[ARVADOS] updated: 1.1.4-313-gc856e47
Git user
git at public.curoverse.com
Wed May 23 22:19:11 EDT 2018
Summary of changes:
build/check-copyright-notices | 2 +-
sdk/R/R/Arvados.R | 4 ++++
sdk/R/R/ArvadosFile.R | 4 ++++
sdk/R/R/Collection.R | 4 ++++
sdk/R/R/CollectionTree.R | 4 ++++
sdk/R/R/HttpParser.R | 4 ++++
sdk/R/R/HttpRequest.R | 4 ++++
sdk/R/R/RESTService.R | 4 ++++
sdk/R/R/Subcollection.R | 4 ++++
sdk/R/R/autoGenAPI.R | 4 ++++
sdk/R/R/util.R | 4 ++++
sdk/R/createDoc.R | 4 ++++
sdk/R/install_deps.R | 4 ++++
sdk/R/run_test.R | 4 ++++
sdk/R/tests/testthat.R | 4 ++++
sdk/R/tests/testthat/fakes/FakeArvados.R | 4 ++++
sdk/R/tests/testthat/fakes/FakeHttpParser.R | 4 ++++
sdk/R/tests/testthat/fakes/FakeHttpRequest.R | 4 ++++
sdk/R/tests/testthat/fakes/FakeRESTService.R | 4 ++++
sdk/R/tests/testthat/test-ArvadosFile.R | 4 ++++
sdk/R/tests/testthat/test-Collection.R | 4 ++++
sdk/R/tests/testthat/test-CollectionTree.R | 4 ++++
sdk/R/tests/testthat/test-HttpParser.R | 4 ++++
sdk/R/tests/testthat/test-HttpRequest.R | 4 ++++
sdk/R/tests/testthat/test-RESTService.R | 4 ++++
sdk/R/tests/testthat/test-Subcollection.R | 4 ++++
sdk/R/tests/testthat/test-util.R | 4 ++++
27 files changed, 105 insertions(+), 1 deletion(-)
via c856e47c2a25dc6979ea07f2c3942687687c833a (commit)
via c0d0ff3208b27c7db879421053892b977ff7b0f1 (commit)
from 07e961b0d36fe51b967d271187b7c7fbc25d42b5 (commit)
Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit c856e47c2a25dc6979ea07f2c3942687687c833a
Author: Ward Vandewege <wvandewege at veritasgenetics.com>
Date: Wed May 23 22:17:25 2018 -0400
2411: add copyright headers to our R files.
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege at veritasgenetics.com>
diff --git a/sdk/R/R/Arvados.R b/sdk/R/R/Arvados.R
index 644725c..0ec2d11 100644
--- a/sdk/R/R/Arvados.R
+++ b/sdk/R/R/Arvados.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
#' users.get
#'
#' users.get is a method defined in Arvados class.
diff --git a/sdk/R/R/ArvadosFile.R b/sdk/R/R/ArvadosFile.R
index e28ba96..8f73783 100644
--- a/sdk/R/R/ArvadosFile.R
+++ b/sdk/R/R/ArvadosFile.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("./R/util.R")
#' ArvadosFile
diff --git a/sdk/R/R/Collection.R b/sdk/R/R/Collection.R
index fad452a..e23da13 100644
--- a/sdk/R/R/Collection.R
+++ b/sdk/R/R/Collection.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("./R/Subcollection.R")
source("./R/ArvadosFile.R")
source("./R/RESTService.R")
diff --git a/sdk/R/R/CollectionTree.R b/sdk/R/R/CollectionTree.R
index 91e4ec8..8686f88 100644
--- a/sdk/R/R/CollectionTree.R
+++ b/sdk/R/R/CollectionTree.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("./R/Subcollection.R")
source("./R/ArvadosFile.R")
source("./R/util.R")
diff --git a/sdk/R/R/HttpParser.R b/sdk/R/R/HttpParser.R
index 5df8287..8ce68f3 100644
--- a/sdk/R/R/HttpParser.R
+++ b/sdk/R/R/HttpParser.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
HttpParser <- R6::R6Class(
"HttrParser",
diff --git a/sdk/R/R/HttpRequest.R b/sdk/R/R/HttpRequest.R
index bc6b4d4..95dd375 100644
--- a/sdk/R/R/HttpRequest.R
+++ b/sdk/R/R/HttpRequest.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("./R/util.R")
HttpRequest <- R6::R6Class(
diff --git a/sdk/R/R/RESTService.R b/sdk/R/R/RESTService.R
index c215cf3..ac65d0d 100644
--- a/sdk/R/R/RESTService.R
+++ b/sdk/R/R/RESTService.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
