[ARVADOS] updated: 1.1.3-9-g53e11d8

[Git user]

Summary of changes:
 .gitignore                                         |   1 +
 build/run-tests.sh                                 |   5 +
 doc/Rakefile                                       |  17 +-
 doc/_config.yml                                    |   2 +
 .../R.html.textile.liquid}                         |   4 +-
 doc/sdk/index.html.textile.liquid                  |   1 +
 sdk/R/.Rbuildignore                                |   2 +
 sdk/R/DESCRIPTION                                  |   2 +-
 sdk/R/NAMESPACE                                    |   8 +-
 sdk/R/R/Arvados.R                                  |  75 +++++-
 sdk/R/R/ArvadosFile.R                              |  68 ++++-
 sdk/R/R/Collection.R                               |  58 +++-
 sdk/R/R/CollectionTree.R                           |   5 -
 sdk/R/R/HttpParser.R                               |   2 -
 sdk/R/R/Subcollection.R                            |  61 ++++-
 sdk/R/README                                       | 251 -----------------
 sdk/R/README.Rmd                                   | 298 +++++++++++++++++++++
 sdk/R/man/Arvados.Rd                               |  63 ++++-
 sdk/R/man/ArvadosFile.Rd                           |  58 +++-
 sdk/R/man/Collection.Rd                            |  52 +++-
 sdk/R/man/CollectionTree.Rd                        |  17 --
 sdk/R/man/HttpParser.Rd                            |  14 -
 sdk/R/man/Subcollection.Rd                         |  49 +++-
 sdk/R/man/print.Arvados.Rd                         |  16 ++
 sdk/R/man/print.ArvadosFile.Rd                     |  16 ++
 sdk/R/man/print.Collection.Rd                      |  16 ++
 sdk/R/man/print.Subcollection.Rd                   |  16 ++
 tools/arvbox/bin/arvbox                            |   5 +-
 tools/arvbox/lib/arvbox/docker/Dockerfile.base     |   2 +-
 tools/arvbox/lib/arvbox/docker/common.sh           |   1 +
 .../lib/arvbox/docker/service/doc/run-service      |  16 ++
 31 files changed, 827 insertions(+), 374 deletions(-)
 copy doc/sdk/{python/python.html.textile.liquid => R/R.html.textile.liquid} (86%)
 delete mode 100644 sdk/R/README
 create mode 100644 sdk/R/README.Rmd
 delete mode 100644 sdk/R/man/CollectionTree.Rd
 delete mode 100644 sdk/R/man/HttpParser.Rd
 create mode 100644 sdk/R/man/print.Arvados.Rd
 create mode 100644 sdk/R/man/print.ArvadosFile.Rd
 create mode 100644 sdk/R/man/print.Collection.Rd
 create mode 100644 sdk/R/man/print.Subcollection.Rd

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       via  06e690a125bf736d39f8994534cd7e75bb8bffad (commit)
       via  24e302ceb24fcf9f00340e1896729de45cde45dd (commit)
       via  2173fac2d9acd783b9306696ce6857b2c511e0cf (commit)
       via  4fca56d2393f754a0f8ff21225fd975ca4b1f782 (commit)
       via  47cb4506cc97c701639038a12f08374e8f06c41b (commit)
       via  1e00053e7bc962a827ae960c1953ac9bd63d503b (commit)
       via  4c7c4c13f51f99de535905ad02fe9239490a7956 (commit)
      from  f7d7147e97751d5a4514443a3dd6a264786c883e (commit)

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commit 53e11d8a5dde938b5ade8a1d96b04e039d15a0e2
Merge: f7d7147 a4b4dde
Author: Peter Amstutz <pamstutz at veritasgenetics.com>
Date:   Fri Feb 9 14:20:32 2018 -0500

    Merge branch '11876-r-sdk' documentation, refs #11876
    
    Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz at veritasgenetics.com>


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