[ARVADOS] updated: 1.3.0-269-gbdbf7c4ee
Git user
git at public.curoverse.com
Tue Feb 5 13:30:01 EST 2019
Summary of changes:
.gitignore | 3 +-
build/build-dev-docker-jobs-image.sh | 8 +-
build/run-tests.sh | 1 +
sdk/cwl/arvados_cwl/__init__.py | 37 +-
sdk/cwl/arvados_cwl/arvcontainer.py | 10 +-
sdk/cwl/arvados_cwl/arvjob.py | 8 +-
sdk/cwl/arvados_cwl/arvtool.py | 2 +-
sdk/cwl/arvados_cwl/arvworkflow.py | 5 +-
sdk/cwl/arvados_cwl/crunch_script.py | 5 +-
sdk/cwl/arvados_cwl/done.py | 8 +-
sdk/cwl/arvados_cwl/executor.py | 30 +-
sdk/cwl/arvados_cwl/fsaccess.py | 30 +-
sdk/cwl/arvados_cwl/http.py | 22 +-
sdk/cwl/arvados_cwl/pathmapper.py | 20 +-
sdk/cwl/arvados_cwl/perf.py | 2 +
sdk/cwl/arvados_cwl/runner.py | 18 +-
sdk/cwl/arvados_cwl/task_queue.py | 15 +-
sdk/cwl/arvados_cwl/util.py | 7 +-
sdk/cwl/arvados_version.py | 3 +
sdk/cwl/gittaggers.py | 3 +
sdk/cwl/setup.py | 4 +
sdk/cwl/test_with_arvbox.sh | 44 +-
sdk/cwl/tests/12213-keepref-expr.cwl | 3 +-
sdk/cwl/tests/arvados-tests.yml | 4 +-
sdk/cwl/tests/federation/framework/check_exist.py | 1 +
sdk/cwl/tests/federation/framework/prepare.py | 1 +
sdk/cwl/tests/hw.py | 3 +-
sdk/cwl/tests/matcher.py | 2 +
sdk/cwl/tests/test_container.py | 3 +
sdk/cwl/tests/test_http.py | 5 +-
sdk/cwl/tests/test_job.py | 36 +-
sdk/cwl/tests/test_make_output.py | 7 +-
sdk/cwl/tests/test_submit.py | 591 +++++++++-------------
sdk/cwl/tests/test_urljoin.py | 22 +-
sdk/cwl/tests/test_util.py | 15 +-
sdk/cwl/tests/wf/check_mem.py | 5 +-
sdk/dev-jobs.dockerfile | 20 +-
sdk/python/arvados/commands/keepdocker.py | 3 +-
sdk/python/setup.py | 4 +
39 files changed, 521 insertions(+), 489 deletions(-)
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from d3cd31711ab889e9c2c4732a977515a5de3236eb (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit bdbf7c4ee346fd1615f882255b3606d8d5360710
Merge: d3cd31711 41beca9c1
Author: Eric Biagiotti <eric.biagiotti at gmail.com>
Date: Tue Feb 5 13:25:14 2019 -0500
Merge branch '13306-arvados-cwl-runner-py3-support'
refs #13306
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti at gmail.com>
commit 41beca9c117fa9a7f46addd3a9e8a46cc7ffe328
Author: Eric Biagiotti <ebiagiotti at veritasgenetcs.com>
Date: Tue Feb 5 12:55:54 2019 -0500
13306: Adds declaration of py2/3 support to arvados cwl and python sdks
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti at gmail.com>
diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index 3bd62532a..711796374 100644
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -45,6 +45,10 @@ setup(name='arvados-cwl-runner',
data_files=[
('share/doc/arvados-cwl-runner', ['LICENSE-2.0.txt', 'README.rst']),
],
+ classifiers=[
+ 'Programming Language :: Python :: 2',
+ 'Programming Language :: Python :: 3',
+ ],
test_suite='tests',
tests_require=[
'mock>=1.0',
diff --git a/sdk/python/setup.py b/sdk/python/setup.py
index 9b38f0714..5c781b158 100644
--- a/sdk/python/setup.py
+++ b/sdk/python/setup.py
@@ -56,6 +56,10 @@ setup(name='arvados-python-client',
'ws4py >=0.4.2',
'subprocess32 >=3.5.1',
],
+ classifiers=[
+ 'Programming Language :: Python :: 2',
+ 'Programming Language :: Python :: 3',
+ ],
test_suite='tests',
tests_require=['pbr<1.7.0', 'mock>=1.0', 'PyYAML'],
zip_safe=False
commit e17f20cd7d10d81b0dcb5522a3e93305b318da8f
Author: Eric Biagiotti <ebiagiotti at veritasgenetcs.com>
Date: Tue Feb 5 11:53:07 2019 -0500
13306: fixes test_with_arvados.sh pip executable with python2
Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <eric.biagiotti at gmail.com>
diff --git a/sdk/cwl/test_with_arvbox.sh b/sdk/cwl/test_with_arvbox.sh
index 22d47a5d4..37eb5171e 100755
--- a/sdk/cwl/test_with_arvbox.sh
+++ b/sdk/cwl/test_with_arvbox.sh
@@ -92,7 +92,7 @@ set -x
if [ \$PYCMD = "python3" ]; then
pip3 install cwltest
else
- pip3 install cwltest
+ pip install cwltest
fi
mkdir -p /tmp/cwltest
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