RESTService <- R6::R6Class(
"RESTService",
diff --git a/sdk/R/R/Subcollection.R b/sdk/R/R/Subcollection.R
index b3b01f8..60714a4 100644
--- a/sdk/R/R/Subcollection.R
+++ b/sdk/R/R/Subcollection.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("./R/util.R")
#' Subcollection
diff --git a/sdk/R/R/autoGenAPI.R b/sdk/R/R/autoGenAPI.R
index 6db28f9..3e8c2fa 100644
--- a/sdk/R/R/autoGenAPI.R
+++ b/sdk/R/R/autoGenAPI.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
getAPIDocument <- function(){
url <- "https://4xphq.arvadosapi.com/discovery/v1/apis/arvados/v1/rest"
serverResponse <- httr::RETRY("GET", url = url)
diff --git a/sdk/R/R/util.R b/sdk/R/R/util.R
index 57dd75f..f796cb7 100644
--- a/sdk/R/R/util.R
+++ b/sdk/R/R/util.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
#' listAll
#'
#' List all resources even if the number of items is greater than maximum API limit.
diff --git a/sdk/R/createDoc.R b/sdk/R/createDoc.R
index 73e088e..5decab9 100644
--- a/sdk/R/createDoc.R
+++ b/sdk/R/createDoc.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
#Run script with $Rscript createDoc.R input.Rmd output.html
require(knitr) # required for knitting from rmd to md
diff --git a/sdk/R/install_deps.R b/sdk/R/install_deps.R
index 5314c86..593129b 100644
--- a/sdk/R/install_deps.R
+++ b/sdk/R/install_deps.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
options(repos=structure(c(CRAN="http://cran.wustl.edu/")))
if (!requireNamespace("devtools")) {
install.packages("devtools")
diff --git a/sdk/R/run_test.R b/sdk/R/run_test.R
index 1f8931d..156dde1 100644
--- a/sdk/R/run_test.R
+++ b/sdk/R/run_test.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
results <- devtools::test()
any_error <- any(as.data.frame(results)$error)
if (any_error) {
diff --git a/sdk/R/tests/testthat.R b/sdk/R/tests/testthat.R
index 18ef411..9ca4f86 100644
--- a/sdk/R/tests/testthat.R
+++ b/sdk/R/tests/testthat.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
library(testthat)
library(ArvadosR)
diff --git a/sdk/R/tests/testthat/fakes/FakeArvados.R b/sdk/R/tests/testthat/fakes/FakeArvados.R
index 5886ff7..4fcfd6c 100644
--- a/sdk/R/tests/testthat/fakes/FakeArvados.R
+++ b/sdk/R/tests/testthat/fakes/FakeArvados.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
FakeArvados <- R6::R6Class(
"FakeArvados",
diff --git a/sdk/R/tests/testthat/fakes/FakeHttpParser.R b/sdk/R/tests/testthat/fakes/FakeHttpParser.R
index 865234d..c97572c 100644
--- a/sdk/R/tests/testthat/fakes/FakeHttpParser.R
+++ b/sdk/R/tests/testthat/fakes/FakeHttpParser.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
FakeHttpParser <- R6::R6Class(
"FakeHttrParser",
diff --git a/sdk/R/tests/testthat/fakes/FakeHttpRequest.R b/sdk/R/tests/testthat/fakes/FakeHttpRequest.R
index c4dbc66..2633abd 100644
--- a/sdk/R/tests/testthat/fakes/FakeHttpRequest.R
+++ b/sdk/R/tests/testthat/fakes/FakeHttpRequest.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
FakeHttpRequest <- R6::R6Class(
"FakeHttpRequest",
diff --git a/sdk/R/tests/testthat/fakes/FakeRESTService.R b/sdk/R/tests/testthat/fakes/FakeRESTService.R
index d370e87..08e8717 100644
--- a/sdk/R/tests/testthat/fakes/FakeRESTService.R
+++ b/sdk/R/tests/testthat/fakes/FakeRESTService.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
FakeRESTService <- R6::R6Class(
"FakeRESTService",
