[ARVADOS] updated: 1.1.4-661-g0985649e0
Git user
git at public.curoverse.com
Thu Jul 19 15:58:39 EDT 2018
Summary of changes:
README.md | 4 +---
doc/_includes/_skip_sso_server_install.liquid | 12 ------------
.../copy_pipeline_from_curoverse.html.textile.liquid | 20 ++++++++++----------
doc/install/index.html.textile.liquid | 4 ++--
.../firstpipeline.html.textile.liquid | 2 +-
doc/user/cwl/cwl-runner.html.textile.liquid | 10 +++++-----
doc/user/topics/arv-copy.html.textile.liquid | 4 ++--
.../running-external-program.html.textile.liquid | 4 ++--
8 files changed, 23 insertions(+), 37 deletions(-)
delete mode 100644 doc/_includes/_skip_sso_server_install.liquid
via 0985649e03f3112be396fb67ee7507ff47a37571 (commit)
from 2f4a5bef7433097558b89844c84d4cc40a447c53 (commit)
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commit 0985649e03f3112be396fb67ee7507ff47a37571
Author: Ward Vandewege <wvandewege at veritasgenetics.com>
Date: Thu Jul 19 15:55:18 2018 -0400
Reflect the new name and url for the public evaluation and trial instance,
Arvados Playground.
No issue #
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege at veritasgenetics.com>
diff --git a/README.md b/README.md
index c480ffda4..12fdd219f 100644
--- a/README.md
+++ b/README.md
@@ -19,9 +19,7 @@ Arvados consists of:
## Quick start
-Curoverse maintains an Arvados public cloud demo at
-[https://cloud.curoverse.com](https://cloud.curoverse.com). A Google account
-is required to log in.
+Veritas Genetics maintains a public installation of Arvados for evaluation and trial use, the [Arvados Playground](https://playground.arvados.org). A Google account is required to log in.
To try out Arvados on your local workstation, you can use Arvbox, which
provides Arvados components pre-installed in a Docker container (requires
diff --git a/doc/_includes/_skip_sso_server_install.liquid b/doc/_includes/_skip_sso_server_install.liquid
deleted file mode 100644
index eafa4ccba..000000000
--- a/doc/_includes/_skip_sso_server_install.liquid
+++ /dev/null
@@ -1,12 +0,0 @@
-{% comment %}
-Copyright (C) The Arvados Authors. All rights reserved.
-
-SPDX-License-Identifier: CC-BY-SA-3.0
-{% endcomment %}
-
-<div class="alert alert-block alert-info">
- <button type="button" class="close" data-dismiss="alert">×</button>
- <h4>Note!</h4>
- <p>The SSO server codebase currently uses OpenID 2.0 to talk to Google's authentication service. Google <a href="https://developers.google.com/accounts/docs/OpenID2">has deprecated that protocol</a>. This means that new clients will not be allowed to talk to Google's authentication services anymore over OpenID 2.0, and they will phase out the use of OpenID 2.0 completely in the coming monts. We are working on upgrading the SSO server codebase to a newer protocol. That work should be complete by the end of November 2014. In the mean time, anyone is free to use the existing Curoverse SSO server for any local Arvados installation. Instructions to do so are provided on the "API server":install-api-server.html page.</p>
- <p><strong>Recommendation: skip this step</strong></p>
-</div>
diff --git a/doc/install/copy_pipeline_from_curoverse.html.textile.liquid b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
index 4961a05b5..fa497c93d 100644
--- a/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
+++ b/doc/install/copy_pipeline_from_curoverse.html.textile.liquid
@@ -1,7 +1,7 @@
---
layout: default
navsection: installguide
-title: Copy pipeline from Curoverse cloud
+title: Copy pipeline from the Arvados Playground
...
{% comment %}
Copyright (C) The Arvados Authors. All rights reserved.
@@ -9,27 +9,27 @@ Copyright (C) The Arvados Authors. All rights reserved.
