller.rb
@@ -126,7 +126,7 @@ class WorkUnitsController < ApplicationController
                           "--local",
                           "--api=containers",
                           "--project-uuid=#{params['work_unit']['owner_uuid']}",
-                          "--collection-keep-cache=#{keep_cache}",
+                          "--collection-cache-size=#{keep_cache}",
                           "/var/lib/cwl/workflow.json#main",
                           "/var/lib/cwl/cwl.input.json"]
 

commit 8847e85d63499f777c4b2884b7d51d276d6a10fe
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Tue Feb 12 10:04:19 2019 -0500

    cherry-pick 452d54d5 #14593
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>

diff --git a/doc/admin/upgrading.html.textile.liquid b/doc/admin/upgrading.html.textile.liquid
index 0941fef33..6a3e000ca 100644
--- a/doc/admin/upgrading.html.textile.liquid
+++ b/doc/admin/upgrading.html.textile.liquid
@@ -30,6 +30,14 @@ Note to developers: Add new items at the top. Include the date, issue number, co
 TODO: extract this information based on git commit messages and generate changelogs / release notes automatically.
 {% endcomment %}
 
+h3. v1.3.0 (2018-12-05)
+
+This release includes several database migrations, which will be executed automatically as part of the API server upgrade. On large Arvados installations, these migrations will take a while. We've seen the upgrade take 30 minutes or more on installations with a lot of collections.
+
+The @arvados-controller@ component now requires the /etc/arvados/config.yml file to be present. See <a href="{{ site.baseurl }}/install/install-controller.html#configuration">the @arvados-controller@ installation instructions</a>.
+
+Support for the deprecated "jobs" API is broken in this release.  Users who rely on it should not upgrade.  This will be fixed in an upcoming 1.3.1 patch release, however users are "encouraged to migrate":upgrade-crunch2.html as support for the "jobs" API will be dropped in an upcoming release.  Users who are already using the "containers" API are not affected.
+
 h3. v1.2.1 (2018-11-26)
 
 There are no special upgrade notes for this release.
diff --git a/sdk/cwl/arvados_cwl/crunch_script.py b/sdk/cwl/arvados_cwl/crunch_script.py
index 7512d5bef..61f9cbbe0 100644
--- a/sdk/cwl/arvados_cwl/crunch_script.py
+++ b/sdk/cwl/arvados_cwl/crunch_script.py
@@ -103,6 +103,7 @@ def run():
         arvargs.output_name = output_name
         arvargs.output_tags = output_tags
         arvargs.thread_count = 1
+        arvargs.collection_cache_size = None
 
         runner = arvados_cwl.ArvCwlExecutor(api_client=arvados.safeapi.ThreadSafeApiCache(
             api_params={"model": OrderedJsonModel()}, keep_params={"num_retries": 4}),

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hooks/post-receive
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