[ARVADOS] updated: 1.1.3-27-g3826a63
Git user
git at public.curoverse.com
Mon Feb 12 14:54:05 EST 2018
Summary of changes:
.gitignore | 2 +
.../app/assets/javascripts/application.js | 1 +
.../app/assets/javascripts/components/search.js | 23 +-
.../app/assets/javascripts/components/sessions.js | 37 +-
.../app/assets/javascripts/models/session_db.js | 336 ++++++++---
.../app/models/pipeline_instance_work_unit.rb | 18 +
apps/workbench/app/models/proxy_work_unit.rb | 4 +-
.../_show_components_running.html.erb | 2 +
apps/workbench/config/application.default.yml | 2 +-
apps/workbench/npm_packages | 1 +
.../test/integration/pipeline_instances_test.rb | 30 +-
apps/workbench/test/unit/work_unit_test.rb | 1 +
build/run-tests.sh | 39 +-
doc/Rakefile | 17 +-
doc/_config.yml | 2 +
.../R.html.textile.liquid} | 4 +-
doc/sdk/index.html.textile.liquid | 1 +
sdk/R/.Rbuildignore | 4 +
sdk/R/ArvadosR.Rproj | 20 +
sdk/R/DESCRIPTION | 20 +
sdk/R/NAMESPACE | 10 +
sdk/R/R/Arvados.R | 236 ++++++++
sdk/R/R/ArvadosFile.R | 270 +++++++++
sdk/R/R/Collection.R | 228 ++++++++
sdk/R/R/CollectionTree.R | 119 ++++
sdk/R/R/HttpParser.R | 53 ++
sdk/R/R/HttpRequest.R | 98 ++++
sdk/R/R/RESTService.R | 349 ++++++++++++
sdk/R/R/Subcollection.R | 329 +++++++++++
sdk/R/R/util.R | 54 ++
sdk/R/README.Rmd | 298 ++++++++++
sdk/R/man/Arvados.Rd | 62 ++
sdk/R/man/ArvadosFile.Rd | 56 ++
sdk/R/man/Collection.Rd | 51 ++
sdk/R/man/Subcollection.Rd | 47 ++
sdk/R/man/print.Arvados.Rd | 16 +
sdk/R/man/print.ArvadosFile.Rd | 16 +
sdk/R/man/print.Collection.Rd | 16 +
sdk/R/man/print.Subcollection.Rd | 16 +
sdk/R/run_test.R | 7 +
sdk/R/tests/testthat.R | 4 +
sdk/R/tests/testthat/fakes/FakeArvados.R | 35 ++
sdk/R/tests/testthat/fakes/FakeHttpParser.R | 56 ++
sdk/R/tests/testthat/fakes/FakeHttpRequest.R | 166 ++++++
sdk/R/tests/testthat/fakes/FakeRESTService.R | 167 ++++++
sdk/R/tests/testthat/test-Arvados.R | 306 ++++++++++
sdk/R/tests/testthat/test-ArvadosFile.R | 271 +++++++++
sdk/R/tests/testthat/test-Collection.R | 260 +++++++++
sdk/R/tests/testthat/test-CollectionTree.R | 102 ++++
sdk/R/tests/testthat/test-HttpParser.R | 92 +++
sdk/R/tests/testthat/test-HttpRequest.R | 28 +
sdk/R/tests/testthat/test-RESTService.R | 633 +++++++++++++++++++++
sdk/R/tests/testthat/test-Subcollection.R | 356 ++++++++++++
sdk/R/tests/testthat/test-util.R | 85 +++
services/api/test/fixtures/pipeline_instances.yml | 2 +
services/crunch-run/crunchrun.go | 56 +-
tools/arvbox/bin/arvbox | 5 +-
tools/arvbox/lib/arvbox/docker/Dockerfile.base | 2 +-
tools/arvbox/lib/arvbox/docker/common.sh | 1 +
.../lib/arvbox/docker/service/doc/run-service | 16 +
60 files changed, 5378 insertions(+), 160 deletions(-)
copy doc/sdk/{python/python.html.textile.liquid => R/R.html.textile.liquid} (86%)
create mode 100644 sdk/R/.Rbuildignore
create mode 100644 sdk/R/ArvadosR.Rproj
create mode 100644 sdk/R/DESCRIPTION
create mode 100644 sdk/R/NAMESPACE
create mode 100644 sdk/R/R/Arvados.R
create mode 100644 sdk/R/R/ArvadosFile.R
create mode 100644 sdk/R/R/Collection.R
create mode 100644 sdk/R/R/CollectionTree.R
create mode 100644 sdk/R/R/HttpParser.R
create mode 100644 sdk/R/R/HttpRequest.R
create mode 100644 sdk/R/R/RESTService.R
create mode 100644 sdk/R/R/Subcollection.R
create mode 100644 sdk/R/R/util.R
create mode 100644 sdk/R/README.Rmd
create mode 100644 sdk/R/man/Arvados.Rd
create mode 100644 sdk/R/man/ArvadosFile.Rd
create mode 100644 sdk/R/man/Collection.Rd
create mode 100644 sdk/R/man/Subcollection.Rd
create mode 100644 sdk/R/man/print.Arvados.Rd
create mode 100644 sdk/R/man/print.ArvadosFile.Rd
create mode 100644 sdk/R/man/print.Collection.Rd
create mode 100644 sdk/R/man/print.Subcollection.Rd
create mode 100644 sdk/R/run_test.R
create mode 100644 sdk/R/tests/testthat.R
create mode 100644 sdk/R/tests/testthat/fakes/FakeArvados.R
create mode 100644 sdk/R/tests/testthat/fakes/FakeHttpParser.R
create mode 100644 sdk/R/tests/testthat/fakes/FakeHttpRequest.R
create mode 100644 sdk/R/tests/testthat/fakes/FakeRESTService.R
create mode 100644 sdk/R/tests/testthat/test-Arvados.R
create mode 100644 sdk/R/tests/testthat/test-ArvadosFile.R
create mode 100644 sdk/R/tests/testthat/test-Collection.R
create mode 100644 sdk/R/tests/testthat/test-CollectionTree.R
create mode 100644 sdk/R/tests/testthat/test-HttpParser.R
create mode 100644 sdk/R/tests/testthat/test-HttpRequest.R
create mode 100644 sdk/R/tests/testthat/test-RESTService.R
create mode 100644 sdk/R/tests/testthat/test-Subcollection.R
create mode 100644 sdk/R/tests/testthat/test-util.R
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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.
commit 3826a6339ba1c901c054053920ed20547b3ba54d
Merge: c93eb87 c0a5fa0
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date: Mon Feb 12 14:53:50 2018 -0500
13025: Merge branch 'master' into 13025-keepstore-metrics
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>
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