[ARVADOS] updated: 1.1.4-689-g711711827
Git user
git at public.curoverse.com
Fri Jul 20 10:26:13 EDT 2018
Summary of changes:
README.md | 4 +-
apps/workbench/Gemfile.lock | 4 +-
build/run-library.sh | 3 +-
doc/_config.yml | 18 +-
doc/_includes/_install_compute_docker.liquid | 27 +
doc/_includes/_skip_sso_server_install.liquid | 12 -
...opy_pipeline_from_curoverse.html.textile.liquid | 20 +-
.../create-standard-objects.html.textile.liquid | 84 -
.../install-slurm.html.textile.liquid | 2 -
doc/install/index.html.textile.liquid | 16 +-
.../install-arv-git-httpd.html.textile.liquid | 45 +
doc/install/install-components.html.textile.liquid | 28 +
.../install-keep-balance.html.textile.liquid | 7 +-
doc/install/install-keepproxy.html.textile.liquid | 23 +-
doc/install/install-keepstore.html.textile.liquid | 39 +-
...nstall-manual-prerequisites.html.textile.liquid | 8 +-
.../install-nodemanager.html.textile.liquid | 29 +-
.../firstpipeline.html.textile.liquid | 2 +-
doc/user/cwl/cwl-runner.html.textile.liquid | 10 +-
doc/user/topics/arv-copy.html.textile.liquid | 4 +-
.../running-external-program.html.textile.liquid | 4 +-
sdk/R/R/Arvados.R | 2796 ++++++++++----------
sdk/R/R/ArvadosFile.R | 20 +-
sdk/R/R/Collection.R | 22 +-
sdk/R/R/CollectionTree.R | 10 +-
sdk/R/R/HttpParser.R | 6 +-
sdk/R/R/HttpRequest.R | 15 +-
sdk/R/R/RESTService.R | 15 +-
sdk/R/R/Subcollection.R | 14 +-
sdk/R/R/autoGenAPI.R | 16 +-
sdk/R/tests/testthat/fakes/FakeHttpParser.R | 6 +-
sdk/R/tests/testthat/fakes/FakeHttpRequest.R | 29 +-
sdk/R/tests/testthat/fakes/FakeRESTService.R | 4 +-
sdk/R/tests/testthat/test-ArvadosFile.R | 46 +-
sdk/R/tests/testthat/test-Collection.R | 6 +-
sdk/R/tests/testthat/test-CollectionTree.R | 20 +-
sdk/R/tests/testthat/test-HttpParser.R | 10 +-
sdk/R/tests/testthat/test-HttpRequest.R | 85 +-
sdk/R/tests/testthat/test-RESTService.R | 99 +-
sdk/R/tests/testthat/test-Subcollection.R | 62 +-
sdk/R/tests/testthat/test-util.R | 20 +-
sdk/cli/arvados-cli.gemspec | 2 +-
sdk/go/dispatch/dispatch.go | 12 +-
sdk/go/httpserver/metrics.go | 129 +
services/api/Gemfile | 2 -
services/api/Gemfile.lock | 17 +-
services/api/config/initializers/oj_mimic_json.rb | 11 +
services/api/config/initializers/time_format.rb | 2 +
services/api/lib/safe_json.rb | 6 +
services/api/test/test_helper.rb | 2 +-
.../crunch-dispatch-slurm_test.go | 14 +-
services/crunch-dispatch-slurm/squeue.go | 24 +-
services/crunch-dispatch-slurm/squeue_test.go | 44 +
services/keep-web/doc.go | 6 +
services/keep-web/handler.go | 4 +
services/keep-web/handler_test.go | 5 +-
services/keep-web/server.go | 7 +-
services/keep-web/server_test.go | 72 +
services/keepproxy/keepproxy_test.go | 2 +-
services/keepstore/config.go | 64 -
services/keepstore/handlers.go | 12 +-
.../arvnodeman/computenode/dispatch/__init__.py | 24 +-
.../arvnodeman/computenode/driver/__init__.py | 8 +-
.../arvnodeman/computenode/driver/azure.py | 4 +-
.../arvnodeman/computenode/driver/dummy.py | 2 +-
.../arvnodeman/computenode/driver/ec2.py | 4 +-
.../arvnodeman/computenode/driver/gce.py | 5 +-
services/nodemanager/arvnodeman/config.py | 3 +-
services/nodemanager/arvnodeman/daemon.py | 69 +-
services/nodemanager/arvnodeman/jobqueue.py | 5 +-
services/nodemanager/arvnodeman/launcher.py | 3 +-
services/nodemanager/doc/azure.example.cfg | 10 +
services/nodemanager/doc/ec2.example.cfg | 9 +
services/nodemanager/doc/gce.example.cfg | 9 +
services/nodemanager/tests/integration_test.py | 5 +-
.../nodemanager/tests/test_computenode_dispatch.py | 14 +-
services/nodemanager/tests/test_daemon.py | 16 +
vendor/vendor.json | 26 +-
78 files changed, 2419 insertions(+), 1924 deletions(-)
delete mode 100644 doc/_includes/_skip_sso_server_install.liquid
delete mode 100644 doc/install/create-standard-objects.html.textile.liquid
create mode 100644 doc/install/install-components.html.textile.liquid
create mode 100644 sdk/go/httpserver/metrics.go
create mode 100644 services/api/config/initializers/oj_mimic_json.rb
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Those revisions listed above that are new to this repository have
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commit 711711827bb0c3564836707bb7d4453c60c6a98c
Merge: 66fc74001 8df5b7459
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Fri Jul 20 10:25:45 2018 -0400
13493: Merge branch 'master' into 13493-federation-proxy
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
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