[ARVADOS] updated: 1.1.4-533-g4a2dc82a1
Git user
git at public.curoverse.com
Fri Jun 29 16:48:54 EDT 2018
Summary of changes:
apps/workbench/test/integration_helper.rb | 2 +
apps/workbench/test/test_helper.rb | 30 +--
build/build.list | 2 +-
build/libcloud-pin.sh | 4 +-
build/run-build-packages.sh | 30 ++-
build/run-library.sh | 5 +-
build/run-tests.sh | 43 +++-
cmd/arvados-client/cmd.go | 25 +-
.../arvados-server/arvados-controller.service | 7 +-
cmd/arvados-server/cmd.go | 27 ++
doc/_config.yml | 8 +
doc/admin/activation.html.textile.liquid | 229 +++++++++++++++++
doc/admin/spot-instances.html.textile.liquid | 78 ++++++
doc/admin/storage-classes.html.textile.liquid | 47 ++++
doc/api/methods.html.textile.liquid | 2 +-
doc/api/methods/collections.html.textile.liquid | 1 +
.../methods/container_requests.html.textile.liquid | 2 +-
doc/api/methods/groups.html.textile.liquid | 1 +
doc/api/methods/links.html.textile.liquid | 2 +-
doc/api/methods/nodes.html.textile.liquid | 3 +-
doc/api/tokens.html.textile.liquid | 4 +
.../arvados-on-kubernetes-GKE.html.textile.liquid | 62 +++++
...ados-on-kubernetes-minikube.html.textile.liquid | 34 +++
.../arvados-on-kubernetes.html.textile.liquid | 133 ++++++++++
...onfigure-azure-blob-storage.html.textile.liquid | 86 +++++--
.../configure-fs-storage.html.textile.liquid | 56 ++++
...configure-s3-object-storage.html.textile.liquid | 112 ++++++++
doc/install/index.html.textile.liquid | 20 +-
doc/install/install-keepstore.html.textile.liquid | 250 ++++++++++--------
.../topics/storage-classes.html.textile.liquid | 53 ++++
lib/cmd/cmd.go | 27 +-
lib/cmd/cmd_test.go | 12 +-
lib/controller/cmd.go | 17 ++
lib/controller/handler.go | 141 ++++++++++
lib/controller/handler_test.go | 122 +++++++++
lib/dispatchcloud/node_size.go | 34 ++-
lib/dispatchcloud/node_size_test.go | 76 ++++--
lib/service/cmd.go | 120 +++++++++
sdk/cwl/arvados_cwl/__init__.py | 248 ++++++++++--------
sdk/cwl/arvados_cwl/arvcontainer.py | 86 ++++---
sdk/cwl/arvados_cwl/arvjob.py | 44 ++--
sdk/cwl/arvados_cwl/arvtool.py | 73 +++---
sdk/cwl/arvados_cwl/arvworkflow.py | 53 ++--
sdk/cwl/arvados_cwl/context.py | 28 ++
sdk/cwl/arvados_cwl/crunch_script.py | 19 +-
sdk/cwl/arvados_cwl/done.py | 10 +-
sdk/cwl/arvados_cwl/http.py | 151 +++++++++++
sdk/cwl/arvados_cwl/pathmapper.py | 29 +--
sdk/cwl/arvados_cwl/runner.py | 21 +-
sdk/cwl/arvados_version.py | 19 +-
sdk/cwl/setup.py | 8 +-
sdk/cwl/tests/test_container.py | 125 +++++----
sdk/cwl/tests/test_http.py | 286 +++++++++++++++++++++
sdk/cwl/tests/test_job.py | 141 ++++++----
sdk/cwl/tests/test_make_output.py | 4 +-
sdk/cwl/tests/test_pathmapper.py | 19 +-
sdk/cwl/tests/test_submit.py | 104 +++++++-
sdk/go/arvados/byte_size.go | 91 +++++++
sdk/go/arvados/byte_size_test.go | 70 +++++
sdk/go/arvados/config.go | 114 ++++++--
sdk/go/arvados/config_test.go | 37 +++
sdk/go/arvados/container.go | 3 +-
sdk/go/health/aggregator.go | 16 +-
sdk/go/health/aggregator_test.go | 14 +-
sdk/go/httpserver/error.go | 21 ++
sdk/go/httpserver/logger.go | 30 ++-
sdk/go/httpserver/logger_test.go | 14 +-
sdk/go/keepclient/keepclient.go | 1 +
sdk/go/keepclient/keepclient_test.go | 23 +-
sdk/go/keepclient/support.go | 3 +
sdk/python/arvados/collection.py | 90 ++++++-
sdk/python/arvados/commands/run.py | 11 +-
sdk/python/setup.py | 2 +-
sdk/python/tests/nginx.conf | 38 ++-
sdk/python/tests/run_test_server.py | 85 +++++-
sdk/python/tests/test_collections.py | 38 ++-
.../arvados/v1/containers_controller.rb | 6 +-
.../api/app/models/api_client_authorization.rb | 3 +-
services/api/app/models/container.rb | 8 +-
services/api/app/models/container_request.rb | 36 ++-
services/api/app/models/group.rb | 3 +
services/api/app/models/user.rb | 3 +-
services/api/config/application.default.yml | 21 +-
.../migrate/20180607175050_properties_to_jsonb.rb | 32 +++
.../20180608123145_add_properties_to_groups.rb | 18 ++
services/api/db/structure.sql | 53 +++-
services/api/lib/update_priority.rb | 57 ++++
services/api/lib/whitelist_update.rb | 2 +-
services/api/test/integration/remote_user_test.rb | 33 +++
services/api/test/unit/arvados_model_test.rb | 2 +-
services/api/test/unit/container_request_test.rb | 112 ++++++++
