[ARVADOS] updated: 1.1.4-251-g25cdd13

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Summary of changes:
 sdk/cwl/arvados_cwl/arvworkflow.py | 5 +++++
 1 file changed, 5 insertions(+)

       via  25cdd138fccebc90086e0106e8b71273a990acf4 (commit)
      from  71c1fb04107bb3d9411dd9f016cd0bf1b40f0e86 (commit)

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commit 25cdd138fccebc90086e0106e8b71273a990acf4
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date:   Thu May 10 11:03:29 2018 -0400

    12256: Comments about workflow references / extra files.
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>

diff --git a/sdk/cwl/arvados_cwl/arvworkflow.py b/sdk/cwl/arvados_cwl/arvworkflow.py
index 05d4648..6f731fd 100644
--- a/sdk/cwl/arvados_cwl/arvworkflow.py
+++ b/sdk/cwl/arvados_cwl/arvworkflow.py
@@ -182,6 +182,8 @@ class ArvadosWorkflow(Workflow):
                                         uri,
                                         False)
 
+                    # Discover files/directories referenced by the
+                    # workflow (mainly "default" values)
                     visit_class(packed, ("File", "Directory"), self.wf_reffiles.append)
 
 
@@ -216,6 +218,9 @@ class ArvadosWorkflow(Workflow):
                                  "/keep/%s/%s",
                                  **kwargs)
 
+                # For containers API, we need to make sure any extra
+                # referenced files (ie referenced by the workflow but
+                # not in the inputs) are included in the mounts.
                 kwargs["extra_reffiles"] = copy.deepcopy(self.wf_reffiles)
 
                 def keepmount(obj):

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