[ARVADOS] updated: 1.3.0-811-gcf1dcfb87

Git user git at public.curoverse.com
Tue Apr 23 17:49:38 UTC 2019


Summary of changes:
 .gitignore                                         |   1 +
 .licenseignore                                     |   2 +
 build/run-tests.sh                                 |   6 +
 doc/Rakefile                                       |  19 +-
 doc/_config.yml                                    |   6 +-
 doc/sdk/index.html.textile.liquid                  |   3 +-
 doc/sdk/java-v2/example.html.textile.liquid        |  49 ++
 doc/sdk/java-v2/index.html.textile.liquid          | 146 ++++
 doc/sdk/java-v2/javadoc.html.textile.liquid        |  15 +
 doc/sdk/java/index.html.textile.liquid             |   4 +-
 sdk/java-v2/.gitignore                             |   9 +
 sdk/java-v2/.licenseignore                         |   4 +
 sdk/java-v2/COPYING                                |  15 +
 sdk/java-v2/README.md                              | 115 +++
 agpl-3.0.txt => sdk/java-v2/agpl-3.0.txt           |   0
 apache-2.0.txt => sdk/java-v2/apache-2.0.txt       |   0
 sdk/java-v2/build.gradle                           | 113 +++
 sdk/java-v2/settings.gradle                        |   1 +
 .../arvados/client/api/client/BaseApiClient.java   |  83 ++
 .../client/api/client/BaseStandardApiClient.java   | 153 ++++
 .../client/api/client/CollectionsApiClient.java    |  45 ++
 .../client/api/client/CountingFileRequestBody.java |  84 ++
 .../arvados/client/api/client/GroupsApiClient.java |  61 ++
 .../client/api/client/KeepServerApiClient.java     |  54 ++
 .../client/api/client/KeepServicesApiClient.java   |  43 +
 .../client/api/client/KeepWebApiClient.java        |  37 +
 .../client/api/client/ProgressListener.java        |  14 +
 .../arvados/client/api/client/UsersApiClient.java  |  51 ++
 .../api/client/factory/OkHttpClientFactory.java    |  89 +++
 .../org/arvados/client/api/model/ApiError.java     |  42 +
 .../org/arvados/client/api/model/Collection.java   | 137 ++++
 .../arvados/client/api/model/CollectionList.java   |  32 +
 .../java/org/arvados/client/api/model/Group.java   | 319 ++++++++
 .../org/arvados/client/api/model/GroupList.java    |  32 +
 .../java/org/arvados/client/api/model/Item.java    | 123 +++
 .../org/arvados/client/api/model/ItemList.java     |  80 ++
 .../org/arvados/client/api/model/KeepService.java  |  77 ++
 .../arvados/client/api/model/KeepServiceList.java  |  32 +
 .../client/api/model/RuntimeConstraints.java       |  60 ++
 .../java/org/arvados/client/api/model/User.java    | 147 ++++
 .../org/arvados/client/api/model/UserList.java     |  32 +
 .../client/api/model/argument/Argument.java        |  24 +
 .../client/api/model/argument/ContentsGroup.java   |  63 ++
 .../arvados/client/api/model/argument/Filter.java  | 118 +++
 .../client/api/model/argument/ListArgument.java    | 123 +++
 .../client/api/model/argument/UntrashGroup.java    |  28 +
 .../java/org/arvados/client/common/Characters.java |  21 +
 .../java/org/arvados/client/common/Headers.java    |  15 +
 .../java/org/arvados/client/common/Patterns.java   |  19 +
 .../org/arvados/client/config/ConfigProvider.java  |  40 +
 .../client/config/ExternalConfigProvider.java      | 181 +++++
 .../arvados/client/config/FileConfigProvider.java  | 107 +++
 .../client/exception/ArvadosApiException.java      |  25 +
 .../client/exception/ArvadosClientException.java   |  27 +
 .../org/arvados/client/facade/ArvadosFacade.java   | 307 ++++++++
 .../client/logic/collection/CollectionFactory.java | 134 ++++
 .../arvados/client/logic/collection/FileToken.java |  60 ++
 .../client/logic/collection/ManifestDecoder.java   |  74 ++
 .../client/logic/collection/ManifestFactory.java   |  67 ++
 .../client/logic/collection/ManifestStream.java    |  45 ++
 .../arvados/client/logic/keep/FileDownloader.java  | 256 ++++++
 .../client/logic/keep/FileTransferHandler.java     |  55 ++
 .../arvados/client/logic/keep/FileUploader.java    | 101 +++
 .../org/arvados/client/logic/keep/KeepClient.java  | 244 ++++++
 .../org/arvados/client/logic/keep/KeepLocator.java |  86 ++
 .../DownloadFolderAlreadyExistsException.java      |  24 +
 .../keep/exception/FileAlreadyExistsException.java |  23 +
 .../java/org/arvados/client/utils/FileMerge.java   |  26 +
 .../java/org/arvados/client/utils/FileSplit.java   |  44 ++
 sdk/java-v2/src/main/resources/reference.conf      |  23 +
 .../api/client/BaseStandardApiClientTest.java      |  50 ++
 .../api/client/CollectionsApiClientTest.java       | 112 +++
 .../client/api/client/GroupsApiClientTest.java     |  95 +++
 .../client/api/client/KeepServerApiClientTest.java |  70 ++
 .../api/client/KeepServicesApiClientTest.java      |  78 ++
 .../client/api/client/UsersApiClientTest.java      | 126 +++
 .../client/factory/OkHttpClientFactoryTest.java    |  96 +++
 .../facade/ArvadosFacadeIntegrationTest.java       | 258 ++++++
 .../arvados/client/facade/ArvadosFacadeTest.java   | 200 +++++
 .../client/junit/categories/IntegrationTests.java  |  10 +
 .../client/logic/collection/FileTokenTest.java     |  42 +
 .../logic/collection/ManifestDecoderTest.java      | 108 +++
 .../logic/collection/ManifestFactoryTest.java      |  40 +
 .../logic/collection/ManifestStreamTest.java       |  27 +
 .../client/logic/keep/FileDownloaderTest.java      | 145 ++++