SPDX-License-Identifier: CC-BY-SA-3.0
{% endcomment %}
-This tutorial describes how to find and copy a publicly shared pipeline from Curoverse cloud. Please note that you can use similar steps to copy any template you can access from Curoverse cloud to your cluster.
+This tutorial describes how to find and copy a publicly shared pipeline from the Arvados Playground. Please note that you can use similar steps to copy any template you can access from the Arvados Playground to your cluster.
-h3. Access a public pipeline in Curoverse cloud using Workbench
+h3. Access a public pipeline in the Arvados Playground using Workbench
-Curoverse cloud provides access to some public data, which can be used to experience Arvados in action. Let's access a public pipeline and copy it to your cluster, so that you can run it in your environment.
+the Arvados Playground provides access to some public data, which can be used to experience Arvados in action. Let's access a public pipeline and copy it to your cluster, so that you can run it in your environment.
-Start by visiting the "*Curoverse public projects page*":https://cloud.curoverse.com/projects/public. This page lists all the publicly accessible projects in this arvados installation. Click on one of these projects to open it. We will use "*lobSTR v.3 (Public)*":https://cloud.curoverse.com/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq as the example in this tutorial.
+Start by visiting the "*Arvados Playground public projects page*":https://playground.arvados.org/projects/public. This page lists all the publicly accessible projects in this arvados installation. Click on one of these projects to open it. We will use "*lobSTR v.3 (Public)*":https://playground.arvados.org/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq as the example in this tutorial.
-Once in the "*lobSTR v.3 (Public)*":https://cloud.curoverse.com/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq project, click on the *Pipeline templates* tab. In the pipeline templates tab, you will see a template named *lobSTR v.3*. Click on the <span class="fa fa-lg fa-gears"></span> *Show* button to the left of this name. This will take to you to the "*lobSTR v.3*":https://cloud.curoverse.com/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu template page.
+Once in the "*lobSTR v.3 (Public)*":https://playground.arvados.org/projects/qr1hi-j7d0g-up6qgpqz5ie2vfq project, click on the *Pipeline templates* tab. In the pipeline templates tab, you will see a template named *lobSTR v.3*. Click on the <span class="fa fa-lg fa-gears"></span> *Show* button to the left of this name. This will take to you to the "*lobSTR v.3*":https://playground.arvados.org/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu template page.
Once in this page, you can take the *uuid* of this template from the address bar, which is *qr1hi-p5p6p-9pkaxt6qjnkxhhu*. Next, we will copy this template to your Arvados instance.
-h3. Copying a pipeline template from Curoverse cloud to your cluster
+h3. Copying a pipeline template from the Arvados Playground to your cluster
-As described above, navigate to the publicly shared pipeline template "*lobSTR v.3*":https://cloud.curoverse.com/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu using Curoverse Workbench. We will now copy this template with uuid *qr1hi-p5p6p-9pkaxt6qjnkxhhu* to your cluster.
+As described above, navigate to the publicly shared pipeline template "*lobSTR v.3*":https://playground.arvados.org/pipeline_templates/qr1hi-p5p6p-9pkaxt6qjnkxhhu on the Arvados Playground. We will now copy this template with uuid *qr1hi-p5p6p-9pkaxt6qjnkxhhu* to your cluster.
{% include 'tutorial_expectations' %}
We will use the Arvados *arv-copy* command to copy this template to your cluster. In order to use arv-copy, first you need to setup the source and destination cluster configuration files. Here, *qr1hi* would be the source cluster and your Arvados instance would be the *dst_cluster*.
-During this setup, if you have an account in Curoverse cloud, you can use "your access token":#using-your-token to create the source configuration file. If you do not have an account in Curoverse cloud, you can use the "anonymous access token":#using-anonymous-token for the source cluster configuration.
