[ARVADOS] updated: 1.2.0-162-g0f11eb78e
Git user
git at public.curoverse.com
Fri Oct 5 09:09:55 EDT 2018
Summary of changes:
build/package-build-dockerfiles/Makefile | 6 +-
build/package-build-dockerfiles/centos7/Dockerfile | 3 +-
build/package-build-dockerfiles/debian8/Dockerfile | 3 +-
.../package-build-dockerfiles/debian9/D39DC0E3.asc | 692 ------------
build/package-build-dockerfiles/debian9/Dockerfile | 4 +-
.../ubuntu1404/Dockerfile | 3 +-
.../ubuntu1604/Dockerfile | 3 +-
.../ubuntu1804/Dockerfile | 3 +-
build/run-build-packages.sh | 9 +-
doc/_config.yml | 1 +
doc/api/methods.html.textile.liquid | 29 +-
doc/api/methods/collections.html.textile.liquid | 4 +-
.../methods/container_requests.html.textile.liquid | 2 +
doc/api/methods/containers.html.textile.liquid | 4 +-
doc/api/methods/groups.html.textile.liquid | 1 +
doc/api/methods/workflows.html.textile.liquid | 2 +
doc/architecture/Arvados_federation.odg | Bin 0 -> 16162 bytes
doc/architecture/federation.html.textile.liquid | 111 ++
doc/images/arvados_federation.svg | 1133 ++++++++++++++++++++
doc/index.html.liquid | 22 +-
doc/install/install-api-server.html.textile.liquid | 39 +-
lib/controller/federation.go | 600 ++++++++++-
lib/controller/federation_test.go | 440 +++++++-
lib/controller/handler.go | 15 +-
lib/controller/proxy.go | 34 +-
sdk/cwl/arvados_cwl/runner.py | 3 +-
sdk/go/arvados/collection.go | 2 +-
sdk/go/arvados/config.go | 20 +
sdk/go/arvados/container.go | 43 +
sdk/go/arvados/fs_collection.go | 51 +-
sdk/go/arvados/fs_collection_test.go | 16 +-
sdk/go/arvados/integration_test_cluster.go | 25 +
sdk/go/arvadostest/fixtures.go | 4 +-
sdk/go/httpserver/error.go | 7 +
sdk/go/keepclient/discover.go | 8 +-
sdk/go/keepclient/support.go | 2 +-
.../api/app/controllers/application_controller.rb | 8 +-
.../controllers/arvados/v1/groups_controller.rb | 72 +-
.../controllers/arvados/v1/schema_controller.rb | 2 +
services/api/app/middlewares/arvados_api_token.rb | 3 +
.../api/app/models/api_client_authorization.rb | 12 +
services/api/app/models/collection.rb | 9 +-
services/api/app/models/container.rb | 54 +-
services/api/app/models/container_request.rb | 49 +-
services/api/config/application.default.yml | 18 +
.../api/config/initializers/legacy_jobs_api.rb | 16 +
.../20180917205609_recompute_file_names_index.rb | 55 +
services/api/db/structure.sql | 3 +-
services/api/lib/enable_jobs_api.rb | 39 +
.../arvados/v1/collections_controller_test.rb | 39 +-
.../arvados/v1/groups_controller_test.rb | 73 ++
services/api/test/test_helper.rb | 3 +
.../api/test/unit/collection_performance_test.rb | 9 +-
services/api/test/unit/container_test.rb | 75 +-
services/api/test/unit/job_test.rb | 28 +
services/crunch-run/copier.go | 10 +-
services/crunch-run/crunchrun.go | 180 +++-
services/crunch-run/crunchrun_test.go | 25 +-
services/crunch-run/logging.go | 59 +-
services/crunch-run/logging_test.go | 47 +
services/keep-web/handler_test.go | 37 +
services/keepstore/handler_test.go | 10 +-
services/keepstore/handlers.go | 41 +-
services/keepstore/keepstore.go | 19 +-
services/keepstore/mounts_test.go | 2 +-
services/keepstore/proxy_remote.go | 113 ++
services/keepstore/proxy_remote_test.go | 149 +++
.../crunchstat_summary/reader.py | 28 +-
.../crunchstat_summary/summarizer.py | 40 +-
...er_9tee4-dz642-lymtndkpy39eibk-arv-mount.txt.gz | Bin 0 -> 235 bytes
...4-dz642-lymtndkpy39eibk-arv-mount.txt.gz.report | 24 +
...r_9tee4-dz642-lymtndkpy39eibk-crunchstat.txt.gz | Bin 0 -> 663 bytes
...-dz642-lymtndkpy39eibk-crunchstat.txt.gz.report | 27 +
...ainer_9tee4-dz642-lymtndkpy39eibk.txt.gz.report | 38 +
...r_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz | Bin 622 -> 0 bytes
...-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz.report | 23 -
tools/crunchstat-summary/tests/test_examples.py | 19 +-
77 files changed, 3730 insertions(+), 1072 deletions(-)
delete mode 100644 build/package-build-dockerfiles/debian9/D39DC0E3.asc
create mode 100644 doc/architecture/Arvados_federation.odg
create mode 100644 doc/architecture/federation.html.textile.liquid
create mode 100644 doc/images/arvados_federation.svg
create mode 100644 sdk/go/arvados/integration_test_cluster.go
create mode 100644 services/api/config/initializers/legacy_jobs_api.rb
create mode 100644 services/api/db/migrate/20180917205609_recompute_file_names_index.rb
create mode 100644 services/api/lib/enable_jobs_api.rb
create mode 100644 services/keepstore/proxy_remote.go
create mode 100644 services/keepstore/proxy_remote_test.go
create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-lymtndkpy39eibk-arv-mount.txt.gz
create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-lymtndkpy39eibk-arv-mount.txt.gz.report
create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-lymtndkpy39eibk-crunchstat.txt.gz
create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-lymtndkpy39eibk-crunchstat.txt.gz.report
create mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-lymtndkpy39eibk.txt.gz.report
delete mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz
delete mode 100644 tools/crunchstat-summary/tests/container_9tee4-dz642-mjfb0i5hzojp16a-crunchstat.txt.gz.report
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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit 0f11eb78e075445d1769b445ee12328bdb397781
Merge: 728b7ee1f 04b9d6e93
Author: Lucas Di Pentima <ldipentima at veritasgenetics.com>
Date: Fri Oct 5 10:09:16 2018 -0300
Merge branch 'master' into 13561-collection-versions-api
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima at veritasgenetics.com>
diff --cc services/api/db/structure.sql
index 71d630f6e,f8d9b3f35..5b579bd39
--- a/services/api/db/structure.sql
+++ b/services/api/db/structure.sql
@@@ -3179,13 -3169,5 +3179,14 @@@ INSERT INTO schema_migrations (version
INSERT INTO schema_migrations (version) VALUES ('20180904110712');
+INSERT INTO schema_migrations (version) VALUES ('20180913175443');
+
+INSERT INTO schema_migrations (version) VALUES ('20180915155335');
+
+ INSERT INTO schema_migrations (version) VALUES ('20180917205609');
+
+INSERT INTO schema_migrations (version) VALUES ('20180919001158');
+
+INSERT INTO schema_migrations (version) VALUES ('20181001175023');
+
+INSERT INTO schema_migrations (version) VALUES ('20181004131141');
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