[ARVADOS] updated: 1.1.4-221-g524c200

[Git user]

Summary of changes:
 build/build.list                                   |  4 +-
 sdk/cwl/arvados_cwl/__init__.py                    | 23 +++---
 sdk/cwl/arvados_cwl/arvcontainer.py                |  7 --
 sdk/cwl/arvados_cwl/arvjob.py                      |  7 --
 sdk/cwl/arvados_cwl/arvtool.py                     |  7 ++
 sdk/cwl/arvados_cwl/fsaccess.py                    | 10 ++-
 sdk/cwl/arvados_cwl/runner.py                      | 94 ++++++++++++++--------
 sdk/cwl/setup.py                                   |  4 +-
 sdk/cwl/tests/arvados-tests.sh                     |  3 +
 sdk/cwl/tests/arvados-tests.yml                    | 10 +++
 sdk/cwl/tests/secondaryFiles/example1.cwl          | 20 +++++
 sdk/cwl/tests/secondaryFiles/example3.cwl          | 12 +++
 .../cwl/tests/secondaryFiles/hello.txt             |  0
 .../cwl/tests/secondaryFiles/hello.txt.idx         |  0
 sdk/cwl/tests/secondaryFiles/inp3.yml              |  3 +
 sdk/cwl/tests/test_job.py                          |  1 -
 16 files changed, 141 insertions(+), 64 deletions(-)
 create mode 100644 sdk/cwl/tests/secondaryFiles/example1.cwl
 create mode 100644 sdk/cwl/tests/secondaryFiles/example3.cwl
 copy tools/crunchstat-summary/tests/__init__.py => sdk/cwl/tests/secondaryFiles/hello.txt (100%)
 copy tools/crunchstat-summary/tests/__init__.py => sdk/cwl/tests/secondaryFiles/hello.txt.idx (100%)
 create mode 100644 sdk/cwl/tests/secondaryFiles/inp3.yml

       via  524c20020594ba67a2a822eccb632f8a5f5dc3ce (commit)
       via  c4c8392e3bcd8f7e721bc423f0fed42475b4ab96 (commit)
       via  24ebcf6675fa383b38ba6e594d553a2d2526eab7 (commit)
       via  cb03587052027b65d99eb89046c41d8c9c5227bc (commit)
       via  f63bd7af0faad9d0daa8d183d4b722c4bb42f383 (commit)
       via  32d79def3a400de6fbe4cd02a8c71643238d867d (commit)
       via  6e098e8fde75fcec7e5be1a4873029f394bd055a (commit)
       via  4e9537b3a6c8dcd796b3e7d29630fe9ef2a9204c (commit)
       via  825be8d284ef8f6bef2c40aea684dff3273c1460 (commit)
       via  275e09f9ff0550ea1318939448bb1361e46346b1 (commit)
       via  ca8ee6ed722b50b2e571b895ee5ee290c18090f6 (commit)
       via  9c23603a2d852a563388c4b616fd7f1d01cbf5f1 (commit)
      from  0d50e82dd2255104e60c0882045b54774e1be380 (commit)

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commit 524c20020594ba67a2a822eccb632f8a5f5dc3ce
Merge: 0d50e82 c4c8392
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date:   Mon May 7 09:49:30 2018 -0400

    Merge branch '13365-default-secondaryFiles' refs #13365
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>


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