[ARVADOS] updated: 1.2.0-307-gc3b26754a
Git user
git at public.curoverse.com
Tue Nov 6 09:41:51 EST 2018
Summary of changes:
apps/workbench/Gemfile | 4 +-
apps/workbench/Gemfile.lock | 16 +-
apps/workbench/app/models/container_work_unit.rb | 2 +-
apps/workbench/app/views/layouts/body.html.erb | 4 +
.../app/views/work_units/_show_status.html.erb | 2 +-
apps/workbench/config/application.default.yml | 6 +
apps/workbench/test/integration_helper.rb | 18 +-
build/go-python-package-scripts/postinst | 4 +-
build/go-python-package-scripts/prerm | 4 +-
.../.gitignore | 0
.../Makefile | 10 +-
build/package-test-dockerfiles/README | 7 +
build/package-test-dockerfiles/centos7/Dockerfile | 6 +-
build/package-test-dockerfiles/debian8/Dockerfile | 11 +-
.../package-test-dockerfiles/debian9/D39DC0E3.asc | 692 ------------------
build/package-test-dockerfiles/debian9/Dockerfile | 12 +-
.../package-test-dockerfiles/ubuntu1404/Dockerfile | 11 +-
.../package-test-dockerfiles/ubuntu1604/Dockerfile | 11 +-
.../package-test-dockerfiles/ubuntu1804/Dockerfile | 9 +-
build/run-build-packages-one-target.sh | 1 +
build/run-build-packages.sh | 10 +-
build/run-tests.sh | 4 +
doc/_config.yml | 4 +
doc/_includes/_create_superuser_token.liquid | 14 +
doc/_includes/_install_compute_docker.liquid | 2 +-
.../collection-versioning.html.textile.liquid | 32 +
doc/admin/health-checks.html.textile.liquid | 21 +-
doc/admin/metrics.html.textile.liquid | 27 +
doc/admin/upgrade-crunch2.html.textile.liquid | 53 ++
doc/admin/upgrading.html.textile.liquid | 147 +++-
doc/api/methods/collections.html.textile.liquid | 12 +-
.../methods/container_requests.html.textile.liquid | 6 +-
doc/api/methods/containers.html.textile.liquid | 4 +-
.../install-dispatch.html.textile.liquid | 9 +-
.../install-keep-balance.html.textile.liquid | 7 +-
doc/install/install-keepproxy.html.textile.liquid | 2 +-
doc/install/install-keepstore.html.textile.liquid | 8 +-
.../install-shell-server.html.textile.liquid | 2 +-
doc/user/cwl/cwl-style.html.textile.liquid | 9 +-
.../collection-versioning.html.textile.liquid | 107 +++
lib/controller/fed_collections.go | 300 ++++++++
lib/controller/fed_containers.go | 102 +++
lib/controller/fed_generic.go | 347 ++++++++++
lib/controller/federation.go | 771 ++++-----------------
lib/controller/federation_test.go | 76 ++
lib/controller/handler.go | 26 +-
lib/controller/handler_test.go | 36 +
lib/controller/proxy.go | 78 +--
sdk/go/arvados/api_client_authorization.go | 6 +-
sdk/go/arvados/config.go | 3 +
sdk/go/arvados/container.go | 1 +
sdk/go/arvados/resource_list.go | 17 +-
sdk/go/arvadostest/fixtures.go | 2 +
sdk/go/auth/auth.go | 6 +-
sdk/go/auth/handlers.go | 50 ++
sdk/go/auth/handlers_test.go | 79 +++
sdk/go/health/aggregator.go | 2 +-
sdk/go/health/aggregator_test.go | 2 +
sdk/go/httpserver/id_generator.go | 8 +-
sdk/go/httpserver/metrics.go | 16 +-
.../arvados/v1/collections_controller.rb | 13 -
.../arvados/v1/containers_controller.rb | 19 +-
.../api/app/models/api_client_authorization.rb | 22 +-
services/api/app/models/arvados_model.rb | 18 +-
services/api/app/models/collection.rb | 25 +-
services/api/app/models/container.rb | 133 +++-
services/api/app/models/container_request.rb | 37 +-
.../20181005192222_add_container_runtime_token.rb | 7 +
...0181011184200_add_runtime_token_to_container.rb | 5 +
services/api/db/structure.sql | 13 +-
services/api/lib/sweep_trashed_objects.rb | 3 +
.../test/fixtures/api_client_authorizations.yml | 22 +
services/api/test/fixtures/collections.yml | 22 +-
services/api/test/fixtures/container_requests.yml | 20 +
services/api/test/fixtures/containers.yml | 26 +
