[ARVADOS] updated: 1.1.4-191-gf691b3f
Git user
git at public.curoverse.com
Thu May 3 10:21:45 EDT 2018
Summary of changes:
.../app/controllers/work_units_controller.rb | 7 +-
.../workbench/test/integration/collections_test.rb | 2 +-
build/build.list | 68 +--
build/package-build-dockerfiles/Makefile | 2 +-
build/package-build-dockerfiles/centos7/Dockerfile | 2 +-
build/package-build-dockerfiles/debian8/Dockerfile | 2 +-
build/package-build-dockerfiles/debian9/Dockerfile | 2 +-
.../ubuntu1404/Dockerfile | 4 +-
.../ubuntu1604/Dockerfile | 2 +-
.../package-test-dockerfiles/ubuntu1404/Dockerfile | 4 +-
build/package-testing/test-packages-ubuntu1204.sh | 1 -
build/run-build-packages-one-target.sh | 9 +-
build/run-build-packages.sh | 52 ---
build/run-tests.sh | 4 +-
doc/Rakefile | 2 +-
doc/_config.yml | 61 +--
doc/_includes/_events_py.liquid | 18 -
doc/_includes/_example_sdk_go_imports.liquid | 10 -
doc/_includes/_navbar_top.liquid | 2 +
doc/_layouts/default.html.liquid | 1 +
doc/admin/change-account-owner.html.textile.liquid | 41 --
doc/admin/index.html.textile.liquid | 13 +
doc/admin/merge-remote-account.html.textile.liquid | 4 +-
doc/admin/upgrading.html.textile.liquid | 129 ++++++
doc/api/execution.html.textile.liquid | 6 +-
doc/api/permission-model.html.textile.liquid | 4 +-
doc/api/storage.html.textile.liquid | 8 +-
doc/architecture/Arvados_arch.odg | Bin 0 -> 14997 bytes
doc/architecture/index.html.textile.liquid | 59 +++
doc/css/images.css | 3 +
doc/images/Arvados_arch.svg | 514 +++++++++++++++++++++
doc/index.html.liquid | 31 +-
doc/install/cheat_sheet.html.textile.liquid | 4 +-
...nstall-manual-prerequisites.html.textile.liquid | 4 +
doc/install/install-postgresql.html.textile.liquid | 12 +-
doc/install/migrate-docker19.html.textile.liquid | 4 +-
doc/sdk/go/index.html.textile.liquid | 7 +-
.../crunch-utility-libraries.html.textile.liquid | 4 +-
doc/sdk/python/events.html.textile.liquid | 18 +-
doc/user/index.html.textile.liquid | 3 -
.../topics/arvados-sync-groups.html.textile.liquid | 6 +-
.../tutorial-trait-search.html.textile.liquid | 12 +-
sdk/R/README.Rmd | 342 +++++++-------
sdk/cwl/tests/arvados-tests.yml | 1 +
sdk/go/arvados/client.go | 13 +-
sdk/go/arvados/collection.go | 31 +-
sdk/go/arvados/fs_site.go | 13 +-
sdk/go/arvados/fs_site_test.go | 21 +-
sdk/go/arvadostest/fixtures.go | 1 +
sdk/go/arvadostest/run_servers.go | 14 +-
.../arvados/v1/collections_controller.rb | 14 +-
services/crunch-dispatch-slurm/squeue.go | 3 +
services/crunch-run/crunchrun_test.go | 4 +
services/keep-balance/balance.go | 422 +++++++++++------
services/keep-balance/balance_run_test.go | 12 +-
services/keep-balance/balance_test.go | 202 ++++++--
services/keep-balance/block_state.go | 38 +-
services/keep-balance/change_set.go | 20 +-
services/keep-balance/change_set_test.go | 11 +-
services/keep-web/cadaver_test.go | 2 +
services/keep-web/handler.go | 17 +-
services/keep-web/handler_test.go | 36 +-
services/keepstore/handlers.go | 2 +-
services/login-sync/test/test_add_user.rb | 7 +-
services/nodemanager/tests/integration_test.py | 14 +-
.../tests/test_computenode_dispatch_slurm.py | 12 +
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 2 +-
.../crunchstat_summary/reader.py | 5 +-
68 files changed, 1718 insertions(+), 682 deletions(-)
delete mode 120000 build/package-testing/test-packages-ubuntu1204.sh
delete mode 100644 doc/_includes/_events_py.liquid
delete mode 100644 doc/_includes/_example_sdk_go_imports.liquid
delete mode 100644 doc/admin/change-account-owner.html.textile.liquid
create mode 100644 doc/admin/index.html.textile.liquid
create mode 100644 doc/admin/upgrading.html.textile.liquid
create mode 100644 doc/architecture/Arvados_arch.odg
create mode 100644 doc/architecture/index.html.textile.liquid
create mode 100644 doc/css/images.css
create mode 100644 doc/images/Arvados_arch.svg
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commit f691b3f7dfba6a337504211f1db44a980586afdd
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Thu May 3 10:21:05 2018 -0400
12167: Generate a new request ID if caller explicitly uses "".
Skip invoking unique ID generator if ID is already set.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
diff --git a/sdk/go/arvados/client.go b/sdk/go/arvados/client.go
index ce2c5ae..cca9f9b 100644
--- a/sdk/go/arvados/client.go
+++ b/sdk/go/arvados/client.go
@@ -106,15 +106,16 @@ func (c *Client) Do(req *http.Request) (*http.Response, error) {
req.Header.Add("Authorization", "OAuth2 "+c.AuthToken)
}
- reqid, ok := c.context().Value(contextKeyRequestID).(string)
- if !ok {
- reqid = reqIDGen.Next()
- }
if req.Header.Get("X-Request-Id") == "" {
+ reqid, _ := c.context().Value(contextKeyRequestID).(string)
+ if reqid == "" {
+ reqid = reqIDGen.Next()
+ }
if req.Header == nil {
- req.Header = http.Header{}
+ req.Header = http.Header{"X-Request-Id": {reqid}}
+ } else {
+ req.Header.Set("X-Request-Id", reqid)
}
- req.Header.Set("X-Request-Id", reqid)
}
return c.httpClient().Do(req)
}
commit 3e1c43866e5b523c3f1d273c25942ad56dc66d3f
Merge: 7d96319 dc0dae1
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Thu May 3 10:10:11 2018 -0400
12167: Merge branch 'master'
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
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