[ARVADOS] updated: 1.1.3-27-g3826a63

Git user git at public.curoverse.com
Mon Feb 12 14:54:05 EST 2018


Summary of changes:
 .gitignore                                         |   2 +
 .../app/assets/javascripts/application.js          |   1 +
 .../app/assets/javascripts/components/search.js    |  23 +-
 .../app/assets/javascripts/components/sessions.js  |  37 +-
 .../app/assets/javascripts/models/session_db.js    | 336 ++++++++---
 .../app/models/pipeline_instance_work_unit.rb      |  18 +
 apps/workbench/app/models/proxy_work_unit.rb       |   4 +-
 .../_show_components_running.html.erb              |   2 +
 apps/workbench/config/application.default.yml      |   2 +-
 apps/workbench/npm_packages                        |   1 +
 .../test/integration/pipeline_instances_test.rb    |  30 +-
 apps/workbench/test/unit/work_unit_test.rb         |   1 +
 build/run-tests.sh                                 |  39 +-
 doc/Rakefile                                       |  17 +-
 doc/_config.yml                                    |   2 +
 .../R.html.textile.liquid}                         |   4 +-
 doc/sdk/index.html.textile.liquid                  |   1 +
 sdk/R/.Rbuildignore                                |   4 +
 sdk/R/ArvadosR.Rproj                               |  20 +
 sdk/R/DESCRIPTION                                  |  20 +
 sdk/R/NAMESPACE                                    |  10 +
 sdk/R/R/Arvados.R                                  | 236 ++++++++
 sdk/R/R/ArvadosFile.R                              | 270 +++++++++
 sdk/R/R/Collection.R                               | 228 ++++++++
 sdk/R/R/CollectionTree.R                           | 119 ++++
 sdk/R/R/HttpParser.R                               |  53 ++
 sdk/R/R/HttpRequest.R                              |  98 ++++
 sdk/R/R/RESTService.R                              | 349 ++++++++++++
 sdk/R/R/Subcollection.R                            | 329 +++++++++++
 sdk/R/R/util.R                                     |  54 ++
 sdk/R/README.Rmd                                   | 298 ++++++++++
 sdk/R/man/Arvados.Rd                               |  62 ++
 sdk/R/man/ArvadosFile.Rd                           |  56 ++
 sdk/R/man/Collection.Rd                            |  51 ++
 sdk/R/man/Subcollection.Rd                         |  47 ++
 sdk/R/man/print.Arvados.Rd                         |  16 +
 sdk/R/man/print.ArvadosFile.Rd                     |  16 +
 sdk/R/man/print.Collection.Rd                      |  16 +
 sdk/R/man/print.Subcollection.Rd                   |  16 +
 sdk/R/run_test.R                                   |   7 +
 sdk/R/tests/testthat.R                             |   4 +
 sdk/R/tests/testthat/fakes/FakeArvados.R           |  35 ++
 sdk/R/tests/testthat/fakes/FakeHttpParser.R        |  56 ++
 sdk/R/tests/testthat/fakes/FakeHttpRequest.R       | 166 ++++++
 sdk/R/tests/testthat/fakes/FakeRESTService.R       | 167 ++++++
 sdk/R/tests/testthat/test-Arvados.R                | 306 ++++++++++
 sdk/R/tests/testthat/test-ArvadosFile.R            | 271 +++++++++
 sdk/R/tests/testthat/test-Collection.R             | 260 +++++++++
 sdk/R/tests/testthat/test-CollectionTree.R         | 102 ++++
 sdk/R/tests/testthat/test-HttpParser.R             |  92 +++
 sdk/R/tests/testthat/test-HttpRequest.R            |  28 +
 sdk/R/tests/testthat/test-RESTService.R            | 633 +++++++++++++++++++++
 sdk/R/tests/testthat/test-Subcollection.R          | 356 ++++++++++++
 sdk/R/tests/testthat/test-util.R                   |  85 +++
 services/api/test/fixtures/pipeline_instances.yml  |   2 +
 services/crunch-run/crunchrun.go                   |  56 +-
 tools/arvbox/bin/arvbox                            |   5 +-
 tools/arvbox/lib/arvbox/docker/Dockerfile.base     |   2 +-
 tools/arvbox/lib/arvbox/docker/common.sh           |   1 +
 .../lib/arvbox/docker/service/doc/run-service      |  16 +
 60 files changed, 5378 insertions(+), 160 deletions(-)
 copy doc/sdk/{python/python.html.textile.liquid => R/R.html.textile.liquid} (86%)
 create mode 100644 sdk/R/.Rbuildignore
 create mode 100644 sdk/R/ArvadosR.Rproj
 create mode 100644 sdk/R/DESCRIPTION
 create mode 100644 sdk/R/NAMESPACE
 create mode 100644 sdk/R/R/Arvados.R
 create mode 100644 sdk/R/R/ArvadosFile.R
 create mode 100644 sdk/R/R/Collection.R
 create mode 100644 sdk/R/R/CollectionTree.R
 create mode 100644 sdk/R/R/HttpParser.R
 create mode 100644 sdk/R/R/HttpRequest.R
 create mode 100644 sdk/R/R/RESTService.R
 create mode 100644 sdk/R/R/Subcollection.R
 create mode 100644 sdk/R/R/util.R
 create mode 100644 sdk/R/README.Rmd
 create mode 100644 sdk/R/man/Arvados.Rd
 create mode 100644 sdk/R/man/ArvadosFile.Rd
 create mode 100644 sdk/R/man/Collection.Rd
 create mode 100644 sdk/R/man/Subcollection.Rd
 create mode 100644 sdk/R/man/print.Arvados.Rd
 create mode 100644 sdk/R/man/print.ArvadosFile.Rd
 create mode 100644 sdk/R/man/print.Collection.Rd
 create mode 100644 sdk/R/man/print.Subcollection.Rd
 create mode 100644 sdk/R/run_test.R
 create mode 100644 sdk/R/tests/testthat.R
 create mode 100644 sdk/R/tests/testthat/fakes/FakeArvados.R
 create mode 100644 sdk/R/tests/testthat/fakes/FakeHttpParser.R
 create mode 100644 sdk/R/tests/testthat/fakes/FakeHttpRequest.R
 create mode 100644 sdk/R/tests/testthat/fakes/FakeRESTService.R
 create mode 100644 sdk/R/tests/testthat/test-Arvados.R
 create mode 100644 sdk/R/tests/testthat/test-ArvadosFile.R
 create mode 100644 sdk/R/tests/testthat/test-Collection.R
 create mode 100644 sdk/R/tests/testthat/test-CollectionTree.R
 create mode 100644 sdk/R/tests/testthat/test-HttpParser.R
 create mode 100644 sdk/R/tests/testthat/test-HttpRequest.R
 create mode 100644 sdk/R/tests/testthat/test-RESTService.R
 create mode 100644 sdk/R/tests/testthat/test-Subcollection.R
 create mode 100644 sdk/R/tests/testthat/test-util.R

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Those revisions listed above that are new to this repository have
not appeared on any other notification email; so we list those
revisions in full, below.


commit 3826a6339ba1c901c054053920ed20547b3ba54d
Merge: c93eb87 c0a5fa0
Author: Tom Clegg <tclegg at veritasgenetics.com>
Date:   Mon Feb 12 14:53:50 2018 -0500

    13025: Merge branch 'master' into 13025-keepstore-metrics
    
    Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg at veritasgenetics.com>


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