diff --git a/sdk/R/tests/testthat/test-ArvadosFile.R b/sdk/R/tests/testthat/test-ArvadosFile.R
index 0c1db1a..fb14888 100644
--- a/sdk/R/tests/testthat/test-ArvadosFile.R
+++ b/sdk/R/tests/testthat/test-ArvadosFile.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("fakes/FakeRESTService.R")
context("ArvadosFile")
diff --git a/sdk/R/tests/testthat/test-Collection.R b/sdk/R/tests/testthat/test-Collection.R
index ec00ca3..c3c7091 100644
--- a/sdk/R/tests/testthat/test-Collection.R
+++ b/sdk/R/tests/testthat/test-Collection.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("fakes/FakeRESTService.R")
context("Collection")
diff --git a/sdk/R/tests/testthat/test-CollectionTree.R b/sdk/R/tests/testthat/test-CollectionTree.R
index 42a54bf..5c8a405 100644
--- a/sdk/R/tests/testthat/test-CollectionTree.R
+++ b/sdk/R/tests/testthat/test-CollectionTree.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
context("CollectionTree")
test_that("constructor creates file tree from character array properly", {
diff --git a/sdk/R/tests/testthat/test-HttpParser.R b/sdk/R/tests/testthat/test-HttpParser.R
index b286212..a119d88 100644
--- a/sdk/R/tests/testthat/test-HttpParser.R
+++ b/sdk/R/tests/testthat/test-HttpParser.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
context("Http Parser")
diff --git a/sdk/R/tests/testthat/test-HttpRequest.R b/sdk/R/tests/testthat/test-HttpRequest.R
index 5c2fb60..5ad8aa0 100644
--- a/sdk/R/tests/testthat/test-HttpRequest.R
+++ b/sdk/R/tests/testthat/test-HttpRequest.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
context("Http Request")
diff --git a/sdk/R/tests/testthat/test-RESTService.R b/sdk/R/tests/testthat/test-RESTService.R
index 898e59e..859b618 100644
--- a/sdk/R/tests/testthat/test-RESTService.R
+++ b/sdk/R/tests/testthat/test-RESTService.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("fakes/FakeArvados.R")
source("fakes/FakeHttpRequest.R")
source("fakes/FakeHttpParser.R")
diff --git a/sdk/R/tests/testthat/test-Subcollection.R b/sdk/R/tests/testthat/test-Subcollection.R
index b2b0bc9..e025586 100644
--- a/sdk/R/tests/testthat/test-Subcollection.R
+++ b/sdk/R/tests/testthat/test-Subcollection.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
source("fakes/FakeRESTService.R")
context("Subcollection")
diff --git a/sdk/R/tests/testthat/test-util.R b/sdk/R/tests/testthat/test-util.R
index ea09151..9f5e07c 100644
--- a/sdk/R/tests/testthat/test-util.R
+++ b/sdk/R/tests/testthat/test-util.R
@@ -1,3 +1,7 @@
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: Apache-2.0
+
context("Utility function")
test_that("listAll always returns all resource items from server", {
commit c0d0ff3208b27c7db879421053892b977ff7b0f1
Author: Ward Vandewege <wvandewege at veritasgenetics.com>
Date: Wed May 23 22:16:58 2018 -0400
2411: Add support for R source files to build/check-copyright-notices
refs #2411
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege at veritasgenetics.com>
diff --git a/build/check-copyright-notices b/build/check-copyright-notices
index 1c24669..2a40b50 100755
--- a/build/check-copyright-notices
+++ b/build/check-copyright-notices
@@ -96,7 +96,7 @@ do
| */nodemanager/doc/*.cfg \
| */nodemanager/tests/fake*.cfg.template \
| */nginx.conf \
- | build/build.list)
+ | build/build.list | *.R)
fixer=fixer
cc="#"
;;
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