+During this setup, if you have an account in the Arvados Playground, you can use "your access token":#using-your-token to create the source configuration file. If you do not have an account in the Arvados Playground, you can use the "anonymous access token":#using-anonymous-token for the source cluster configuration.
h4(#using-anonymous-token). *Configuring source and destination setup files using anonymous access token*
@@ -53,7 +53,7 @@ You can now copy the pipeline template from *qr1hi* to *your cluster*. Replace *
h4(#using-your-token). *Configuring source and destination setup files using personal access token*
-If you already have an account in Curoverse cloud, you can follow the instructions in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html user guide to get your *Current token* for source and destination clusters, and use them to create the source *qr1hi.conf* and dst_cluster.conf configuration files.
+If you already have an account in the Arvados Playground, you can follow the instructions in the "*Using arv-copy*":http://doc.arvados.org/user/topics/arv-copy.html user guide to get your *Current token* for source and destination clusters, and use them to create the source *qr1hi.conf* and dst_cluster.conf configuration files.
You can now copy the pipeline template from *qr1hi* to *your cluster* with or without recursion. Replace *dst_cluster* with the *uuid_prefix* of your cluster.
diff --git a/doc/install/index.html.textile.liquid b/doc/install/index.html.textile.liquid
index 216810de4..c31b2ed43 100644
--- a/doc/install/index.html.textile.liquid
+++ b/doc/install/index.html.textile.liquid
@@ -20,8 +20,8 @@ table(table table-bordered table-condensed).
|"Arvados-in-a-box":arvbox.html (arvbox)|Easy|no|yes|no|yes|yes|
|"Arvados on Kubernetes":arvados-on-kubernetes.html|Easy ^1^|yes|yes ^2^|no ^2^|no|yes|
|"Manual installation":install-manual-prerequisites.html|Complicated|yes|yes|yes|no|no|
-|"Cloud demo":https://cloud.curoverse.com by Veritas Genetics|N/A ^3^|yes|yes|no|no|no|
-|"Cluster Operation Subscription":https://curoverse.com/products by Veritas Genetics|N/A ^3^|yes|yes|yes|yes|yes|
+|"Arvados Playground":https://playground.arvados.org hosted by Veritas Genetics|N/A ^3^|yes|yes|no|no|no|
+|"Cluster Operation Subscription":https://curoverse.com/products supported by Veritas Genetics|N/A ^3^|yes|yes|yes|yes|yes|
</div>
* ^1^ Assumes a Kubernetes cluster is available
diff --git a/doc/start/getting_started/firstpipeline.html.textile.liquid b/doc/start/getting_started/firstpipeline.html.textile.liquid
index 53adcd5c1..43369a3bb 100644
--- a/doc/start/getting_started/firstpipeline.html.textile.liquid
+++ b/doc/start/getting_started/firstpipeline.html.textile.liquid
@@ -11,7 +11,7 @@ SPDX-License-Identifier: CC-BY-SA-3.0
h2. LobSTR v3
-In this quickstart guide, we'll run an existing pipeline with pre-existing data. Step-by-step instructions are shown below. You can follow along using your own local install or by using Curoverse's <a href="http://lp.curoverse.com/beta-signup/">hosted version of Arvados</a> (in public beta, any Google account can be used to login).
+In this quickstart guide, we'll run an existing pipeline with pre-existing data. Step-by-step instructions are shown below. You can follow along using your own local install or by using the <a href="https://playground.arvados.org/">Arvados Playground</a> (any Google account can be used to log in).
(For more information about this pipeline, see our <a href="https://dev.arvados.org/projects/arvados/wiki/LobSTR_tutorial">detailed lobSTR guide</a>).
diff --git a/doc/user/cwl/cwl-runner.html.textile.liquid b/doc/user/cwl/cwl-runner.html.textile.liquid
index 2319b3cb8..ad5d3bd83 100644
--- a/doc/user/cwl/cwl-runner.html.textile.liquid
+++ b/doc/user/cwl/cwl-runner.html.textile.liquid
@@ -33,7 +33,7 @@ The tutorial files are located in the "documentation section of the Arvados sour
</code></pre>
</notextile>
-The tutorial data is hosted on "https://cloud.curoverse.com":https://cloud.curoverse.com (also referred to by the identifier *qr1hi*). If you are using a different Arvados instance, you may need to copy the data to your own instance. The easiest way to do this is with "arv-copy":{{site.baseurl}}/user/topics/arv-copy.html (this requires signing up for a free cloud.curoverse.com account).