 .../arvados/client/logic/keep/KeepClientTest.java  | 118 +++
 .../arvados/client/logic/keep/KeepLocatorTest.java |  57 ++
 .../client/test/utils/ApiClientTestUtils.java      |  45 ++
 .../test/utils/ArvadosClientIntegrationTest.java   |  28 +
 .../utils/ArvadosClientMockedWebServerTest.java    |  27 +
 .../client/test/utils/ArvadosClientUnitTest.java   |  24 +
 .../arvados/client/test/utils/FileTestUtils.java   |  50 ++
 .../arvados/client/test/utils/RequestMethod.java   |  13 +
 .../org/arvados/client/utils/FileMergeTest.java    |  48 ++
 .../org/arvados/client/utils/FileSplitTest.java    |  48 ++
 sdk/java-v2/src/test/resources/application.conf    |  10 +
 .../resources/integration-tests-application.conf   |  23 +
 .../integration-tests-application.conf.example     |  16 +
 .../org.mockito.plugins.MockMaker                  |   1 +
 .../api/client/collections-create-manifest.json    |  22 +
 .../api/client/collections-create-simple.json      |  22 +
 .../api/client/collections-download-file.json      |  22 +
 .../arvados/client/api/client/collections-get.json |  22 +
 .../client/api/client/collections-list.json        | 871 +++++++++++++++++++++
 .../org/arvados/client/api/client/groups-get.json  |  21 +
 .../org/arvados/client/api/client/groups-list.json | 430 ++++++++++
 .../client/api/client/keep-client-test-file.txt    |   1 +
 .../client/keep-services-accessible-disk-only.json |  42 +
 .../api/client/keep-services-accessible.json       |  42 +
 .../client/api/client/keep-services-get.json       |  16 +
 .../client/api/client/keep-services-list.json      |  58 ++
 .../api/client/keep-services-not-accessible.json   |   9 +
 .../arvados/client/api/client/users-create.json    |  26 +
 .../org/arvados/client/api/client/users-get.json   |  26 +
 .../org/arvados/client/api/client/users-list.json  | 115 +++
 .../arvados/client/api/client/users-system.json    |  24 +
 .../src/test/resources/selfsigned.keystore.jks     | Bin 0 -> 2247 bytes
 sdk/java-v2/test-in-docker.sh                      |  48 ++
 118 files changed, 8472 insertions(+), 5 deletions(-)
 create mode 100644 doc/sdk/java-v2/example.html.textile.liquid
 create mode 100644 doc/sdk/java-v2/index.html.textile.liquid
 create mode 100644 doc/sdk/java-v2/javadoc.html.textile.liquid
 create mode 100644 sdk/java-v2/.gitignore
 create mode 100644 sdk/java-v2/.licenseignore
 create mode 100644 sdk/java-v2/COPYING
 create mode 100644 sdk/java-v2/README.md
 copy agpl-3.0.txt => sdk/java-v2/agpl-3.0.txt (100%)
 copy apache-2.0.txt => sdk/java-v2/apache-2.0.txt (100%)
 create mode 100644 sdk/java-v2/build.gradle
 create mode 100644 sdk/java-v2/settings.gradle
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/BaseApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/BaseStandardApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/CollectionsApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/CountingFileRequestBody.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/GroupsApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/KeepServerApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/KeepServicesApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/KeepWebApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/ProgressListener.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/UsersApiClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/client/factory/OkHttpClientFactory.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/ApiError.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/Collection.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/CollectionList.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/Group.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/GroupList.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/Item.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/ItemList.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/KeepService.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/KeepServiceList.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/RuntimeConstraints.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/User.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/UserList.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/argument/Argument.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/argument/ContentsGroup.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/argument/Filter.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/argument/ListArgument.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/api/model/argument/UntrashGroup.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/common/Characters.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/common/Headers.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/common/Patterns.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/config/ConfigProvider.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/config/ExternalConfigProvider.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/config/FileConfigProvider.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/exception/ArvadosApiException.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/exception/ArvadosClientException.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/facade/ArvadosFacade.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/collection/CollectionFactory.