[ARVADOS] updated: 1.1.2-128-g8137793

Git user git at public.curoverse.com
Thu Jan 25 14:28:20 EST 2018


Summary of changes:
 sdk/cwl/tests/arvados-tests.sh                    | 3 +++
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa     | 0
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.amb | 0
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.ann | 0
 sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.fai | 0
 5 files changed, 3 insertions(+)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa (100%)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.amb (100%)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.ann (100%)
 copy sdk/cwl/tests/{secondary/dir => hg19}/hg19.fa.fai (100%)

       via  8137793fcd26eed30004f62a0c9ed0f839a9bd5e (commit)
      from  b50ea3465244e66ecf2a852f598f5b576e705017 (commit)

Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit 8137793fcd26eed30004f62a0c9ed0f839a9bd5e
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date:   Thu Jan 25 14:27:38 2018 -0500

    Fix missing files needed by arvados-tests.sh refs #12935
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>

diff --git a/sdk/cwl/tests/arvados-tests.sh b/sdk/cwl/tests/arvados-tests.sh
index 26b3161..d3c1e90 100755
--- a/sdk/cwl/tests/arvados-tests.sh
+++ b/sdk/cwl/tests/arvados-tests.sh
@@ -6,4 +6,7 @@
 if ! arv-get d7514270f356df848477718d58308cc4+94 > /dev/null ; then
     arv-put --portable-data-hash testdir/*
 fi
+if ! arv-get f225e6259bdd63bc7240599648dde9f1+97 > /dev/null ; then
+    arv-put --portable-data-hash hg19/*
+fi
 exec cwltest --test arvados-tests.yml --tool arvados-cwl-runner $@ -- --disable-reuse --compute-checksum
diff --git a/sdk/cwl/tests/hg19/hg19.fa b/sdk/cwl/tests/hg19/hg19.fa
new file mode 100644
index 0000000..e69de29
diff --git a/sdk/cwl/tests/hg19/hg19.fa.amb b/sdk/cwl/tests/hg19/hg19.fa.amb
new file mode 100644
index 0000000..e69de29
diff --git a/sdk/cwl/tests/hg19/hg19.fa.ann b/sdk/cwl/tests/hg19/hg19.fa.ann
new file mode 100644
index 0000000..e69de29
diff --git a/sdk/cwl/tests/hg19/hg19.fa.fai b/sdk/cwl/tests/hg19/hg19.fa.fai
new file mode 100644
index 0000000..e69de29

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