+The tutorial data is hosted on "https://playground.arvados.org":https://playground.arvados.org (also referred to by the identifier *qr1hi*). If you are using a different Arvados instance, you may need to copy the data to your own instance. The easiest way to do this is with "arv-copy":{{site.baseurl}}/user/topics/arv-copy.html (this requires signing up for a free playground.arvados.org account).
<notextile>
<pre><code>~$ <span class="userinput">arv-copy --src qr1hi --dst settings 2463fa9efeb75e099685528b3b9071e0+438</span>
@@ -42,13 +42,13 @@ The tutorial data is hosted on "https://cloud.curoverse.com":https://cloud.curov
</code></pre>
</notextile>
-If you do not wish to create an account on "https://cloud.curoverse.com":https://cloud.curoverse.com, you may download the files anonymously and upload them to your local Arvados instance:
+If you do not wish to create an account on "https://playground.arvados.org":https://playground.arvados.org, you may download the files anonymously and upload them to your local Arvados instance:
-"https://cloud.curoverse.com/collections/2463fa9efeb75e099685528b3b9071e0+438":https://cloud.curoverse.com/collections/2463fa9efeb75e099685528b3b9071e0+438
+"https://playground.arvados.org/collections/2463fa9efeb75e099685528b3b9071e0+438":https://playground.arvados.org/collections/2463fa9efeb75e099685528b3b9071e0+438
-"https://cloud.curoverse.com/collections/ae480c5099b81e17267b7445e35b4bc7+180":https://cloud.curoverse.com/collections/ae480c5099b81e17267b7445e35b4bc7+180
+"https://playground.arvados.org/collections/ae480c5099b81e17267b7445e35b4bc7+180":https://playground.arvados.org/collections/ae480c5099b81e17267b7445e35b4bc7+180
-"https://cloud.curoverse.com/collections/655c6cd07550151b210961ed1d3852cf+57":https://cloud.curoverse.com/collections/655c6cd07550151b210961ed1d3852cf+57
+"https://playground.arvados.org/collections/655c6cd07550151b210961ed1d3852cf+57":https://playground.arvados.org/collections/655c6cd07550151b210961ed1d3852cf+57
h2. Submitting a workflow to an Arvados cluster
diff --git a/doc/user/topics/arv-copy.html.textile.liquid b/doc/user/topics/arv-copy.html.textile.liquid
index 74868bcab..f1adfe285 100644
--- a/doc/user/topics/arv-copy.html.textile.liquid
+++ b/doc/user/topics/arv-copy.html.textile.liquid
@@ -21,7 +21,7 @@ h2. arv-copy
@arv-copy@ allows users to copy collections and pipeline templates from one cluster to another. By default, @arv-copy@ will recursively go through a template and copy all dependencies associated with the object.
-For example, let's copy from the <a href="https://cloud.curoverse.com/">cloud instance *qr1hi*</a> to *dst_cluster*. The names *qr1hi* and *dst_cluster* are interchangable with any cluster name. You can find the cluster name from the prefix of the uuid of the object you want to copy. For example, in *qr1hi*-4zz18-tci4vn4fa95w0zx, the cluster name is qr1hi.
+For example, let's copy from the <a href="https://playground.arvados.org/">Arvados playground</a>, also known as *qr1hi*, to *dst_cluster*. The names *qr1hi* and *dst_cluster* are interchangable with any cluster name. You can find the cluster name from the prefix of the uuid of the object you want to copy. For example, in *qr1hi*-4zz18-tci4vn4fa95w0zx, the cluster name is qr1hi.