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/collection/FileToken.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/collection/ManifestDecoder.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/collection/ManifestFactory.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/collection/ManifestStream.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/keep/FileDownloader.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/keep/FileTransferHandler.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/keep/FileUploader.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/keep/KeepClient.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/keep/KeepLocator.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/keep/exception/DownloadFolderAlreadyExistsException.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/logic/keep/exception/FileAlreadyExistsException.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/utils/FileMerge.java
 create mode 100644 sdk/java-v2/src/main/java/org/arvados/client/utils/FileSplit.java
 create mode 100644 sdk/java-v2/src/main/resources/reference.conf
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/BaseStandardApiClientTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/CollectionsApiClientTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/GroupsApiClientTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/KeepServerApiClientTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/KeepServicesApiClientTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/UsersApiClientTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/api/client/factory/OkHttpClientFactoryTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/facade/ArvadosFacadeIntegrationTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/facade/ArvadosFacadeTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/junit/categories/IntegrationTests.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/logic/collection/FileTokenTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/logic/collection/ManifestDecoderTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/logic/collection/ManifestFactoryTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/logic/collection/ManifestStreamTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/logic/keep/FileDownloaderTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/logic/keep/KeepClientTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/logic/keep/KeepLocatorTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/test/utils/ApiClientTestUtils.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/test/utils/ArvadosClientIntegrationTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/test/utils/ArvadosClientMockedWebServerTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/test/utils/ArvadosClientUnitTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/test/utils/FileTestUtils.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/test/utils/RequestMethod.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/utils/FileMergeTest.java
 create mode 100644 sdk/java-v2/src/test/java/org/arvados/client/utils/FileSplitTest.java
 create mode 100644 sdk/java-v2/src/test/resources/application.conf
 create mode 100644 sdk/java-v2/src/test/resources/integration-tests-application.conf
 create mode 100644 sdk/java-v2/src/test/resources/integration-tests-application.conf.example
 create mode 100644 sdk/java-v2/src/test/resources/mockito-extensions/org.mockito.plugins.MockMaker
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/collections-create-manifest.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/collections-create-simple.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/collections-download-file.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/collections-get.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/collections-list.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/groups-get.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/groups-list.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/keep-client-test-file.txt
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/keep-services-accessible-disk-only.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/keep-services-accessible.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/keep-services-get.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/keep-services-list.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/keep-services-not-accessible.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/users-create.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/users-get.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/users-list.json
 create mode 100644 sdk/java-v2/src/test/resources/org/arvados/client/api/client/users-system.json
 create mode 100644 sdk/java-v2/src/test/resources/selfsigned.keystore.jks
 create mode 100755 sdk/java-v2/test-in-docker.sh

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commit cf1dcfb8715822f7ac5fe4fce067197dd84bad54
Merge: e250e8435 8b65fa06a
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date:   Tue Apr 23 13:49:25 2019 -0400

    Merge branch '14670-new-java-sdk-docs' refs #14670
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>


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