services/api/test/unit/update_priority_test.rb | 30 +++
services/api/test/unit/user_test.rb | 4 +-
.../crunch-dispatch-slurm/crunch-dispatch-slurm.go | 18 +-
.../crunch-dispatch-slurm_test.go | 22 +-
services/fuse/setup.py | 2 +-
services/health/main.go | 2 +-
services/keep-balance/balance.go | 162 +++++++++---
services/keep-balance/balance_test.go | 206 ++++++++++++++-
services/keep-web/server.go | 2 +-
services/keepproxy/keepproxy.go | 11 +-
services/keepproxy/keepproxy_test.go | 46 +++-
services/keepstore/config.go | 3 +-
services/keepstore/handlers.go | 2 +-
services/keepstore/s3_volume.go | 4 +-
.../nodemanager/arvnodeman/computenode/__init__.py | 2 +-
.../arvnodeman/computenode/dispatch/__init__.py | 7 +-
.../arvnodeman/computenode/driver/__init__.py | 2 +-
.../arvnodeman/computenode/driver/azure.py | 5 +-
.../arvnodeman/computenode/driver/ec2.py | 9 +
.../arvnodeman/computenode/driver/gce.py | 22 +-
services/nodemanager/arvnodeman/config.py | 46 +++-
services/nodemanager/arvnodeman/daemon.py | 6 +-
services/nodemanager/arvnodeman/jobqueue.py | 34 ++-
services/nodemanager/arvnodeman/launcher.py | 4 +-
services/nodemanager/arvnodeman/nodelist.py | 4 +-
.../nodemanager/arvnodeman/test/fake_driver.py | 19 +-
services/nodemanager/doc/ec2.example.cfg | 12 +
services/nodemanager/setup.py | 7 +-
services/nodemanager/tests/fake_azure.cfg.template | 8 +-
services/nodemanager/tests/fake_ec2.cfg.template | 8 +-
services/nodemanager/tests/fake_gce.cfg.template | 8 +-
services/nodemanager/tests/integration_test.py | 38 +--
services/nodemanager/tests/test_computenode.py | 6 +
.../nodemanager/tests/test_computenode_dispatch.py | 9 +
.../nodemanager/tests/test_computenode_driver.py | 2 +-
.../tests/test_computenode_driver_azure.py | 23 +-
.../tests/test_computenode_driver_ec2.py | 27 +-
.../tests/test_computenode_driver_gce.py | 11 +
services/nodemanager/tests/test_config.py | 24 +-
services/nodemanager/tests/test_daemon.py | 44 ++--
services/nodemanager/tests/test_failure.py | 5 +-
services/nodemanager/tests/test_nodelist.py | 1 +
services/nodemanager/tests/testutil.py | 4 +-
134 files changed, 4419 insertions(+), 957 deletions(-)
copy services/health/arvados-health.service => cmd/arvados-server/arvados-controller.service (83%)
create mode 100644 cmd/arvados-server/cmd.go
create mode 100644 doc/admin/activation.html.textile.liquid
create mode 100644 doc/admin/spot-instances.html.textile.liquid
create mode 100644 doc/admin/storage-classes.html.textile.liquid
create mode 100644 doc/install/arvados-on-kubernetes-GKE.html.textile.liquid
create mode 100644 doc/install/arvados-on-kubernetes-minikube.html.textile.liquid
create mode 100644 doc/install/arvados-on-kubernetes.html.textile.liquid
create mode 100644 doc/install/configure-fs-storage.html.textile.liquid
create mode 100644 doc/install/configure-s3-object-storage.html.textile.liquid
create mode 100644 doc/user/topics/storage-classes.html.textile.liquid
create mode 100644 lib/controller/cmd.go
create mode 100644 lib/controller/handler.go
create mode 100644 lib/controller/handler_test.go
create mode 100644 lib/service/cmd.go
create mode 100644 sdk/cwl/arvados_cwl/context.py
create mode 100644 sdk/cwl/arvados_cwl/http.py
create mode 100644 sdk/cwl/tests/test_http.py
create mode 100644 sdk/go/arvados/byte_size.go
create mode 100644 sdk/go/arvados/byte_size_test.go
create mode 100644 sdk/go/arvados/config_test.go
create mode 100644 sdk/go/httpserver/error.go
create mode 100644 services/api/db/migrate/20180607175050_properties_to_jsonb.rb
create mode 100644 services/api/db/migrate/20180608123145_add_properties_to_groups.rb
create mode 100644 services/api/lib/update_priority.rb
create mode 100644 services/api/test/unit/update_priority_test.rb
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commit 4a2dc82a1acce855151928abe0030e1dd7dbf728
Merge: 76a2c8a1e 9a9930ceb
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Fri Jun 29 16:48:33 2018 -0400
13547: Merge branch 'master' into 13547-respect-insecure-flag-when-talking-ssl-to-keep
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
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