In order to communicate with both clusters, you must create custom configuration files for each cluster. In the Arvados Workbench, click on the dropdown menu icon <span class="fa fa-lg fa-user"></span> <span class="caret"></span> in the upper right corner of the top navigation menu to access the user settings menu, and click on the menu item *Current token*. Copy the @ARVADOS_API_HOST@ and @ARVADOS_API_TOKEN@ in both of your clusters. Then, create two configuration files, one for each cluster. The names of the files must have the format of *uuid_prefix.conf*. In our example, let's make two files, one for *qr1hi* and one for *dst_cluster*. From your *Current token* page in *qr1hi* and *dst_cluster*, copy the @ARVADOS_API_HOST@ and @ARVADOS_API_TOKEN at .
@@ -44,7 +44,7 @@ h3. How to copy a collection
First, select the uuid of the collection you want to copy from the source cluster. The uuid can be found in the collection display page in the collection summary area (top left box), or from the URL bar (the part after @collections/...@)
-Now copy the collection from *qr1hi* to *dst_cluster*. We will use the uuid @qr1hi-4zz18-tci4vn4fa95w0zx@ as an example. You can find this collection in the <a href="https://cloud.curoverse.com/collections/qr1hi-4zz18-tci4vn4fa95w0zx">lobSTR v.3 project on cloud.curoverse.com</a>.
+Now copy the collection from *qr1hi* to *dst_cluster*. We will use the uuid @qr1hi-4zz18-tci4vn4fa95w0zx@ as an example. You can find this collection in the <a href="https://playground.arvados.org/collections/qr1hi-4zz18-tci4vn4fa95w0zx">lobSTR v.3 project on playground.arvados.org</a>.
<notextile>
<pre><code>~$ <span class="userinput">arv-copy --src qr1hi --dst dst_cluster qr1hi-4zz18-tci4vn4fa95w0zx</span>
qr1hi-4zz18-tci4vn4fa95w0zx: 6.1M / 6.1M 100.0%
diff --git a/doc/user/tutorials/running-external-program.html.textile.liquid b/doc/user/tutorials/running-external-program.html.textile.liquid
index bcbf148e5..a4e58b84b 100644
--- a/doc/user/tutorials/running-external-program.html.textile.liquid
+++ b/doc/user/tutorials/running-external-program.html.textile.liquid
@@ -56,7 +56,7 @@ See the "run-command reference":{{site.baseurl}}/user/topics/run-command.html fo
<pre><code>~$ <span class="userinput">git rev-parse HEAD</span></code></pre>
</notextile>
-* @"docker_image"@ : The docker image hash used is found on the "Collection page":https://cloud.curoverse.com/collections/qr1hi-4zz18-dov6im679g3jr1n as the *Content address*.
+* @"docker_image"@ : The docker image hash used is found on the "Collection page":https://playground.arvados.org/collections/qr1hi-4zz18-dov6im679g3jr1n as the *Content address*.
h2. Running your pipeline
@@ -82,4 +82,4 @@ Note: Job reuse can only happen if all input collections do not change.
<pre><code>~$ <span class="userinput">git rev-parse HEAD</span></code></pre>
</notextile>
-* @"docker_image"@ : This specifies the "Docker":https://www.docker.com/ runtime environment where jobs run their scripts. Docker version control is similar to git, and you can commit and push changes to your images. You must re-use the docker image hash from the previous run to use the same image. It can be found on the "Collection page":https://cloud.curoverse.com/collections/qr1hi-4zz18-dov6im679g3jr1n as the *Content address* or the *docker_image_locator* in a job's metadata.
+* @"docker_image"@ : This specifies the "Docker":https://www.docker.com/ runtime environment where jobs run their scripts. Docker version control is similar to git, and you can commit and push changes to your images. You must re-use the docker image hash from the previous run to use the same image. It can be found on the "Collection page":https://playground.arvados.org/collections/qr1hi-4zz18-dov6im679g3jr1n as the *Content address* or the *docker_image_locator* in a job's metadata.
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