[ARVADOS] updated: 1.1.4-716-gcd5cd1855
Git user
git at public.curoverse.com
Mon Jul 30 10:36:30 EDT 2018
Summary of changes:
doc/user/composer/composer.html.textile.liquid | 2 +-
doc/user/tutorials/writing-cwl-workflow.html.textile.liquid | 6 +++++-
2 files changed, 6 insertions(+), 2 deletions(-)
via cd5cd1855c02319ca31410943c4d944133294b17 (commit)
from 676d3522be04f774ba3a7db38d88b284252e0408 (commit)
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commit cd5cd1855c02319ca31410943c4d944133294b17
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date: Mon Jul 30 10:35:37 2018 -0400
13690: Add/fix links
* Fix CWL user guide link
* Link from "Developing Workflows" to Composer tutorial
* More detail about what goes in "Docker Repository" field
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>
diff --git a/doc/user/composer/composer.html.textile.liquid b/doc/user/composer/composer.html.textile.liquid
index 821fd3448..e8ef0b688 100644
--- a/doc/user/composer/composer.html.textile.liquid
+++ b/doc/user/composer/composer.html.textile.liquid
@@ -48,7 +48,7 @@ h3. 6. Create a new Command Line Tool
h3. 7. Set Docker image, base command, and input port for "sort" tool
-You may need to "upload a Docker image":{{site.baseurl}}/user/topics/arv-docker.html (@arv-keepdocker debian:8@)
+The "Docker Repository" is the name:tag of a "Docker image uploaded Arvados.":{{site.baseurl}}/user/topics/arv-docker.html (Use @arv-keepdocker --pull debian:8@) You can also find prepackaged bioinformatics tools on various sites, such as http://dockstore.org and http://biocontainers.pro/ .
!(screenshot)c6.png!
diff --git a/doc/user/tutorials/writing-cwl-workflow.html.textile.liquid b/doc/user/tutorials/writing-cwl-workflow.html.textile.liquid
index 6cd7ee151..2f1f80ca0 100644
--- a/doc/user/tutorials/writing-cwl-workflow.html.textile.liquid
+++ b/doc/user/tutorials/writing-cwl-workflow.html.textile.liquid
@@ -15,10 +15,14 @@ SPDX-License-Identifier: CC-BY-SA-3.0
h2. Developing workflows
-For an introduction and and detailed documentation about writing CWL, see the "CWL User Guide":http://commonwl.org/v1.0/UserGuide.html and the "CWL Specification":http://commonwl.org/v1.0 .
+For an introduction and and detailed documentation about writing CWL, see the "CWL User Guide":https://www.commonwl.org/user_guide and the "CWL Specification":http://commonwl.org/v1.0 .
See "Best Practices for writing CWL":{{site.baseurl}}/user/cwl/cwl-style.html and "Arvados CWL Extensions":{{site.baseurl}}/user/cwl/cwl-extensions.html for additional information about using CWL on Arvados.
+h2. Using Composer
+
+You can create new workflows in the browser using "Arvados Composer":{{site.baseurl}}/user/composer/composer.html
+
h2. Registering a workflow to use in Workbench
Use @--create-workflow@ to register a CWL workflow with Arvados. This enables you to share workflows with other Arvados users, and run them by clicking the <span class="btn btn-sm btn-primary"><i class="fa fa-fw fa-gear"></i> Run a process...</span> button on the Workbench Dashboard and on the command line by UUID.
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