services/api/test/fixtures/links.yml | 14 +
services/api/test/fixtures/users.yml | 16 +
.../arvados/v1/collections_controller_test.rb | 50 +-
.../v1/container_requests_controller_test.rb | 17 +
.../arvados/v1/containers_controller_test.rb | 10 +
.../api/test/integration/container_auth_test.rb | 65 ++
services/api/test/integration/remote_user_test.rb | 37 +-
.../api/test/unit/api_client_authorization_test.rb | 8 +
services/api/test/unit/collection_test.rb | 20 +
services/api/test/unit/container_request_test.rb | 94 ++-
services/api/test/unit/container_test.rb | 157 ++++-
services/api/test/unit/job_test.rb | 1 +
services/arv-git-httpd/auth_handler.go | 2 +-
services/crunch-run/crunchrun.go | 67 +-
services/crunch-run/crunchrun_test.go | 80 ++-
.../dockercleaner/arvados-docker-cleaner.service | 2 +-
services/keep-balance/balance.go | 103 ++-
services/keep-balance/balance_run_test.go | 78 ++-
services/keep-balance/balance_test.go | 9 +-
services/keep-balance/block_state.go | 2 +
services/keep-balance/collection.go | 17 +-
services/keep-balance/integration_test.go | 15 +-
services/keep-balance/keep-balance.service | 1 +
services/keep-balance/main.go | 116 +---
services/keep-balance/metrics.go | 118 ++++
services/keep-balance/server.go | 197 ++++++
services/keep-balance/time_me.go | 18 -
services/keep-balance/usage.go | 2 +
services/keep-web/handler.go | 4 +-
services/keep-web/handler_test.go | 34 +
services/keep-web/server.go | 2 +-
services/keep-web/server_test.go | 14 +
services/keepstore/config.go | 3 +-
services/keepstore/handlers.go | 4 +-
services/keepstore/mounts_test.go | 7 +-
services/nodemanager/MANIFEST.in | 3 +-
.../arvados-node-manager.service} | 11 +-
services/nodemanager/setup.py | 2 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 4 +
vendor/vendor.json | 6 +
115 files changed, 3174 insertions(+), 1859 deletions(-)
copy build/{package-build-dockerfiles => package-test-dockerfiles}/.gitignore (100%)
copy build/{package-build-dockerfiles => package-test-dockerfiles}/Makefile (72%)
create mode 100644 build/package-test-dockerfiles/README
delete mode 100644 build/package-test-dockerfiles/debian9/D39DC0E3.asc
create mode 100644 doc/_includes/_create_superuser_token.liquid
create mode 100644 doc/admin/collection-versioning.html.textile.liquid
create mode 100644 doc/admin/upgrade-crunch2.html.textile.liquid
create mode 100644 doc/user/topics/collection-versioning.html.textile.liquid
create mode 100644 lib/controller/fed_collections.go
create mode 100644 lib/controller/fed_containers.go
create mode 100644 lib/controller/fed_generic.go
create mode 100644 sdk/go/auth/handlers.go
create mode 100644 sdk/go/auth/handlers_test.go
create mode 100644 services/api/db/migrate/20181005192222_add_container_runtime_token.rb
create mode 100644 services/api/db/migrate/20181011184200_add_runtime_token_to_container.rb
create mode 100644 services/api/test/integration/container_auth_test.rb
create mode 100644 services/keep-balance/metrics.go
create mode 100644 services/keep-balance/server.go
delete mode 100644 services/keep-balance/time_me.go
copy services/{health/arvados-health.service => nodemanager/arvados-node-manager.service} (62%)
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commit c3b26754a231ec909506f2ff28af1af9f2e27f2b
Merge: 71fa8bdbd 12495b9c8
Author: Lucas Di Pentima <ldipentima at veritasgenetics.com>
Date: Tue Nov 6 11:41:06 2018 -0300
Merge branch 'master' into 14259-pysdk-remote-block-copy
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima at veritasgenetics.com>
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