[ARVADOS] updated: 1.2.0-110-g466e236c4
Git user
git at public.curoverse.com
Sat Sep 29 11:18:36 EDT 2018
Summary of changes:
sdk/cwl/arvados_cwl/runner.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
via 466e236c4174de64bdefeb1766160a11217c8c1c (commit)
from 4a16f09d3df0c7899fa6367d27b9f66ee9d4582b (commit)
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commit 466e236c4174de64bdefeb1766160a11217c8c1c
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date: Sat Sep 29 11:17:29 2018 -0400
a-c-r recognizes that http and https needs to be uploaded to keep
refs #13573
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>
diff --git a/sdk/cwl/arvados_cwl/runner.py b/sdk/cwl/arvados_cwl/runner.py
index 29c0535d9..41166c512 100644
--- a/sdk/cwl/arvados_cwl/runner.py
+++ b/sdk/cwl/arvados_cwl/runner.py
@@ -131,7 +131,8 @@ def upload_dependencies(arvrunner, name, document_loader,
def only_real(obj):
# Only interested in local files than need to be uploaded,
# don't include file literals, keep references, etc.
- if obj.get("location", "").startswith("file:"):
+ sp = obj.get("location", "").split(":")
+ if len(sp) > 1 and sp[0] in ("file", "http", "https"):
sc.append(obj)
visit_class(sc_result, ("File", "Directory"), only_real)
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